Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47126 * 2 1 4 4 C 1.34236 * 116.99838 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99942 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99370 * 179.97438 * 4 3 2 7 7 H 1.08991 * 109.47335 * 323.39042 * 6 4 3 8 8 C 1.53002 * 109.46722 * 83.39370 * 6 4 3 9 9 C 1.53006 * 109.46822 * 184.99628 * 8 6 4 10 10 N 1.46900 * 109.46693 * 203.38662 * 6 4 3 11 11 C 1.48537 * 111.00258 * 290.74777 * 10 6 4 12 12 C 1.54939 * 103.22694 * 159.71745 * 11 10 6 13 13 C 1.54594 * 102.92439 * 322.58838 * 12 11 10 14 14 O 1.42893 * 110.39377 * 262.99387 * 13 12 11 15 15 C 1.50705 * 110.30753 * 140.86841 * 13 12 11 16 16 H 1.08001 * 120.00221 * 244.84372 * 15 13 12 17 17 C 1.37876 * 119.99959 * 64.84998 * 15 13 12 18 18 N 1.31516 * 119.99951 * 352.47554 * 17 15 13 19 19 Si 1.86799 * 120.00274 * 172.48057 * 17 15 13 20 20 H 1.48501 * 109.47244 * 94.88038 * 19 17 15 21 21 H 1.48496 * 109.46976 * 214.88525 * 19 17 15 22 22 H 1.48501 * 109.46810 * 334.88246 * 19 17 15 23 23 C 1.47902 * 111.00023 * 48.14316 * 10 6 4 24 24 H 1.08999 * 109.46999 * 300.00261 * 1 2 3 25 25 H 1.09003 * 109.47238 * 60.00002 * 1 2 3 26 26 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47233 * 240.00192 * 2 1 3 28 28 H 1.08997 * 109.47650 * 119.99871 * 2 1 3 29 29 H 1.09001 * 109.46675 * 304.99061 * 8 6 4 30 30 H 1.08997 * 109.47540 * 64.99383 * 8 6 4 31 31 H 1.09005 * 109.47011 * 59.99530 * 9 8 6 32 32 H 1.09000 * 109.47336 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47023 * 299.99715 * 9 8 6 34 34 H 1.08996 * 110.66774 * 278.15859 * 11 10 6 35 35 H 1.09006 * 110.66277 * 41.28697 * 11 10 6 36 36 H 1.09001 * 110.72303 * 204.22665 * 12 11 10 37 37 H 1.09004 * 110.71872 * 80.94996 * 12 11 10 38 38 H 0.96698 * 114.00460 * 295.76857 * 14 13 12 39 39 H 0.97002 * 119.99990 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.91998 * 333.51265 * 23 10 6 41 41 H 1.09002 * 109.91369 * 94.80347 * 23 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.2971 3.5883 -0.6139 8 6 3.9627 3.4726 1.4316 9 6 4.4299 4.9295 1.4184 10 7 5.2823 2.9040 -0.5514 11 6 6.2137 2.2100 0.3745 12 6 7.3941 1.8084 -0.5453 13 6 6.6882 1.4236 -1.8657 14 8 6.5052 0.0083 -1.9385 15 6 7.4887 1.9081 -3.0471 16 1 7.0798 2.6615 -3.7041 17 6 8.7430 1.3894 -3.2894 18 7 9.3022 0.5843 -2.4126 19 14 9.6481 1.8301 -4.8629 20 1 10.5570 2.9762 -4.6068 21 1 10.4416 0.6617 -5.3213 22 1 8.6649 2.2029 -5.9116 23 6 5.3245 2.1371 -1.8154 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.9666 3.4144 1.8705 30 1 4.6558 2.8741 2.0229 31 1 3.7368 5.5280 0.8272 32 1 4.4594 5.3109 2.4391 33 1 5.4259 4.9877 0.9795 34 1 6.5507 2.8866 1.1598 35 1 5.7421 1.3258 0.8033 36 1 7.9318 0.9548 -0.1323 37 1 8.0673 2.6518 -0.6992 38 1 7.3309 -0.4938 -1.9726 39 1 10.1845 0.2191 -2.5833 40 1 4.5200 1.4019 -1.8307 41 1 5.2282 2.8144 -2.6640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = -128.745919 kcal Electronic energy + Delta-G solvation = -22686.162415 eV Core-core repulsion = 19373.419842 eV Total energy + Delta-G solvation = -3312.742573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72907 -38.32121 -36.21999 -35.32775 -32.90869 -31.99611 -31.64627 -29.48668 -27.90959 -26.47372 -24.37827 -23.21617 -22.07176 -21.12757 -19.50331 -19.32535 -17.54436 -16.97459 -16.46844 -16.14273 -15.41119 -14.75832 -14.55706 -14.05615 -13.93128 -13.59882 -13.46914 -13.05474 -12.81815 -12.38503 -12.24328 -12.06122 -11.72592 -11.64374 -11.45927 -11.32742 -11.17961 -10.93605 -10.80923 -10.57208 -10.52306 -10.44224 -10.30544 -10.18714 -10.09612 -9.86481 -8.98643 -8.55306 -7.95258 -7.79590 -6.11857 -4.17876 2.51459 2.89566 3.27374 3.34851 3.39768 4.36205 4.43089 4.83529 4.91672 4.97091 5.05144 5.15832 5.17721 5.28601 5.46646 5.60333 5.71533 5.73906 5.80235 5.81632 5.89187 6.01768 6.11764 6.21045 6.27393 6.40700 6.43865 6.49132 6.61058 6.77168 7.00681 7.15217 7.33128 7.56733 7.66829 7.70601 7.90639 8.09860 8.25431 8.83057 9.49659 9.61848 10.94611 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.005772 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.850205 B = 4849.817595 C = 5525.697406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.423 3.577 5 O -0.474 6.474 6 C 0.085 3.915 7 H 0.110 0.890 8 C -0.112 4.112 9 C -0.142 4.142 10 N -0.479 5.479 11 C 0.016 3.984 12 C -0.112 4.112 13 C 0.252 3.748 14 O -0.584 6.584 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.069 3.931 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.044 3.956 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.376 0.624 39 H 0.265 0.735 40 H 0.046 0.954 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.885 3.299 7.553 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.285 6.285 4 C 0.263 3.737 5 O -0.359 6.359 6 C -0.027 4.027 7 H 0.128 0.872 8 C -0.150 4.150 9 C -0.199 4.199 10 N -0.203 5.203 11 C -0.111 4.111 12 C -0.150 4.150 13 C 0.211 3.789 14 O -0.392 6.392 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.083 4.083 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.998 3.584 7.508 15.432 hybrid contribution 0.920 -1.017 -0.792 1.584 sum -12.078 2.567 6.716 14.056 Atomic orbital electron populations 1.21780 0.93036 1.02631 1.03219 1.22933 0.94958 0.81150 1.02527 1.86552 1.25758 1.31811 1.84348 1.25592 0.80474 0.94657 0.72964 1.90785 1.59249 1.42892 1.42942 1.22076 0.92562 0.88957 0.99093 0.87227 1.21554 1.02036 0.98228 0.93202 1.21658 1.02972 0.94194 1.01060 1.65353 1.01935 1.48434 1.04616 1.23597 0.94865 0.96815 0.95798 1.22914 0.95191 1.00800 0.96137 1.19182 0.88435 0.79152 0.92089 1.86176 1.36450 1.19522 1.97019 1.21735 1.00921 1.22938 1.11344 0.92119 1.25002 0.96890 0.94799 0.96592 1.69779 1.16344 1.33241 1.34178 0.86508 0.79531 0.77901 0.83613 1.20693 1.21127 1.19812 1.23047 0.99763 0.95031 0.90430 0.91747 0.91590 0.90574 0.91294 0.91639 0.91274 0.91022 0.92682 0.93035 0.90894 0.91972 0.91857 0.91740 0.91720 0.77428 0.92543 0.93576 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.37 -5.64 10.22 -39.27 -0.40 -6.04 16 4 C 0.42 7.48 5.71 36.01 0.21 7.68 16 5 O -0.47 -10.07 12.06 -18.75 -0.23 -10.29 16 6 C 0.08 1.36 2.56 -68.86 -0.18 1.19 16 7 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 8 C -0.11 -1.47 5.02 -26.73 -0.13 -1.60 16 9 C -0.14 -1.66 9.80 37.16 0.36 -1.29 16 10 N -0.48 -9.37 4.85 -223.88 -1.09 -10.45 16 11 C 0.02 0.33 4.70 -1.89 -0.01 0.32 16 12 C -0.11 -2.72 5.36 -24.87 -0.13 -2.85 16 13 C 0.25 6.54 1.00 -90.41 -0.09 6.45 16 14 O -0.58 -16.18 12.93 -35.23 -0.46 -16.63 16 15 C -0.53 -14.71 8.09 -34.44 -0.28 -14.99 16 16 H 0.06 1.67 7.36 -52.49 -0.39 1.29 16 17 C 0.07 1.87 5.23 -17.82 -0.09 1.78 16 18 N -0.90 -24.66 10.93 55.43 0.61 -24.05 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.04 1.02 5.53 -2.75 -0.02 1.00 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 28 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.00 6.46 -51.93 -0.34 0.66 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.99 7.71 -51.93 -0.40 0.59 16 34 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 35 H 0.06 1.37 5.53 -51.93 -0.29 1.08 16 36 H 0.06 1.65 7.99 -51.93 -0.41 1.24 16 37 H 0.06 1.65 7.86 -51.93 -0.41 1.24 16 38 H 0.38 10.53 7.29 45.56 0.33 10.87 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.05 1.10 5.06 -51.93 -0.26 0.83 16 41 H 0.08 1.75 7.39 -51.93 -0.38 1.37 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -30.19 323.06 -7.34 -37.53 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.88 Total: 11.22 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 0.25 Total: -2.33 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: -0.48 Total: -34.50 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.08 Total: -32.97 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.19 -7.34 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.214 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds