Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47039 * 2 1 4 4 C 1.34221 * 116.99767 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00386 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00033 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.46962 * 300.00573 * 6 4 3 8 8 C 1.53004 * 109.47038 * 60.00021 * 6 4 3 9 9 C 1.53000 * 109.46797 * 58.73466 * 8 6 4 10 10 N 1.46903 * 109.47306 * 179.97438 * 6 4 3 11 11 C 1.47838 * 110.99902 * 187.63015 * 10 6 4 12 12 C 1.54913 * 104.79752 * 213.63999 * 11 10 6 13 13 C 1.55140 * 101.65175 * 37.07009 * 12 11 10 14 14 O 1.42897 * 110.85641 * 82.79934 * 13 12 11 15 15 C 1.50697 * 110.70627 * 205.96587 * 13 12 11 16 16 H 1.08003 * 120.00124 * 116.30353 * 15 13 12 17 17 C 1.37878 * 120.00142 * 296.29820 * 15 13 12 18 18 N 1.31512 * 119.99824 * 7.49754 * 17 15 13 19 19 Si 1.86802 * 119.99987 * 187.49389 * 17 15 13 20 20 H 1.48496 * 109.47121 * 94.98635 * 19 17 15 21 21 H 1.48500 * 109.46613 * 214.98295 * 19 17 15 22 22 H 1.48491 * 109.47149 * 334.98446 * 19 17 15 23 23 C 1.47444 * 110.99478 * 66.78946 * 10 6 4 24 24 H 1.09002 * 109.47243 * 299.99619 * 1 2 3 25 25 H 1.08997 * 109.47492 * 59.99911 * 1 2 3 26 26 H 1.09000 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46969 * 239.99954 * 2 1 3 28 28 H 1.09000 * 109.47242 * 120.00559 * 2 1 3 29 29 H 1.09003 * 109.47187 * 298.74312 * 8 6 4 30 30 H 1.08994 * 109.47153 * 178.73796 * 8 6 4 31 31 H 1.09000 * 109.47683 * 294.48732 * 9 8 6 32 32 H 1.09001 * 109.47457 * 54.48996 * 9 8 6 33 33 H 1.09005 * 109.47222 * 174.48254 * 9 8 6 34 34 H 1.09006 * 110.37508 * 332.46919 * 11 10 6 35 35 H 1.08997 * 110.37635 * 94.80976 * 11 10 6 36 36 H 1.08997 * 110.98896 * 278.98448 * 12 11 10 37 37 H 1.09000 * 111.02587 * 155.17614 * 12 11 10 38 38 H 0.96699 * 113.99861 * 69.73786 * 14 13 12 39 39 H 0.96998 * 120.00129 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.88662 * 242.66280 * 23 10 6 41 41 H 1.09003 * 109.89305 * 3.68775 * 23 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5850 3.4698 -0.8887 8 6 3.4487 3.6840 1.2505 9 6 3.8927 2.9198 2.4994 10 7 5.3877 2.8605 0.0023 11 6 5.9882 4.1989 0.1862 12 6 7.2947 4.1640 -0.6455 13 6 6.8620 3.3205 -1.8735 14 8 6.1956 4.1346 -2.8406 15 6 8.0503 2.6287 -2.4902 16 1 8.1027 1.5499 -2.4987 17 6 9.0706 3.3728 -3.0436 18 7 9.0810 4.6804 -2.9043 19 14 10.4382 2.5234 -3.9911 20 1 10.1184 2.5374 -5.4412 21 1 11.7188 3.2389 -3.7598 22 1 10.5647 1.1191 -3.5256 23 6 5.8878 2.2912 -1.2625 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3614 3.7606 1.2389 30 1 3.8833 4.6835 1.2623 31 1 3.3816 1.9578 2.5377 32 1 4.9700 2.7577 2.4624 33 1 3.6430 3.4996 3.3881 34 1 5.3180 4.9708 -0.1922 35 1 6.2128 4.3727 1.2385 36 1 8.0950 3.6696 -0.0948 37 1 7.5933 5.1680 -0.9470 38 1 6.7754 4.7630 -3.2922 39 1 9.7990 5.2039 -3.2933 40 1 6.4118 1.3557 -1.0665 41 1 5.0559 2.1143 -1.9443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = -155.034613 kcal Electronic energy + Delta-G solvation = -22393.116857 eV Core-core repulsion = 19079.234321 eV Total energy + Delta-G solvation = -3313.882537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84163 -40.10736 -37.76589 -36.97950 -34.49649 -34.20353 -32.53259 -31.01122 -29.87702 -27.85965 -26.37201 -24.45787 -23.51270 -22.32564 -21.41076 -20.76696 -19.18880 -18.52312 -17.90036 -17.33447 -16.93842 -16.76580 -16.42686 -15.88000 -15.38684 -15.04407 -14.61634 -14.36095 -14.14314 -13.82721 -13.69393 -13.59171 -13.38736 -13.16760 -12.88829 -12.83891 -12.74563 -12.54886 -12.45442 -12.33747 -12.21561 -12.09020 -11.81550 -11.73456 -11.51877 -11.23591 -11.11764 -10.72178 -10.09003 -9.30356 -8.23590 -6.38265 1.18996 1.38263 1.41034 1.50800 1.55511 2.37432 2.96462 3.02929 3.64624 3.77608 3.83533 3.97960 4.02721 4.09722 4.22491 4.33130 4.35845 4.38011 4.47343 4.53658 4.64833 4.80491 4.82319 4.90975 4.92952 5.06629 5.11638 5.13944 5.18766 5.27625 5.43451 5.47767 5.49327 5.60396 5.79144 5.88243 6.04175 6.16069 6.64390 6.79252 7.31708 7.34172 8.80522 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.005076 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.051837 B = 5515.301840 C = 6076.945101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.471 3.529 5 O -0.522 6.522 6 C 0.084 3.916 7 H 0.075 0.925 8 C -0.106 4.106 9 C -0.144 4.144 10 N -0.511 5.511 11 C 0.055 3.945 12 C -0.117 4.117 13 C 0.220 3.780 14 O -0.595 6.595 15 C -0.565 4.565 16 H 0.046 0.954 17 C 0.036 3.964 18 N -0.905 5.905 19 Si 0.956 3.044 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.082 3.918 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.375 0.625 39 H 0.270 0.730 40 H 0.062 0.938 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 -1.635 8.242 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.410 6.410 6 C -0.026 4.026 7 H 0.092 0.908 8 C -0.143 4.143 9 C -0.201 4.201 10 N -0.237 5.237 11 C -0.071 4.071 12 C -0.156 4.156 13 C 0.180 3.820 14 O -0.403 6.403 15 C -0.603 4.603 16 H 0.065 0.935 17 C -0.166 4.166 18 N -0.544 5.544 19 Si 0.782 3.218 20 H -0.201 1.201 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.046 4.046 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.224 0.776 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.694 -2.480 8.829 17.321 hybrid contribution 1.414 -0.009 -1.727 2.232 sum -13.280 -2.489 7.102 15.264 Atomic orbital electron populations 1.21806 0.89766 1.04430 1.03877 1.23296 0.97442 0.79314 1.02182 1.86479 1.23399 1.33669 1.83974 1.23757 0.80783 0.92570 0.71545 1.90650 1.61087 1.43738 1.45494 1.21611 0.89456 0.89394 1.02167 0.90758 1.21646 1.02407 0.99277 0.90995 1.21695 1.01766 0.99255 0.97394 1.63491 1.03657 1.22664 1.33859 1.23079 0.95232 0.88117 1.00692 1.22903 0.95443 1.00621 0.96645 1.19937 0.88795 0.87294 0.85952 1.86081 1.41399 1.55175 1.57625 1.21805 1.05293 0.93283 1.39930 0.93537 1.25612 0.99409 0.95689 0.95855 1.69856 1.34559 1.05575 1.44391 0.85579 0.78647 0.78608 0.78981 1.20093 1.20168 1.20143 1.22511 0.96496 0.97389 0.88202 0.90720 0.91386 0.88114 0.92270 0.91359 0.88501 0.88993 0.94582 0.92803 0.90158 0.92910 0.88814 0.93459 0.91571 0.77563 0.92059 0.91957 0.95432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 10.29 71.98 0.74 -1.31 16 2 C 0.05 1.17 6.19 71.98 0.45 1.61 16 3 O -0.36 -10.16 10.14 -51.33 -0.52 -10.68 16 4 C 0.47 16.23 5.58 71.24 0.40 16.63 16 5 O -0.52 -21.53 15.12 21.95 0.33 -21.19 16 6 C 0.08 2.76 1.88 44.17 0.08 2.85 16 7 H 0.07 2.53 8.05 -2.39 -0.02 2.51 16 8 C -0.11 -2.56 5.28 30.60 0.16 -2.40 16 9 C -0.14 -3.49 9.47 71.98 0.68 -2.81 16 10 N -0.51 -20.14 3.96 -864.71 -3.42 -23.56 16 11 C 0.06 2.05 5.22 86.78 0.45 2.50 16 12 C -0.12 -5.46 5.45 31.98 0.17 -5.28 16 13 C 0.22 11.29 0.87 -10.36 -0.01 11.28 16 14 O -0.59 -31.04 13.12 -148.98 -1.95 -32.99 16 15 C -0.56 -31.68 8.20 25.60 0.21 -31.47 16 16 H 0.05 2.68 7.56 -2.91 -0.02 2.66 16 17 C 0.04 1.91 5.19 84.66 0.44 2.35 16 18 N -0.90 -48.22 10.71 21.45 0.23 -47.99 16 19 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.08 3.90 4.83 86.65 0.42 4.32 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.44 8.13 -2.38 -0.02 1.43 16 28 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.03 6.60 -2.39 -0.02 2.02 16 31 H 0.04 0.92 7.39 -2.39 -0.02 0.90 16 32 H 0.05 1.55 7.33 -2.39 -0.02 1.53 16 33 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.05 1.85 7.23 -2.38 -0.02 1.83 16 35 H 0.09 3.00 8.06 -2.39 -0.02 2.98 16 36 H 0.05 2.32 8.04 -2.39 -0.02 2.30 16 37 H 0.07 3.22 7.49 -2.39 -0.02 3.20 16 38 H 0.38 19.83 7.42 -74.06 -0.55 19.28 16 39 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 40 H 0.06 3.22 7.65 -2.39 -0.02 3.20 16 41 H 0.03 1.34 7.18 -2.39 -0.02 1.32 16 Total: -1.00 -63.14 327.62 1.35 -61.78 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.46 Total: 31.23 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.20 Total: -1.72 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -3.19 Total: -71.55 kcal Atomic # 8 Polarization: -62.72 SS G_CDS: -2.14 Total: -64.86 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -63.14 1.35 -61.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.252 kcal (2) G-P(sol) polarization free energy of solvation -63.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds