Wall clock time and date at job start Mon Mar 30 2020 01:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47222 * 2 1 4 4 C 1.52999 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47230 * 54.99853 * 4 3 2 6 6 O 1.42901 * 109.46873 * 294.99857 * 4 3 2 7 7 C 1.53001 * 109.47115 * 175.00301 * 4 3 2 8 8 C 1.50698 * 109.47087 * 184.99698 * 7 4 3 9 9 O 1.21281 * 120.00055 * 359.97438 * 8 7 4 10 10 N 1.34772 * 120.00290 * 179.97438 * 8 7 4 11 11 C 1.47429 * 125.64607 * 0.03027 * 10 8 7 12 12 C 1.54912 * 104.93044 * 155.78958 * 11 10 8 13 13 C 1.55447 * 101.44740 * 37.00246 * 12 11 10 14 14 O 1.42908 * 110.70640 * 82.89071 * 13 12 11 15 15 C 1.50701 * 110.86207 * 206.07272 * 13 12 11 16 16 H 1.07998 * 119.99632 * 20.77951 * 15 13 12 17 17 C 1.37874 * 120.00162 * 200.78381 * 15 13 12 18 18 N 1.31516 * 119.99862 * 173.62889 * 17 15 13 19 19 Si 1.86800 * 120.00149 * 353.62123 * 17 15 13 20 20 H 1.48500 * 109.46967 * 86.34026 * 19 17 15 21 21 H 1.48499 * 109.47231 * 206.34056 * 19 17 15 22 22 H 1.48499 * 109.46944 * 326.34046 * 19 17 15 23 23 C 1.47020 * 125.65132 * 179.97438 * 10 8 7 24 24 H 1.09001 * 109.47181 * 299.99895 * 1 2 3 25 25 H 1.09003 * 109.47075 * 60.00079 * 1 2 3 26 26 H 1.09007 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46492 * 240.00393 * 2 1 3 28 28 H 1.08995 * 109.47091 * 120.00212 * 2 1 3 29 29 H 1.09001 * 109.46956 * 59.99968 * 3 2 1 30 30 H 1.09005 * 109.46931 * 300.00481 * 3 2 1 31 31 H 0.96706 * 114.00265 * 300.00554 * 6 4 3 32 32 H 1.08997 * 109.47155 * 64.99443 * 7 4 3 33 33 H 1.09007 * 109.46925 * 304.99758 * 7 4 3 34 34 H 1.08999 * 110.36754 * 274.68463 * 11 10 8 35 35 H 1.09003 * 110.36657 * 36.89573 * 11 10 8 36 36 H 1.08992 * 111.00201 * 155.13582 * 12 11 10 37 37 H 1.08994 * 111.00493 * 278.99288 * 12 11 10 38 38 H 0.96693 * 113.99745 * 61.10756 * 14 13 12 39 39 H 0.96999 * 120.00001 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.88654 * 300.50295 * 23 10 8 41 41 H 1.09005 * 109.88097 * 61.66768 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8532 -0.8426 6 8 4.0468 0.8729 1.2202 7 6 4.0800 2.8795 -0.1263 8 6 5.5818 2.8705 -0.2504 9 8 6.1850 1.8184 -0.2389 10 7 6.2548 4.0316 -0.3741 11 6 5.6505 5.3761 -0.4019 12 6 6.7780 6.3301 0.0656 13 6 8.0269 5.6759 -0.5891 14 8 8.1578 6.0881 -1.9511 15 6 9.2751 6.0060 0.1881 16 1 9.2022 6.3201 1.2188 17 6 10.5102 5.9070 -0.4167 18 7 11.5878 6.3135 0.2183 19 14 10.6530 5.1955 -2.1380 20 1 10.4394 6.2723 -3.1380 21 1 12.0057 4.6108 -2.3213 22 1 9.6273 4.1376 -2.3229 23 6 7.7130 4.1674 -0.5024 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.7617 1.3472 2.0132 32 1 3.7919 3.4460 0.7592 33 1 3.6450 3.3433 -1.0117 34 1 5.3347 5.6292 -1.4139 35 1 4.8036 5.4256 0.2826 36 1 6.6185 7.3391 -0.3145 37 1 6.8623 6.3324 1.1522 38 1 8.2741 7.0413 -2.0641 39 1 12.4567 6.2435 -0.2071 40 1 8.2038 3.7360 0.3700 41 1 8.0538 3.6654 -1.4080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:58 Heat of formation + Delta-G solvation = -149.505447 kcal Electronic energy + Delta-G solvation = -21616.890230 eV Core-core repulsion = 18303.247456 eV Total energy + Delta-G solvation = -3313.642774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80699 -38.25539 -37.06405 -34.72605 -34.25151 -32.39381 -31.47748 -30.07235 -28.62876 -27.37506 -24.93016 -22.96337 -22.11969 -21.35591 -19.83746 -18.89876 -17.43787 -16.82462 -16.54847 -16.13157 -15.53969 -15.17019 -14.92597 -14.53894 -14.28223 -14.04169 -13.69485 -13.51866 -13.15725 -12.57094 -12.50507 -12.18390 -11.99964 -11.95947 -11.85870 -11.72752 -11.45227 -11.41200 -10.95547 -10.88205 -10.80558 -10.62327 -10.30748 -10.20841 -10.01437 -9.40927 -9.23039 -8.67688 -8.54930 -8.05603 -6.22389 -4.34967 3.04649 3.37759 3.44617 3.54879 3.67603 4.31101 4.46671 4.52417 4.64879 4.79792 4.89810 5.01708 5.05979 5.12200 5.17354 5.21281 5.29671 5.38810 5.48775 5.55313 5.57657 5.65211 5.69489 5.82001 5.86171 5.99779 6.09944 6.10956 6.13147 6.51399 6.58482 6.66557 6.78913 7.01761 7.44971 7.69128 8.03426 8.10576 8.61288 8.62948 8.79921 9.39106 10.86525 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038304 B = 0.003984 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.820438 B = 7026.986878 C = 7193.923855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.151 4.151 4 C 0.123 3.877 5 H 0.103 0.897 6 O -0.544 6.544 7 C -0.170 4.170 8 C 0.520 3.480 9 O -0.534 6.534 10 N -0.616 5.616 11 C 0.101 3.899 12 C -0.147 4.147 13 C 0.218 3.782 14 O -0.565 6.565 15 C -0.554 4.554 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.886 5.886 19 Si 0.938 3.062 20 H -0.288 1.288 21 H -0.321 1.321 22 H -0.267 1.267 23 C 0.114 3.886 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.366 0.634 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.373 0.627 39 H 0.267 0.733 40 H 0.081 0.919 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.597 -3.892 -0.939 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.189 4.189 4 C 0.063 3.937 5 H 0.121 0.879 6 O -0.348 6.348 7 C -0.211 4.211 8 C 0.307 3.693 9 O -0.411 6.411 10 N -0.351 5.351 11 C -0.022 4.022 12 C -0.186 4.186 13 C 0.178 3.822 14 O -0.373 6.373 15 C -0.591 4.591 16 H 0.099 0.901 17 C -0.129 4.129 18 N -0.520 5.520 19 Si 0.772 3.228 20 H -0.215 1.215 21 H -0.251 1.251 22 H -0.193 1.193 23 C -0.007 4.007 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.212 0.788 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.221 0.779 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.914 -5.572 -1.425 20.728 hybrid contribution -0.054 0.943 -0.390 1.022 sum -19.968 -4.629 -1.815 20.578 Atomic orbital electron populations 1.21791 0.96082 1.01532 1.01573 1.21456 0.95285 0.96378 1.02824 1.22360 0.95992 0.97882 1.02689 1.21690 0.91300 0.91798 0.88894 0.87880 1.86734 1.76939 1.56195 1.14889 1.22454 0.93968 1.00160 1.04496 1.20064 0.89222 0.82709 0.77268 1.90724 1.70058 1.30169 1.50158 1.48755 1.09112 1.05591 1.71596 1.22311 0.96648 0.82859 1.00387 1.23409 0.95507 0.97856 1.01803 1.20133 0.93397 0.89258 0.79413 1.86154 1.94019 1.28265 1.28849 1.21190 0.88884 1.48833 1.00188 0.90078 1.25129 0.95364 0.93214 0.99225 1.69956 0.98917 1.44337 1.38827 0.85919 0.74370 0.79818 0.82685 1.21538 1.25125 1.19263 1.22667 0.77906 0.98151 1.02018 0.92891 0.92911 0.92823 0.91978 0.91226 0.91612 0.91070 0.78840 0.88998 0.88531 0.91806 0.91879 0.90553 0.90344 0.77941 0.92316 0.90109 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -1.04 5.83 -26.73 -0.16 -1.19 16 3 C -0.15 -1.25 4.89 -26.73 -0.13 -1.39 16 4 C 0.12 1.43 2.51 -26.73 -0.07 1.36 16 5 H 0.10 1.41 7.95 -51.93 -0.41 1.00 16 6 O -0.54 -7.26 12.11 -49.66 -0.60 -7.86 16 7 C -0.17 -2.02 4.39 -27.88 -0.12 -2.14 16 8 C 0.52 9.32 7.73 -10.99 -0.08 9.23 16 9 O -0.53 -11.88 15.75 -8.87 -0.14 -12.02 16 10 N -0.62 -11.46 3.33 -170.52 -0.57 -12.03 16 11 C 0.10 1.51 6.68 -2.53 -0.02 1.49 16 12 C -0.15 -2.54 6.27 -24.42 -0.15 -2.69 16 13 C 0.22 4.76 0.68 -89.78 -0.06 4.70 16 14 O -0.57 -11.94 8.89 -35.23 -0.31 -12.25 16 15 C -0.55 -14.58 8.71 -34.44 -0.30 -14.88 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.08 2.12 5.46 -17.82 -0.10 2.02 16 18 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 19 Si 0.94 23.50 24.90 -169.99 -4.23 19.27 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.32 -8.25 7.11 56.52 0.40 -7.85 16 22 H -0.27 -6.77 5.18 56.52 0.29 -6.48 16 23 C 0.11 2.57 5.64 -3.07 -0.02 2.55 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.65 7.82 -51.93 -0.41 0.24 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.37 3.43 9.05 45.56 0.41 3.84 16 32 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 33 H 0.10 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.74 7.47 -51.93 -0.39 0.35 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.39 8.00 -51.93 -0.42 0.97 16 38 H 0.37 6.73 9.07 45.56 0.41 7.14 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 1.97 7.81 -51.93 -0.41 1.56 16 41 H 0.07 1.61 6.30 -51.93 -0.33 1.29 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -33.83 327.92 -6.38 -40.21 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.41 Total: 6.82 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.84 Total: -1.63 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.21 Total: -37.49 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.05 Total: -32.12 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.23 Total: 19.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.83 -6.38 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.295 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds