Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47529 * 2 1 4 4 C 1.52999 * 109.47529 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46709 * 304.99672 * 4 3 2 6 6 O 1.42901 * 109.47213 * 64.99541 * 4 3 2 7 7 C 1.53004 * 109.46938 * 184.99974 * 4 3 2 8 8 C 1.50700 * 109.46723 * 174.99795 * 7 4 3 9 9 O 1.21282 * 120.00254 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99819 * 179.97438 * 8 7 4 11 11 C 1.47021 * 125.64744 * 359.96801 * 10 8 7 12 12 C 1.54326 * 107.27002 * 181.08547 * 11 10 8 13 13 C 1.55151 * 102.94313 * 22.19392 * 12 11 10 14 14 O 1.42901 * 111.00842 * 82.56580 * 13 12 11 15 15 C 1.50698 * 111.00641 * 206.42337 * 13 12 11 16 16 H 1.07993 * 120.00138 * 112.19363 * 15 13 12 17 17 C 1.37875 * 119.99529 * 292.19405 * 15 13 12 18 18 N 1.31514 * 120.00358 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99716 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47110 * 90.00108 * 19 17 15 21 21 H 1.48504 * 109.47044 * 209.99832 * 19 17 15 22 22 H 1.48500 * 109.47158 * 329.99853 * 19 17 15 23 23 C 1.47421 * 125.64805 * 179.97438 * 10 8 7 24 24 H 1.08995 * 109.47097 * 60.00532 * 1 2 3 25 25 H 1.09000 * 109.46689 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47187 * 299.99963 * 1 2 3 27 27 H 1.08999 * 109.47390 * 239.99462 * 2 1 3 28 28 H 1.09003 * 109.47330 * 120.00097 * 2 1 3 29 29 H 1.08999 * 109.47224 * 59.99360 * 3 2 1 30 30 H 1.09002 * 109.46903 * 299.99809 * 3 2 1 31 31 H 0.96703 * 113.99359 * 60.00198 * 6 4 3 32 32 H 1.08995 * 109.47243 * 54.99868 * 7 4 3 33 33 H 1.08996 * 109.46877 * 294.99545 * 7 4 3 34 34 H 1.08996 * 109.88310 * 300.50411 * 11 10 8 35 35 H 1.09002 * 109.88672 * 61.51452 * 11 10 8 36 36 H 1.09000 * 110.72348 * 263.82382 * 12 11 10 37 37 H 1.09003 * 110.71705 * 140.55404 * 12 11 10 38 38 H 0.96708 * 113.99322 * 67.80350 * 14 13 12 39 39 H 0.96999 * 120.00046 * 179.97438 * 18 17 15 40 40 H 1.09002 * 110.36865 * 37.00989 * 23 10 8 41 41 H 1.09001 * 110.37117 * 274.68307 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0469 0.8728 -1.2201 7 6 4.0800 2.8795 0.1264 8 6 5.5818 2.8705 0.2506 9 8 6.1850 1.8183 0.2391 10 7 6.2548 4.0317 0.3733 11 6 5.6524 5.3726 0.3998 12 6 6.8053 6.3905 0.5264 13 6 8.0286 5.5979 -0.0051 14 8 8.0817 5.6342 -1.4327 15 6 9.3103 6.1166 0.5943 16 1 9.8734 5.5012 1.2803 17 6 9.7639 7.3767 0.2669 18 7 9.0784 8.1258 -0.5689 19 14 11.3523 8.0200 1.0104 20 1 12.4935 7.6523 0.1343 21 1 11.2785 9.4981 1.1329 22 1 11.5476 7.4210 2.3552 23 6 7.7170 4.1678 0.5031 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.7619 1.3471 -2.0131 32 1 3.6450 3.3433 1.0116 33 1 3.7920 3.4460 -0.7592 34 1 5.1012 5.5496 -0.5237 35 1 4.9815 5.4608 1.2543 36 1 6.9542 6.6772 1.5674 37 1 6.6154 7.2673 -0.0928 38 1 8.2741 6.5091 -1.7969 39 1 9.3974 9.0125 -0.7989 40 1 8.2234 3.4267 -0.1154 41 1 8.0169 4.0618 1.5457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = -156.590627 kcal Electronic energy + Delta-G solvation = -21508.119514 eV Core-core repulsion = 18194.169504 eV Total energy + Delta-G solvation = -3313.950010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.63637 -38.00894 -36.80788 -34.29722 -34.17398 -32.15820 -31.35860 -29.72109 -28.41064 -27.23261 -25.00628 -22.77850 -21.82643 -21.28843 -19.72723 -18.70117 -17.26185 -16.67736 -16.43368 -15.99710 -15.26650 -14.99728 -14.70155 -14.41648 -14.15606 -13.95735 -13.51932 -13.41681 -12.99986 -12.41163 -12.13754 -11.98913 -11.92723 -11.81020 -11.48161 -11.40082 -11.32369 -11.30658 -10.92264 -10.82946 -10.73721 -10.62221 -10.49213 -10.06645 -9.93898 -9.45090 -9.23222 -8.69488 -8.22992 -7.93996 -6.32102 -4.39666 3.15567 3.18620 3.25993 3.29119 3.55941 4.24309 4.40227 4.60270 4.74971 4.85437 4.94111 5.02348 5.13156 5.25579 5.36629 5.44518 5.53678 5.59636 5.61616 5.69536 5.75179 5.85674 5.87918 5.92374 6.00095 6.15931 6.19833 6.29099 6.45048 6.67250 6.87235 6.98370 7.27850 7.30830 7.71574 7.76707 7.97887 8.19207 8.62203 8.73798 9.29418 9.46290 10.75613 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.050948 B = 0.003540 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.446416 B = 7907.133275 C = 8048.204482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.152 4.152 4 C 0.124 3.876 5 H 0.103 0.897 6 O -0.545 6.545 7 C -0.170 4.170 8 C 0.521 3.479 9 O -0.540 6.540 10 N -0.610 5.610 11 C 0.101 3.899 12 C -0.139 4.139 13 C 0.248 3.752 14 O -0.584 6.584 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.120 3.880 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.366 0.634 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.385 0.615 39 H 0.269 0.731 40 H 0.070 0.930 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.905 -6.090 1.324 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.190 4.190 4 C 0.064 3.936 5 H 0.121 0.879 6 O -0.348 6.348 7 C -0.211 4.211 8 C 0.309 3.691 9 O -0.418 6.418 10 N -0.344 5.344 11 C -0.022 4.022 12 C -0.178 4.178 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.573 4.573 16 H 0.084 0.916 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.212 0.788 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.237 0.763 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.487 -7.603 1.715 16.450 hybrid contribution 0.563 1.788 0.014 1.874 sum -13.923 -5.815 1.729 15.188 Atomic orbital electron populations 1.21787 0.96119 1.01483 1.01588 1.21454 0.95251 0.96425 1.02775 1.22363 0.96087 0.97805 1.02711 1.21678 0.91220 0.91854 0.88844 0.87942 1.86717 1.76994 1.56189 1.14935 1.22438 0.94099 1.00007 1.04535 1.20011 0.89227 0.82733 0.77097 1.90699 1.70111 1.30258 1.50754 1.48641 1.09024 1.05664 1.71053 1.22122 0.97394 0.83130 0.99528 1.23199 0.94943 0.97575 1.02104 1.19589 0.91901 0.87993 0.79746 1.86107 1.94260 1.37762 1.21307 1.21493 1.07536 1.00590 1.27673 0.91640 1.24997 0.97388 0.96201 0.94471 1.69560 1.38913 1.10925 1.34445 0.86392 0.82968 0.77806 0.79677 1.20362 1.21038 1.19697 1.22358 0.78531 0.99265 1.00058 0.92880 0.92861 0.92922 0.91251 0.92011 0.91082 0.91608 0.78781 0.88608 0.89004 0.92598 0.93044 0.91382 0.89927 0.76296 0.92078 0.91167 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.09 5.83 -26.73 -0.16 -1.24 16 3 C -0.15 -1.36 4.89 -26.73 -0.13 -1.49 16 4 C 0.12 1.53 2.51 -26.73 -0.07 1.46 16 5 H 0.10 1.44 7.96 -51.93 -0.41 1.02 16 6 O -0.54 -7.69 12.11 -49.66 -0.60 -8.29 16 7 C -0.17 -2.21 4.57 -27.88 -0.13 -2.34 16 8 C 0.52 9.81 7.73 -10.99 -0.08 9.73 16 9 O -0.54 -12.19 15.67 -8.87 -0.14 -12.33 16 10 N -0.61 -12.10 3.33 -170.51 -0.57 -12.67 16 11 C 0.10 1.79 6.49 -3.06 -0.02 1.77 16 12 C -0.14 -2.94 5.64 -24.90 -0.14 -3.08 16 13 C 0.25 6.00 0.89 -89.61 -0.08 5.92 16 14 O -0.58 -15.05 13.18 -35.23 -0.46 -15.51 16 15 C -0.53 -13.87 8.25 -34.44 -0.28 -14.15 16 16 H 0.07 1.69 7.77 -52.49 -0.41 1.29 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 18 N -0.90 -22.94 10.79 55.43 0.60 -22.34 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.12 2.72 6.08 -2.52 -0.02 2.70 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.37 3.81 9.05 45.56 0.41 4.22 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 37 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 38 H 0.39 9.96 6.93 45.56 0.32 10.28 16 39 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 40 H 0.07 1.72 8.04 -51.93 -0.42 1.30 16 41 H 0.07 1.52 8.01 -51.93 -0.42 1.10 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -30.11 335.21 -7.49 -37.61 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -5.52 Total: 13.22 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.83 Total: 0.23 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.03 Total: -35.01 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -1.20 Total: -36.14 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.11 -7.49 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.982 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds