Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.47125 * 2 1 4 4 C 1.42898 * 113.99907 * 184.63450 * 3 2 1 5 5 H 1.08998 * 109.47435 * 328.16337 * 4 3 2 6 6 C 1.53006 * 109.46841 * 88.16204 * 4 3 2 7 7 C 1.52998 * 109.47131 * 55.95554 * 6 4 3 8 8 C 1.50701 * 109.47326 * 208.16107 * 4 3 2 9 9 O 1.21285 * 119.99842 * 347.99653 * 8 4 3 10 10 N 1.34775 * 120.00197 * 167.99817 * 8 4 3 11 11 C 1.47016 * 125.64772 * 5.28105 * 10 8 4 12 12 C 1.54372 * 107.29127 * 181.12906 * 11 10 8 13 13 C 1.55159 * 102.91651 * 22.13960 * 12 11 10 14 14 O 1.42901 * 111.00491 * 82.63699 * 13 12 11 15 15 C 1.50696 * 111.00378 * 206.45396 * 13 12 11 16 16 H 1.08004 * 120.00056 * 120.53100 * 15 13 12 17 17 C 1.37877 * 119.99876 * 300.24606 * 15 13 12 18 18 N 1.31510 * 120.00032 * 354.30292 * 17 15 13 19 19 Si 1.86808 * 119.99725 * 174.29699 * 17 15 13 20 20 H 1.48494 * 109.46885 * 94.97077 * 19 17 15 21 21 H 1.48500 * 109.47119 * 214.96869 * 19 17 15 22 22 H 1.48500 * 109.47293 * 334.96794 * 19 17 15 23 23 C 1.47421 * 125.64940 * 185.32535 * 10 8 4 24 24 H 1.09002 * 109.47578 * 299.99866 * 1 2 3 25 25 H 1.09002 * 109.47176 * 60.00090 * 1 2 3 26 26 H 1.09002 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47578 * 240.00134 * 2 1 3 28 28 H 1.09002 * 109.47176 * 119.99909 * 2 1 3 29 29 H 1.09000 * 109.46835 * 175.95584 * 6 4 3 30 30 H 1.08999 * 109.46768 * 295.95337 * 6 4 3 31 31 H 1.08997 * 109.47373 * 185.41929 * 7 6 4 32 32 H 1.08995 * 109.46927 * 305.42593 * 7 6 4 33 33 H 1.09001 * 109.47182 * 65.42283 * 7 6 4 34 34 H 1.08998 * 109.88409 * 300.51375 * 11 10 8 35 35 H 1.08998 * 109.88400 * 61.68208 * 11 10 8 36 36 H 1.08990 * 110.70755 * 263.79716 * 12 11 10 37 37 H 1.08995 * 110.75838 * 140.50079 * 12 11 10 38 38 H 0.96700 * 113.99363 * 57.50265 * 14 13 12 39 39 H 0.97007 * 119.99790 * 179.97438 * 18 17 15 40 40 H 1.09002 * 110.36454 * 36.99504 * 23 10 8 41 41 H 1.08998 * 110.36766 * 274.67595 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4268 1.4616 -0.1055 5 1 3.8971 0.6061 0.3793 6 6 3.8275 1.4951 -1.5818 7 6 3.0886 2.6354 -2.2850 8 6 3.8800 2.7318 0.5670 9 8 3.0656 3.5700 0.8915 10 7 5.1902 2.9365 0.8077 11 6 6.2883 2.0613 0.3722 12 6 7.6023 2.6777 0.8980 13 6 7.1225 3.5613 2.0797 14 8 6.9521 2.7823 3.2655 15 6 8.0739 4.7049 2.3201 16 1 7.7219 5.7237 2.2520 17 6 9.3924 4.4506 2.6328 18 7 9.7945 3.2143 2.8316 19 14 10.6078 5.8622 2.7741 20 1 10.7198 6.2786 4.1951 21 1 11.9376 5.4216 2.2812 22 1 10.1324 7.0083 1.9583 23 6 5.7595 4.0745 1.5520 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.9027 1.6542 -1.6628 30 1 3.5641 0.5473 -2.0513 31 1 3.2990 2.6001 -3.3539 32 1 2.0162 2.5286 -2.1219 33 1 3.4243 3.5901 -1.8801 34 1 6.1547 1.0633 0.7895 35 1 6.3121 2.0101 -0.7163 36 1 8.0770 3.2869 0.1289 37 1 8.2806 1.9000 1.2487 38 1 7.7493 2.3114 3.5446 39 1 10.7222 3.0354 3.0512 40 1 5.1093 4.3475 2.3833 41 1 5.9061 4.9267 0.8884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = -137.211342 kcal Electronic energy + Delta-G solvation = -22163.815421 eV Core-core repulsion = 18850.705760 eV Total energy + Delta-G solvation = -3313.109662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.92074 -38.12409 -36.85280 -34.38933 -33.49267 -32.25300 -30.94323 -29.85432 -28.49372 -26.89211 -24.85371 -23.33662 -22.60921 -21.29466 -19.85436 -18.94835 -17.13980 -16.79799 -16.63106 -15.95643 -15.26079 -14.96801 -14.80996 -14.51325 -14.16950 -13.86538 -13.24079 -13.12386 -12.99158 -12.51821 -12.27016 -12.17908 -11.95668 -11.85376 -11.68991 -11.38789 -11.33994 -11.23254 -11.00509 -10.98468 -10.84690 -10.53296 -10.46233 -10.04808 -9.73583 -9.45656 -9.09296 -8.67156 -8.24903 -7.99809 -6.31278 -4.37665 3.02388 3.13633 3.18720 3.26770 3.31221 4.03336 4.25985 4.69983 4.83749 4.93867 4.97251 5.01823 5.15895 5.24208 5.27603 5.46558 5.49917 5.58150 5.67014 5.73686 5.80048 5.83754 5.91650 6.00588 6.01954 6.15427 6.23963 6.40158 6.41574 6.63274 6.84441 6.89077 7.16893 7.23431 7.29846 7.71099 8.01273 8.11131 8.63450 8.67335 9.28158 9.39459 10.76908 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037166 B = 0.004370 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.202631 B = 6405.783110 C = 6501.818846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.078 3.922 5 H 0.080 0.920 6 C -0.144 4.144 7 C -0.146 4.146 8 C 0.529 3.471 9 O -0.533 6.533 10 N -0.607 5.607 11 C 0.095 3.905 12 C -0.137 4.137 13 C 0.248 3.752 14 O -0.582 6.582 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.074 3.926 18 N -0.894 5.894 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.123 3.877 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.380 0.620 39 H 0.267 0.733 40 H 0.070 0.930 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 -8.301 -8.544 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.273 6.273 4 C 0.017 3.983 5 H 0.098 0.902 6 C -0.182 4.182 7 C -0.204 4.204 8 C 0.316 3.684 9 O -0.410 6.410 10 N -0.341 5.341 11 C -0.028 4.028 12 C -0.176 4.176 13 C 0.207 3.793 14 O -0.391 6.391 15 C -0.573 4.573 16 H 0.083 0.917 17 C -0.129 4.129 18 N -0.533 5.533 19 Si 0.729 3.271 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.001 3.999 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.534 -7.574 -8.378 14.780 hybrid contribution 1.635 0.063 0.074 1.638 sum -7.899 -7.511 -8.304 13.703 Atomic orbital electron populations 1.21712 0.93625 1.01958 1.03321 1.22557 0.95764 0.84072 0.99975 1.88040 1.19056 1.25745 1.94465 1.21875 0.83333 0.96948 0.96192 0.90174 1.22042 1.01755 1.00404 0.94001 1.21643 1.01431 0.98102 0.99178 1.19762 0.81266 0.87872 0.79532 1.90672 1.52143 1.45679 1.52511 1.48532 1.04588 1.26452 1.54540 1.22313 0.88697 0.93935 0.97870 1.23196 0.93515 1.00741 1.00131 1.19647 0.88760 0.88721 0.82140 1.86161 1.40780 1.66838 1.45314 1.21435 0.93841 0.93029 1.48994 0.91689 1.24969 0.98270 0.96075 0.93547 1.69704 1.17639 1.18763 1.47237 0.86421 0.80041 0.82141 0.78509 1.20507 1.20999 1.19614 1.22386 0.95297 0.87619 0.94573 0.91678 0.91883 0.91238 0.93398 0.93340 0.90049 0.91113 0.92904 0.91654 0.92558 0.92501 0.92487 0.91201 0.89564 0.77038 0.92263 0.91184 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.15 0.38 -1.05 16 2 C 0.05 0.60 6.44 37.15 0.24 0.84 16 3 O -0.35 -5.54 8.62 -54.85 -0.47 -6.01 16 4 C 0.08 1.19 2.22 -27.88 -0.06 1.13 16 5 H 0.08 1.10 7.58 -51.93 -0.39 0.70 16 6 C -0.14 -1.81 5.73 -26.73 -0.15 -1.96 16 7 C -0.15 -1.94 9.52 37.16 0.35 -1.58 16 8 C 0.53 10.43 6.21 -10.99 -0.07 10.36 16 9 O -0.53 -12.49 16.84 -14.06 -0.24 -12.73 16 10 N -0.61 -12.04 3.33 -170.50 -0.57 -12.61 16 11 C 0.09 1.65 6.04 -3.04 -0.02 1.63 16 12 C -0.14 -2.84 5.38 -24.87 -0.13 -2.97 16 13 C 0.25 5.88 0.86 -89.62 -0.08 5.81 16 14 O -0.58 -14.63 13.16 -35.23 -0.46 -15.10 16 15 C -0.53 -13.79 8.27 -34.44 -0.28 -14.07 16 16 H 0.06 1.68 7.80 -52.48 -0.41 1.27 16 17 C 0.07 1.88 5.26 -17.82 -0.09 1.78 16 18 N -0.89 -22.60 10.86 55.43 0.60 -22.00 16 19 Si 0.90 19.95 29.54 -169.99 -5.02 14.92 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C 0.12 2.75 6.07 -2.53 -0.02 2.74 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.45 7.71 -51.93 -0.40 0.05 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.99 5.45 -51.93 -0.28 0.71 16 30 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.90 7.41 -51.93 -0.38 0.52 16 33 H 0.06 0.87 7.53 -51.93 -0.39 0.48 16 34 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 35 H 0.06 0.84 6.01 -51.93 -0.31 0.53 16 36 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 37 H 0.09 1.85 7.60 -51.93 -0.39 1.46 16 38 H 0.38 9.43 7.56 45.56 0.34 9.78 16 39 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.07 1.68 8.09 -51.93 -0.42 1.26 16 41 H 0.07 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -29.38 329.47 -7.07 -36.45 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.94 Total: 9.45 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 0.07 Total: 2.65 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.03 Total: -34.60 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -1.17 Total: -33.84 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.38 -7.07 -36.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.761 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds