Wall clock time and date at job start Mon Mar 30 2020 01:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47222 * 2 1 4 4 C 1.52999 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47230 * 54.99853 * 4 3 2 6 6 O 1.42901 * 109.46873 * 294.99857 * 4 3 2 7 7 C 1.53001 * 109.47115 * 175.00301 * 4 3 2 8 8 C 1.50698 * 109.47087 * 184.99698 * 7 4 3 9 9 O 1.21281 * 120.00055 * 359.97438 * 8 7 4 10 10 N 1.34772 * 120.00290 * 179.97438 * 8 7 4 11 11 C 1.47429 * 125.64607 * 0.03027 * 10 8 7 12 12 C 1.54912 * 104.93044 * 155.78958 * 11 10 8 13 13 C 1.55447 * 101.44740 * 37.00246 * 12 11 10 14 14 O 1.42908 * 110.70640 * 82.89071 * 13 12 11 15 15 C 1.50701 * 110.86207 * 206.07272 * 13 12 11 16 16 H 1.07998 * 119.99632 * 20.77951 * 15 13 12 17 17 C 1.37874 * 120.00162 * 200.78381 * 15 13 12 18 18 N 1.31516 * 119.99862 * 173.62889 * 17 15 13 19 19 Si 1.86800 * 120.00149 * 353.62123 * 17 15 13 20 20 H 1.48500 * 109.46967 * 86.34026 * 19 17 15 21 21 H 1.48499 * 109.47231 * 206.34056 * 19 17 15 22 22 H 1.48499 * 109.46944 * 326.34046 * 19 17 15 23 23 C 1.47020 * 125.65132 * 179.97438 * 10 8 7 24 24 H 1.09001 * 109.47181 * 299.99895 * 1 2 3 25 25 H 1.09003 * 109.47075 * 60.00079 * 1 2 3 26 26 H 1.09007 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46492 * 240.00393 * 2 1 3 28 28 H 1.08995 * 109.47091 * 120.00212 * 2 1 3 29 29 H 1.09001 * 109.46956 * 59.99968 * 3 2 1 30 30 H 1.09005 * 109.46931 * 300.00481 * 3 2 1 31 31 H 0.96706 * 114.00265 * 300.00554 * 6 4 3 32 32 H 1.08997 * 109.47155 * 64.99443 * 7 4 3 33 33 H 1.09007 * 109.46925 * 304.99758 * 7 4 3 34 34 H 1.08999 * 110.36754 * 274.68463 * 11 10 8 35 35 H 1.09003 * 110.36657 * 36.89573 * 11 10 8 36 36 H 1.08992 * 111.00201 * 155.13582 * 12 11 10 37 37 H 1.08994 * 111.00493 * 278.99288 * 12 11 10 38 38 H 0.96693 * 113.99745 * 61.10756 * 14 13 12 39 39 H 0.96999 * 120.00001 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.88654 * 300.50295 * 23 10 8 41 41 H 1.09005 * 109.88097 * 61.66768 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8532 -0.8426 6 8 4.0468 0.8729 1.2202 7 6 4.0800 2.8795 -0.1263 8 6 5.5818 2.8705 -0.2504 9 8 6.1850 1.8184 -0.2389 10 7 6.2548 4.0316 -0.3741 11 6 5.6505 5.3761 -0.4019 12 6 6.7780 6.3301 0.0656 13 6 8.0269 5.6759 -0.5891 14 8 8.1578 6.0881 -1.9511 15 6 9.2751 6.0060 0.1881 16 1 9.2022 6.3201 1.2188 17 6 10.5102 5.9070 -0.4167 18 7 11.5878 6.3135 0.2183 19 14 10.6530 5.1955 -2.1380 20 1 10.4394 6.2723 -3.1380 21 1 12.0057 4.6108 -2.3213 22 1 9.6273 4.1376 -2.3229 23 6 7.7130 4.1674 -0.5024 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.7617 1.3472 2.0132 32 1 3.7919 3.4460 0.7592 33 1 3.6450 3.3433 -1.0117 34 1 5.3347 5.6292 -1.4139 35 1 4.8036 5.4256 0.2826 36 1 6.6185 7.3391 -0.3145 37 1 6.8623 6.3324 1.1522 38 1 8.2741 7.0413 -2.0641 39 1 12.4567 6.2435 -0.2071 40 1 8.2038 3.7360 0.3700 41 1 8.0538 3.6654 -1.4080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:57 Heat of formation + Delta-G solvation = -177.148263 kcal Electronic energy + Delta-G solvation = -21618.088912 eV Core-core repulsion = 18303.247456 eV Total energy + Delta-G solvation = -3314.841456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20429 -39.56113 -38.31218 -36.31909 -34.97680 -34.49756 -32.61209 -31.45106 -30.15704 -28.39666 -26.64787 -24.30465 -23.09117 -22.07479 -21.52838 -20.27915 -19.36642 -18.14005 -17.59865 -17.21854 -17.10155 -16.67230 -16.25644 -16.07937 -15.43094 -15.19764 -14.87842 -14.81282 -14.32379 -14.19422 -13.98748 -13.66315 -13.46169 -13.30726 -12.88016 -12.64822 -12.59420 -12.54083 -12.35341 -12.15597 -12.11262 -12.03893 -11.62324 -11.48786 -11.27302 -11.00084 -10.77483 -10.66741 -10.33313 -9.58953 -8.40399 -6.52751 1.40697 1.46289 1.63586 1.70323 2.05954 2.36806 2.93407 3.40809 3.49872 3.67659 3.74212 3.82603 4.10338 4.13618 4.25278 4.28160 4.34240 4.45878 4.50416 4.60508 4.67142 4.74703 4.76198 4.88286 4.95305 4.97157 5.03788 5.12801 5.20075 5.26217 5.29938 5.36020 5.42374 5.50807 5.52576 6.03250 6.55813 6.66012 6.96145 7.00923 7.23292 7.27812 8.72659 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038304 B = 0.003984 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.820438 B = 7026.986878 C = 7193.923855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.138 4.138 4 C 0.122 3.878 5 H 0.072 0.928 6 O -0.573 6.573 7 C -0.155 4.155 8 C 0.510 3.490 9 O -0.590 6.590 10 N -0.620 5.620 11 C 0.105 3.895 12 C -0.139 4.139 13 C 0.215 3.785 14 O -0.567 6.567 15 C -0.547 4.547 16 H 0.050 0.950 17 C 0.029 3.971 18 N -0.932 5.932 19 Si 0.992 3.008 20 H -0.267 1.267 21 H -0.334 1.334 22 H -0.276 1.276 23 C 0.119 3.881 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.382 0.618 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.388 0.612 39 H 0.268 0.732 40 H 0.046 0.954 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.454 -2.527 -1.720 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.176 4.176 4 C 0.062 3.938 5 H 0.090 0.910 6 O -0.380 6.380 7 C -0.194 4.194 8 C 0.300 3.700 9 O -0.470 6.470 10 N -0.354 5.354 11 C -0.017 4.017 12 C -0.177 4.177 13 C 0.175 3.825 14 O -0.376 6.376 15 C -0.585 4.585 16 H 0.068 0.932 17 C -0.172 4.172 18 N -0.570 5.570 19 Si 0.825 3.175 20 H -0.193 1.193 21 H -0.266 1.266 22 H -0.202 1.202 23 C -0.005 4.005 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -23.824 -4.155 -2.208 24.285 hybrid contribution 1.149 0.481 -0.069 1.248 sum -22.675 -3.674 -2.277 23.084 Atomic orbital electron populations 1.21757 0.94634 1.01863 1.02338 1.21460 0.96506 0.96654 1.01628 1.22251 0.92922 0.97853 1.04535 1.21697 0.93520 0.91156 0.87430 0.90999 1.86697 1.77760 1.57345 1.16201 1.22504 0.88503 1.00943 1.07490 1.21299 0.91734 0.81459 0.75458 1.90701 1.71753 1.32211 1.52368 1.48874 1.07266 1.07692 1.71568 1.22564 0.96645 0.79608 1.02847 1.23326 0.93588 0.99775 1.01038 1.19957 0.93506 0.89375 0.79690 1.86091 1.93886 1.29801 1.27852 1.21507 0.90845 1.46840 0.99286 0.93200 1.25803 0.95355 0.93785 1.02219 1.70061 0.99502 1.46917 1.40494 0.85037 0.73148 0.79349 0.79945 1.19250 1.26580 1.20224 1.22192 0.81099 0.98128 0.99049 0.92049 0.92129 0.92847 0.93182 0.92616 0.89470 0.89300 0.77010 0.85502 0.85305 0.89641 0.87170 0.87587 0.91137 0.76199 0.92357 0.93595 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.90 5.83 30.59 0.18 -1.72 16 3 C -0.14 -1.79 4.89 30.59 0.15 -1.64 16 4 C 0.12 2.57 2.51 30.59 0.08 2.65 16 5 H 0.07 1.95 7.95 -2.39 -0.02 1.94 16 6 O -0.57 -14.74 12.11 -135.18 -1.64 -16.38 16 7 C -0.15 -3.04 4.39 29.85 0.13 -2.91 16 8 C 0.51 17.49 7.73 87.66 0.68 18.16 16 9 O -0.59 -26.76 15.75 10.76 0.17 -26.59 16 10 N -0.62 -21.85 3.33 -811.79 -2.70 -24.55 16 11 C 0.10 2.62 6.68 86.86 0.58 3.20 16 12 C -0.14 -4.34 6.27 32.09 0.20 -4.14 16 13 C 0.22 9.18 0.68 -10.25 -0.01 9.17 16 14 O -0.57 -22.69 8.89 -148.98 -1.32 -24.02 16 15 C -0.55 -29.30 8.71 25.60 0.22 -29.08 16 16 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 17 C 0.03 1.64 5.46 84.65 0.46 2.10 16 18 N -0.93 -56.90 13.96 21.45 0.30 -56.60 16 19 Si 0.99 49.29 24.90 68.60 1.71 51.00 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.33 -17.19 7.11 99.48 0.71 -16.48 16 22 H -0.28 -14.03 5.18 99.48 0.52 -13.52 16 23 C 0.12 5.41 5.64 86.73 0.49 5.90 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.99 7.82 -2.39 -0.02 0.97 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.38 6.42 9.05 -74.05 -0.67 5.75 16 32 H 0.13 1.68 7.85 -2.39 -0.02 1.66 16 33 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.11 1.82 7.47 -2.39 -0.02 1.80 16 36 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.32 8.00 -2.39 -0.02 2.30 16 38 H 0.39 12.84 9.07 -74.06 -0.67 12.17 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.05 2.35 7.81 -2.39 -0.02 2.33 16 41 H 0.04 1.86 6.30 -2.38 -0.02 1.84 16 Total: -1.00 -78.84 327.92 -0.12 -78.96 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -0.51 Total: 17.47 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 3.88 Total: 0.72 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.40 Total: -81.16 kcal Atomic # 8 Polarization: -64.20 SS G_CDS: -2.79 Total: -66.99 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.71 Total: 51.00 kcal Total: -78.84 -0.12 -78.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.188 kcal (2) G-P(sol) polarization free energy of solvation -78.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds