Wall clock time and date at job start Mon Mar 30 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47126 * 2 1 4 4 C 1.34236 * 116.99838 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99942 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99370 * 179.97438 * 4 3 2 7 7 H 1.08991 * 109.47335 * 323.39042 * 6 4 3 8 8 C 1.53002 * 109.46722 * 83.39370 * 6 4 3 9 9 C 1.53006 * 109.46822 * 184.99628 * 8 6 4 10 10 N 1.46900 * 109.46693 * 203.38662 * 6 4 3 11 11 C 1.48537 * 111.00258 * 290.74777 * 10 6 4 12 12 C 1.54939 * 103.22694 * 159.71745 * 11 10 6 13 13 C 1.54594 * 102.92439 * 322.58838 * 12 11 10 14 14 O 1.42893 * 110.39377 * 262.99387 * 13 12 11 15 15 C 1.50705 * 110.30753 * 140.86841 * 13 12 11 16 16 H 1.08001 * 120.00221 * 244.84372 * 15 13 12 17 17 C 1.37876 * 119.99959 * 64.84998 * 15 13 12 18 18 N 1.31516 * 119.99951 * 352.47554 * 17 15 13 19 19 Si 1.86799 * 120.00274 * 172.48057 * 17 15 13 20 20 H 1.48501 * 109.47244 * 94.88038 * 19 17 15 21 21 H 1.48496 * 109.46976 * 214.88525 * 19 17 15 22 22 H 1.48501 * 109.46810 * 334.88246 * 19 17 15 23 23 C 1.47902 * 111.00023 * 48.14316 * 10 6 4 24 24 H 1.08999 * 109.46999 * 300.00261 * 1 2 3 25 25 H 1.09003 * 109.47238 * 60.00002 * 1 2 3 26 26 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47233 * 240.00192 * 2 1 3 28 28 H 1.08997 * 109.47650 * 119.99871 * 2 1 3 29 29 H 1.09001 * 109.46675 * 304.99061 * 8 6 4 30 30 H 1.08997 * 109.47540 * 64.99383 * 8 6 4 31 31 H 1.09005 * 109.47011 * 59.99530 * 9 8 6 32 32 H 1.09000 * 109.47336 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47023 * 299.99715 * 9 8 6 34 34 H 1.08996 * 110.66774 * 278.15859 * 11 10 6 35 35 H 1.09006 * 110.66277 * 41.28697 * 11 10 6 36 36 H 1.09001 * 110.72303 * 204.22665 * 12 11 10 37 37 H 1.09004 * 110.71872 * 80.94996 * 12 11 10 38 38 H 0.96698 * 114.00460 * 295.76857 * 14 13 12 39 39 H 0.97002 * 119.99990 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.91998 * 333.51265 * 23 10 6 41 41 H 1.09002 * 109.91369 * 94.80347 * 23 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.2971 3.5883 -0.6139 8 6 3.9627 3.4726 1.4316 9 6 4.4299 4.9295 1.4184 10 7 5.2823 2.9040 -0.5514 11 6 6.2137 2.2100 0.3745 12 6 7.3941 1.8084 -0.5453 13 6 6.6882 1.4236 -1.8657 14 8 6.5052 0.0083 -1.9385 15 6 7.4887 1.9081 -3.0471 16 1 7.0798 2.6615 -3.7041 17 6 8.7430 1.3894 -3.2894 18 7 9.3022 0.5843 -2.4126 19 14 9.6481 1.8301 -4.8629 20 1 10.5570 2.9762 -4.6068 21 1 10.4416 0.6617 -5.3213 22 1 8.6649 2.2029 -5.9116 23 6 5.3245 2.1371 -1.8154 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.9666 3.4144 1.8705 30 1 4.6558 2.8741 2.0229 31 1 3.7368 5.5280 0.8272 32 1 4.4594 5.3109 2.4391 33 1 5.4259 4.9877 0.9795 34 1 6.5507 2.8866 1.1598 35 1 5.7421 1.3258 0.8033 36 1 7.9318 0.9548 -0.1323 37 1 8.0673 2.6518 -0.6992 38 1 7.3309 -0.4938 -1.9726 39 1 10.1845 0.2191 -2.5833 40 1 4.5200 1.4019 -1.8307 41 1 5.2282 2.8144 -2.6640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:29 Heat of formation + Delta-G solvation = -150.270425 kcal Electronic energy + Delta-G solvation = -22687.095788 eV Core-core repulsion = 19373.419842 eV Total energy + Delta-G solvation = -3313.675946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.16435 -39.90114 -37.79958 -36.89504 -34.44238 -34.13593 -32.60337 -31.06303 -29.78804 -27.93793 -26.27859 -24.26683 -23.34333 -22.59585 -21.27587 -20.92973 -19.15876 -18.79859 -17.84046 -17.49108 -16.93365 -16.77948 -16.05687 -15.83284 -15.31173 -15.20544 -14.64484 -14.48214 -14.13021 -13.74616 -13.59683 -13.53175 -13.20995 -13.10228 -12.88565 -12.79751 -12.70305 -12.51218 -12.34264 -12.30361 -12.13469 -11.93465 -11.89840 -11.69681 -11.55835 -11.51645 -10.97165 -10.65110 -10.03320 -9.42755 -8.19991 -6.34318 1.13755 1.39619 1.41847 1.52562 1.67773 2.39355 2.85689 3.06878 3.67604 3.75975 3.89768 3.96724 4.08199 4.08966 4.24419 4.31114 4.37970 4.48325 4.58169 4.60522 4.62998 4.75798 4.85468 4.90253 4.91519 5.07949 5.12891 5.14412 5.25315 5.27084 5.39239 5.48276 5.57121 5.62110 5.75833 5.86191 5.99003 6.17111 6.69876 6.74327 7.36252 7.43379 8.85248 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.005772 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.850205 B = 4849.817595 C = 5525.697406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.361 6.361 4 C 0.426 3.574 5 O -0.517 6.517 6 C 0.081 3.919 7 H 0.132 0.868 8 C -0.106 4.106 9 C -0.137 4.137 10 N -0.474 5.474 11 C 0.032 3.968 12 C -0.104 4.104 13 C 0.235 3.765 14 O -0.594 6.594 15 C -0.558 4.558 16 H 0.055 0.945 17 C 0.028 3.972 18 N -0.913 5.913 19 Si 0.960 3.040 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.272 1.272 23 C 0.054 3.946 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.370 0.630 39 H 0.268 0.732 40 H 0.035 0.965 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 4.660 8.075 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.268 3.732 5 O -0.405 6.405 6 C -0.030 4.030 7 H 0.150 0.850 8 C -0.144 4.144 9 C -0.194 4.194 10 N -0.198 5.198 11 C -0.095 4.095 12 C -0.143 4.143 13 C 0.196 3.804 14 O -0.402 6.402 15 C -0.596 4.596 16 H 0.073 0.927 17 C -0.173 4.173 18 N -0.553 5.553 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.074 4.074 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.218 0.782 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.463 4.963 8.042 17.277 hybrid contribution 1.294 -1.481 -0.932 2.177 sum -13.169 3.482 7.110 15.366 Atomic orbital electron populations 1.21791 0.89655 1.04322 1.03940 1.23219 0.97544 0.79867 1.01698 1.86540 1.24330 1.33183 1.83661 1.25806 0.80977 0.94704 0.71763 1.90779 1.60326 1.44274 1.45080 1.22333 0.90594 0.88614 1.01468 0.85036 1.21592 1.03396 0.98736 0.90693 1.21635 1.01957 0.93313 1.02543 1.65294 1.04191 1.47041 1.03241 1.23422 0.93339 0.97179 0.95574 1.22684 0.96029 0.99127 0.96459 1.19460 0.90261 0.78306 0.92414 1.86181 1.36116 1.20743 1.97135 1.21982 1.01801 1.23555 1.12277 0.92709 1.25719 0.97493 0.94660 0.99378 1.69872 1.16579 1.33484 1.35358 0.85519 0.78260 0.77833 0.79821 1.19929 1.20616 1.19714 1.22841 0.97629 0.94666 0.92264 0.90534 0.91290 0.88413 0.93040 0.91724 0.88758 0.92003 0.91393 0.90884 0.92972 0.89210 0.92896 0.93993 0.93388 0.78217 0.92309 0.94697 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 10.29 71.98 0.74 -1.53 16 2 C 0.05 1.28 6.19 71.98 0.45 1.73 16 3 O -0.36 -10.56 10.22 -51.47 -0.53 -11.08 16 4 C 0.43 14.71 5.71 71.24 0.41 15.12 16 5 O -0.52 -22.22 12.06 21.98 0.27 -21.96 16 6 C 0.08 2.46 2.56 44.17 0.11 2.57 16 7 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 8 C -0.11 -2.48 5.02 30.60 0.15 -2.33 16 9 C -0.14 -2.77 9.80 71.98 0.71 -2.07 16 10 N -0.47 -18.22 4.85 -862.22 -4.18 -22.40 16 11 C 0.03 1.30 4.70 86.65 0.41 1.71 16 12 C -0.10 -5.20 5.36 31.80 0.17 -5.03 16 13 C 0.24 12.56 1.00 -10.66 -0.01 12.54 16 14 O -0.59 -34.16 12.93 -148.98 -1.93 -36.09 16 15 C -0.56 -31.53 8.09 25.60 0.21 -31.32 16 16 H 0.05 3.07 7.36 -2.91 -0.02 3.05 16 17 C 0.03 1.52 5.23 84.65 0.44 1.96 16 18 N -0.91 -51.18 10.93 21.45 0.23 -50.95 16 19 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C 0.05 2.49 5.53 86.45 0.48 2.97 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 28 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.58 6.46 -2.39 -0.02 1.57 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.28 7.71 -2.39 -0.02 1.27 16 34 H 0.09 3.16 7.54 -2.39 -0.02 3.14 16 35 H 0.05 2.31 5.53 -2.38 -0.01 2.30 16 36 H 0.04 2.23 7.99 -2.39 -0.02 2.21 16 37 H 0.05 2.50 7.86 -2.39 -0.02 2.48 16 38 H 0.37 21.60 7.29 -74.06 -0.54 21.06 16 39 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.03 1.69 5.06 -2.39 -0.01 1.68 16 41 H 0.07 3.43 7.39 -2.39 -0.02 3.41 16 Total: -1.00 -66.25 323.06 0.64 -65.61 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.48 Total: 34.85 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 4.26 Total: -3.69 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -3.94 Total: -73.35 kcal Atomic # 8 Polarization: -66.94 SS G_CDS: -2.19 Total: -69.13 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.25 0.64 -65.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.656 kcal (2) G-P(sol) polarization free energy of solvation -66.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds