Wall clock time and date at job start Mon Mar 30 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47198 * 2 1 4 4 C 1.42900 * 114.00411 * 182.13546 * 3 2 1 5 5 H 1.08998 * 109.46952 * 14.03290 * 4 3 2 6 6 C 1.53004 * 109.47545 * 254.03798 * 4 3 2 7 7 C 1.53008 * 109.46955 * 65.55569 * 6 4 3 8 8 C 1.50692 * 109.47458 * 134.03570 * 4 3 2 9 9 O 1.21280 * 119.99869 * 10.52215 * 8 4 3 10 10 N 1.34780 * 120.00544 * 190.52413 * 8 4 3 11 11 C 1.47021 * 125.64483 * 5.49093 * 10 8 4 12 12 C 1.54322 * 107.27279 * 181.02274 * 11 10 8 13 13 C 1.55154 * 102.94011 * 22.19295 * 12 11 10 14 14 O 1.42899 * 111.00895 * 82.57416 * 13 12 11 15 15 C 1.50705 * 111.00246 * 206.39086 * 13 12 11 16 16 H 1.07996 * 120.00115 * 24.92106 * 15 13 12 17 17 C 1.37877 * 119.99492 * 204.92883 * 15 13 12 18 18 N 1.31518 * 119.99899 * 173.79789 * 17 15 13 19 19 Si 1.86801 * 120.00519 * 353.79520 * 17 15 13 20 20 H 1.48495 * 109.47000 * 87.13912 * 19 17 15 21 21 H 1.48496 * 109.47333 * 207.13892 * 19 17 15 22 22 H 1.48505 * 109.46771 * 327.14085 * 19 17 15 23 23 C 1.47420 * 125.65084 * 185.17961 * 10 8 4 24 24 H 1.08997 * 109.46953 * 299.99471 * 1 2 3 25 25 H 1.08994 * 109.47308 * 59.99743 * 1 2 3 26 26 H 1.09006 * 109.46765 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47365 * 240.00200 * 2 1 3 28 28 H 1.09002 * 109.47609 * 120.00383 * 2 1 3 29 29 H 1.08994 * 109.47499 * 185.55791 * 6 4 3 30 30 H 1.09004 * 109.46847 * 305.56428 * 6 4 3 31 31 H 1.08997 * 109.46422 * 175.67648 * 7 6 4 32 32 H 1.08995 * 109.47650 * 295.68264 * 7 6 4 33 33 H 1.09001 * 109.46608 * 55.68314 * 7 6 4 34 34 H 1.09002 * 109.88011 * 300.44105 * 11 10 8 35 35 H 1.09004 * 109.88145 * 61.60102 * 11 10 8 36 36 H 1.09001 * 110.72075 * 140.55489 * 12 11 10 37 37 H 1.09002 * 110.71852 * 263.65038 * 12 11 10 38 38 H 0.96701 * 113.99525 * 65.61511 * 14 13 12 39 39 H 0.97001 * 120.00687 * 179.97438 * 18 17 15 40 40 H 1.08992 * 110.36850 * 274.74436 * 23 10 8 41 41 H 1.09002 * 110.36452 * 37.07311 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4300 1.4604 -0.0486 5 1 3.8617 0.4985 -0.3251 6 6 3.9557 1.8790 1.3259 7 6 3.6848 0.7631 2.3370 8 6 3.8169 2.4973 -1.0714 9 8 2.9689 3.2148 -1.5582 10 7 5.1052 2.6273 -1.4453 11 6 6.2116 1.7551 -1.0249 12 6 7.4988 2.3007 -1.6783 13 6 7.1382 3.7805 -1.9738 14 8 7.3190 4.5936 -0.8126 15 6 7.9427 4.3116 -3.1322 16 1 8.3349 3.6317 -3.8740 17 6 8.1782 5.6654 -3.2447 18 7 8.9800 6.1175 -4.1841 19 14 7.3585 6.8576 -2.0631 20 1 8.1968 7.0033 -0.8461 21 1 7.2063 8.1803 -2.7206 22 1 6.0207 6.3366 -1.6831 23 6 5.6373 3.6638 -2.3485 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.0286 2.0612 1.2646 30 1 3.4501 2.7901 1.6462 31 1 4.1267 1.0280 3.2975 32 1 2.6091 0.6333 2.4554 33 1 4.1257 -0.1670 1.9784 34 1 6.3088 1.7768 0.0605 35 1 6.0282 0.7350 -1.3624 36 1 8.3386 2.2392 -0.9860 37 1 7.7209 1.7634 -2.6003 38 1 8.2387 4.6664 -0.5229 39 1 9.1455 7.0700 -4.2636 40 1 5.5264 3.3547 -3.3878 41 1 5.1292 4.6129 -2.1778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:18 Heat of formation + Delta-G solvation = -157.757004 kcal Electronic energy + Delta-G solvation = -22260.463677 eV Core-core repulsion = 18946.463089 eV Total energy + Delta-G solvation = -3314.000588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42189 -39.71203 -38.52800 -36.47210 -34.62808 -34.47673 -31.92878 -31.90597 -30.20153 -28.52486 -26.49552 -24.28536 -23.69044 -22.76451 -21.63652 -20.53654 -19.50522 -18.44553 -17.94222 -17.24915 -16.92300 -16.63310 -16.53266 -16.16622 -15.48216 -15.10470 -15.04538 -14.69107 -14.32103 -14.13017 -14.00784 -13.57174 -13.31096 -13.25635 -13.21049 -13.13633 -12.81515 -12.61433 -12.38715 -12.33789 -12.16240 -12.11950 -11.98596 -11.65140 -11.30679 -11.09109 -10.72573 -10.41187 -10.26168 -9.63749 -8.40259 -6.52160 1.38848 1.47033 1.51133 1.68947 1.77387 2.36929 2.82148 2.92886 3.34233 3.52761 3.79532 3.81032 3.84607 4.16444 4.17996 4.24910 4.29988 4.37164 4.46932 4.48929 4.52200 4.62532 4.79291 4.81508 4.87425 4.93419 5.01876 5.10479 5.13764 5.15528 5.25447 5.27097 5.31577 5.38355 5.50714 6.02077 6.13201 6.54149 6.58924 6.96347 7.09627 7.26920 8.72573 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030798 B = 0.004997 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.943565 B = 5601.725510 C = 5744.072678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.388 6.388 4 C 0.091 3.909 5 H 0.117 0.883 6 C -0.134 4.134 7 C -0.142 4.142 8 C 0.505 3.495 9 O -0.589 6.589 10 N -0.611 5.611 11 C 0.098 3.902 12 C -0.137 4.137 13 C 0.216 3.784 14 O -0.563 6.563 15 C -0.545 4.545 16 H 0.057 0.943 17 C 0.032 3.968 18 N -0.929 5.929 19 Si 0.997 3.003 20 H -0.268 1.268 21 H -0.338 1.338 22 H -0.286 1.286 23 C 0.116 3.884 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.386 0.614 39 H 0.268 0.732 40 H 0.067 0.933 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 -16.938 14.130 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.306 6.306 4 C 0.030 3.970 5 H 0.135 0.865 6 C -0.172 4.172 7 C -0.199 4.199 8 C 0.295 3.705 9 O -0.470 6.470 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.175 4.175 13 C 0.175 3.825 14 O -0.373 6.373 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.169 4.169 18 N -0.567 5.567 19 Si 0.832 3.168 20 H -0.194 1.194 21 H -0.271 1.271 22 H -0.213 1.213 23 C -0.007 4.007 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.014 -16.269 13.782 23.149 hybrid contribution 0.422 1.178 -0.419 1.320 sum -8.592 -15.090 13.363 21.912 Atomic orbital electron populations 1.21768 0.93054 1.03550 1.02337 1.22973 0.96489 0.82285 1.01572 1.88024 1.19175 1.28803 1.94635 1.21978 0.83514 0.97581 0.93931 0.86533 1.21931 1.01863 1.00616 0.92752 1.21759 1.02272 0.97510 0.98395 1.21340 0.80673 0.85649 0.82876 1.90651 1.50331 1.48163 1.57809 1.48721 1.07279 1.31366 1.47120 1.22434 0.85076 0.93897 1.00875 1.23147 0.97137 0.95352 1.01871 1.20111 0.90097 0.88995 0.83301 1.86125 1.33543 1.70717 1.46867 1.21468 1.33414 0.93092 1.10339 0.92506 1.25755 0.94030 1.00390 0.96761 1.70044 1.36341 1.15225 1.35075 0.84911 0.79707 0.74548 0.77663 1.19390 1.27123 1.21293 1.22596 0.94862 0.90235 0.92976 0.92050 0.93580 0.88308 0.92810 0.90334 0.89290 0.92996 0.90950 0.92406 0.90496 0.88824 0.88691 0.87826 0.90281 0.76383 0.92307 0.91505 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.04 0.79 6.09 71.98 0.44 1.23 16 3 O -0.39 -11.11 9.25 -130.16 -1.20 -12.32 16 4 C 0.09 2.39 2.05 29.85 0.06 2.45 16 5 H 0.12 2.20 7.42 -2.39 -0.02 2.18 16 6 C -0.13 -2.94 5.56 30.60 0.17 -2.77 16 7 C -0.14 -2.03 9.02 71.98 0.65 -1.38 16 8 C 0.51 19.12 7.16 87.65 0.63 19.75 16 9 O -0.59 -28.78 16.83 15.80 0.27 -28.51 16 10 N -0.61 -22.10 3.32 -811.37 -2.70 -24.80 16 11 C 0.10 2.52 6.16 86.73 0.53 3.05 16 12 C -0.14 -4.19 6.14 31.78 0.20 -3.99 16 13 C 0.22 9.07 0.70 -10.07 -0.01 9.06 16 14 O -0.56 -22.88 8.78 -148.98 -1.31 -24.19 16 15 C -0.55 -28.42 8.86 25.60 0.23 -28.19 16 16 H 0.06 3.22 8.00 -2.91 -0.02 3.19 16 17 C 0.03 1.75 5.46 84.65 0.46 2.22 16 18 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 19 Si 1.00 49.37 24.69 68.60 1.69 51.06 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.34 -17.49 7.11 99.48 0.71 -16.78 16 22 H -0.29 -14.92 5.44 99.48 0.54 -14.38 16 23 C 0.12 5.20 5.88 86.94 0.51 5.72 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.05 0.92 8.10 -2.39 -0.02 0.91 16 28 H 0.08 1.03 6.55 -2.39 -0.02 1.01 16 29 H 0.09 1.83 5.75 -2.39 -0.01 1.82 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.86 6.91 -2.39 -0.02 0.84 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 1.92 5.99 -2.39 -0.01 1.91 16 35 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 2.45 7.99 -2.39 -0.02 2.43 16 38 H 0.39 13.23 8.61 -74.06 -0.64 12.59 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.07 3.08 8.03 -2.39 -0.02 3.06 16 41 H 0.04 1.96 6.58 -2.39 -0.02 1.94 16 Total: -1.00 -76.38 323.24 1.88 -74.50 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.22 Total: 14.24 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 4.61 Total: 5.37 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.40 Total: -80.16 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -2.25 Total: -65.02 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.69 Total: 51.06 kcal Total: -76.38 1.88 -74.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.255 kcal (2) G-P(sol) polarization free energy of solvation -76.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds