Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47198 * 2 1 4 4 C 1.42900 * 114.00411 * 182.13546 * 3 2 1 5 5 H 1.08998 * 109.46952 * 14.03290 * 4 3 2 6 6 C 1.53004 * 109.47545 * 254.03798 * 4 3 2 7 7 C 1.53008 * 109.46955 * 65.55569 * 6 4 3 8 8 C 1.50692 * 109.47458 * 134.03570 * 4 3 2 9 9 O 1.21280 * 119.99869 * 10.52215 * 8 4 3 10 10 N 1.34780 * 120.00544 * 190.52413 * 8 4 3 11 11 C 1.47021 * 125.64483 * 5.49093 * 10 8 4 12 12 C 1.54322 * 107.27279 * 181.02274 * 11 10 8 13 13 C 1.55154 * 102.94011 * 22.19295 * 12 11 10 14 14 O 1.42899 * 111.00895 * 82.57416 * 13 12 11 15 15 C 1.50705 * 111.00246 * 206.39086 * 13 12 11 16 16 H 1.07996 * 120.00115 * 24.92106 * 15 13 12 17 17 C 1.37877 * 119.99492 * 204.92883 * 15 13 12 18 18 N 1.31518 * 119.99899 * 173.79789 * 17 15 13 19 19 Si 1.86801 * 120.00519 * 353.79520 * 17 15 13 20 20 H 1.48495 * 109.47000 * 87.13912 * 19 17 15 21 21 H 1.48496 * 109.47333 * 207.13892 * 19 17 15 22 22 H 1.48505 * 109.46771 * 327.14085 * 19 17 15 23 23 C 1.47420 * 125.65084 * 185.17961 * 10 8 4 24 24 H 1.08997 * 109.46953 * 299.99471 * 1 2 3 25 25 H 1.08994 * 109.47308 * 59.99743 * 1 2 3 26 26 H 1.09006 * 109.46765 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47365 * 240.00200 * 2 1 3 28 28 H 1.09002 * 109.47609 * 120.00383 * 2 1 3 29 29 H 1.08994 * 109.47499 * 185.55791 * 6 4 3 30 30 H 1.09004 * 109.46847 * 305.56428 * 6 4 3 31 31 H 1.08997 * 109.46422 * 175.67648 * 7 6 4 32 32 H 1.08995 * 109.47650 * 295.68264 * 7 6 4 33 33 H 1.09001 * 109.46608 * 55.68314 * 7 6 4 34 34 H 1.09002 * 109.88011 * 300.44105 * 11 10 8 35 35 H 1.09004 * 109.88145 * 61.60102 * 11 10 8 36 36 H 1.09001 * 110.72075 * 140.55489 * 12 11 10 37 37 H 1.09002 * 110.71852 * 263.65038 * 12 11 10 38 38 H 0.96701 * 113.99525 * 65.61511 * 14 13 12 39 39 H 0.97001 * 120.00687 * 179.97438 * 18 17 15 40 40 H 1.08992 * 110.36850 * 274.74436 * 23 10 8 41 41 H 1.09002 * 110.36452 * 37.07311 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4300 1.4604 -0.0486 5 1 3.8617 0.4985 -0.3251 6 6 3.9557 1.8790 1.3259 7 6 3.6848 0.7631 2.3370 8 6 3.8169 2.4973 -1.0714 9 8 2.9689 3.2148 -1.5582 10 7 5.1052 2.6273 -1.4453 11 6 6.2116 1.7551 -1.0249 12 6 7.4988 2.3007 -1.6783 13 6 7.1382 3.7805 -1.9738 14 8 7.3190 4.5936 -0.8126 15 6 7.9427 4.3116 -3.1322 16 1 8.3349 3.6317 -3.8740 17 6 8.1782 5.6654 -3.2447 18 7 8.9800 6.1175 -4.1841 19 14 7.3585 6.8576 -2.0631 20 1 8.1968 7.0033 -0.8461 21 1 7.2063 8.1803 -2.7206 22 1 6.0207 6.3366 -1.6831 23 6 5.6373 3.6638 -2.3485 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.0286 2.0612 1.2646 30 1 3.4501 2.7901 1.6462 31 1 4.1267 1.0280 3.2975 32 1 2.6091 0.6333 2.4554 33 1 4.1257 -0.1670 1.9784 34 1 6.3088 1.7768 0.0605 35 1 6.0282 0.7350 -1.3624 36 1 8.3386 2.2392 -0.9860 37 1 7.7209 1.7634 -2.6003 38 1 8.2387 4.6664 -0.5229 39 1 9.1455 7.0700 -4.2636 40 1 5.5264 3.3547 -3.3878 41 1 5.1292 4.6129 -2.1778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = -132.668954 kcal Electronic energy + Delta-G solvation = -22259.375778 eV Core-core repulsion = 18946.463089 eV Total energy + Delta-G solvation = -3312.912689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.01160 -38.36856 -37.09921 -34.86247 -33.65639 -32.39994 -31.11278 -30.37521 -28.67643 -27.21077 -24.77912 -22.97848 -22.81903 -21.74915 -19.95091 -19.12155 -17.59892 -17.17219 -16.72580 -15.90433 -15.37721 -15.30366 -15.03493 -14.41287 -14.16479 -14.04291 -13.87071 -13.13496 -12.86997 -12.59953 -12.57470 -12.43404 -12.27729 -12.06738 -11.94438 -11.68878 -11.64886 -11.41345 -11.25234 -10.97825 -10.74557 -10.64275 -10.32030 -10.22606 -9.93170 -9.33158 -9.09765 -8.62471 -8.53878 -8.11689 -6.25019 -4.37910 2.93274 3.06777 3.41700 3.53746 3.71738 3.89726 4.45248 4.63089 4.76458 4.80113 4.93290 4.98874 5.05990 5.08070 5.10862 5.20211 5.21850 5.37677 5.46493 5.50949 5.57452 5.65697 5.76079 5.84244 5.92348 5.98882 6.02169 6.09129 6.18108 6.49402 6.54642 6.62579 6.71373 6.95391 7.09170 7.39705 7.98057 8.06086 8.55874 8.60336 8.76432 9.35891 10.83700 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030798 B = 0.004997 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.943565 B = 5601.725510 C = 5744.072678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.081 3.919 5 H 0.081 0.919 6 C -0.137 4.137 7 C -0.149 4.149 8 C 0.517 3.483 9 O -0.530 6.530 10 N -0.611 5.611 11 C 0.099 3.901 12 C -0.147 4.147 13 C 0.219 3.781 14 O -0.559 6.559 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.884 5.884 19 Si 0.944 3.056 20 H -0.292 1.292 21 H -0.323 1.323 22 H -0.268 1.268 23 C 0.116 3.884 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 -13.912 11.388 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.274 6.274 4 C 0.020 3.980 5 H 0.099 0.901 6 C -0.175 4.175 7 C -0.206 4.206 8 C 0.303 3.697 9 O -0.406 6.406 10 N -0.346 5.346 11 C -0.024 4.024 12 C -0.185 4.185 13 C 0.179 3.821 14 O -0.367 6.367 15 C -0.592 4.592 16 H 0.101 0.899 17 C -0.131 4.131 18 N -0.519 5.519 19 Si 0.779 3.221 20 H -0.219 1.219 21 H -0.255 1.255 22 H -0.194 1.194 23 C -0.006 4.006 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.220 0.780 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.249 -13.196 10.998 19.509 hybrid contribution 0.528 0.293 0.494 0.780 sum -8.720 -12.903 11.492 19.354 Atomic orbital electron populations 1.21721 0.93619 1.01992 1.03401 1.22664 0.95886 0.83975 0.99963 1.88039 1.18824 1.25909 1.94595 1.21948 0.83194 0.98079 0.94826 0.90071 1.21933 1.02115 1.00309 0.93173 1.21789 1.02003 0.97946 0.98911 1.20212 0.81388 0.85297 0.82761 1.90687 1.48680 1.45636 1.55634 1.48666 1.06196 1.31832 1.47954 1.22143 0.87871 0.93171 0.99201 1.23246 0.94917 0.99575 1.00806 1.20247 0.91320 0.86001 0.84541 1.86180 1.32247 1.70552 1.47692 1.21172 1.34463 0.93818 1.09731 0.89902 1.25163 0.93506 0.98821 0.95628 1.69948 1.34028 1.14981 1.32937 0.85777 0.81150 0.76829 0.78379 1.21924 1.25457 1.19390 1.22953 0.94434 0.90589 0.92591 0.91830 0.91639 0.91211 0.93483 0.93118 0.89827 0.90417 0.92138 0.92236 0.92830 0.91789 0.92498 0.90653 0.90185 0.77951 0.92259 0.90236 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.02 16 2 C 0.05 0.56 6.09 37.16 0.23 0.79 16 3 O -0.36 -5.39 9.25 -54.92 -0.51 -5.90 16 4 C 0.08 1.17 2.05 -27.89 -0.06 1.12 16 5 H 0.08 0.97 7.42 -51.93 -0.39 0.58 16 6 C -0.14 -1.73 5.56 -26.73 -0.15 -1.87 16 7 C -0.15 -1.40 9.02 37.16 0.34 -1.06 16 8 C 0.52 9.96 7.16 -10.99 -0.08 9.88 16 9 O -0.53 -12.55 16.83 -14.13 -0.24 -12.78 16 10 N -0.61 -11.50 3.32 -170.39 -0.57 -12.07 16 11 C 0.10 1.48 6.16 -3.07 -0.02 1.46 16 12 C -0.15 -2.49 6.14 -24.90 -0.15 -2.64 16 13 C 0.22 4.72 0.70 -89.50 -0.06 4.66 16 14 O -0.56 -11.87 8.78 -35.23 -0.31 -12.18 16 15 C -0.55 -14.32 8.86 -34.44 -0.31 -14.63 16 16 H 0.08 2.30 8.00 -52.49 -0.42 1.88 16 17 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 18 N -0.88 -25.85 13.96 55.43 0.77 -25.08 16 19 Si 0.94 23.49 24.69 -169.99 -4.20 19.30 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.32 -8.32 7.11 56.52 0.40 -7.92 16 22 H -0.27 -6.90 5.44 56.52 0.31 -6.59 16 23 C 0.12 2.55 5.88 -2.41 -0.01 2.54 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.05 0.45 6.55 -51.93 -0.34 0.11 16 29 H 0.08 1.03 5.75 -51.93 -0.30 0.74 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.56 6.91 -51.93 -0.36 0.20 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.84 5.99 -51.93 -0.31 0.53 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 38 H 0.37 6.89 8.61 45.56 0.39 7.28 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.08 1.77 8.03 -51.93 -0.42 1.35 16 41 H 0.08 1.89 6.58 -51.93 -0.34 1.55 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -33.10 323.24 -6.09 -39.19 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.93 Total: 3.50 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 0.01 Total: 1.16 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.21 Total: -37.15 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.06 Total: -30.86 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.20 Total: 19.30 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.10 -6.09 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.477 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds