Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47529 * 2 1 4 4 C 1.52999 * 109.47529 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46709 * 304.99672 * 4 3 2 6 6 O 1.42901 * 109.47213 * 64.99541 * 4 3 2 7 7 C 1.53004 * 109.46938 * 184.99974 * 4 3 2 8 8 C 1.50700 * 109.46723 * 174.99795 * 7 4 3 9 9 O 1.21282 * 120.00254 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99819 * 179.97438 * 8 7 4 11 11 C 1.47021 * 125.64744 * 359.96801 * 10 8 7 12 12 C 1.54326 * 107.27002 * 181.08547 * 11 10 8 13 13 C 1.55151 * 102.94313 * 22.19392 * 12 11 10 14 14 O 1.42901 * 111.00842 * 82.56580 * 13 12 11 15 15 C 1.50698 * 111.00641 * 206.42337 * 13 12 11 16 16 H 1.07993 * 120.00138 * 112.19363 * 15 13 12 17 17 C 1.37875 * 119.99529 * 292.19405 * 15 13 12 18 18 N 1.31514 * 120.00358 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99716 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47110 * 90.00108 * 19 17 15 21 21 H 1.48504 * 109.47044 * 209.99832 * 19 17 15 22 22 H 1.48500 * 109.47158 * 329.99853 * 19 17 15 23 23 C 1.47421 * 125.64805 * 179.97438 * 10 8 7 24 24 H 1.08995 * 109.47097 * 60.00532 * 1 2 3 25 25 H 1.09000 * 109.46689 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47187 * 299.99963 * 1 2 3 27 27 H 1.08999 * 109.47390 * 239.99462 * 2 1 3 28 28 H 1.09003 * 109.47330 * 120.00097 * 2 1 3 29 29 H 1.08999 * 109.47224 * 59.99360 * 3 2 1 30 30 H 1.09002 * 109.46903 * 299.99809 * 3 2 1 31 31 H 0.96703 * 113.99359 * 60.00198 * 6 4 3 32 32 H 1.08995 * 109.47243 * 54.99868 * 7 4 3 33 33 H 1.08996 * 109.46877 * 294.99545 * 7 4 3 34 34 H 1.08996 * 109.88310 * 300.50411 * 11 10 8 35 35 H 1.09002 * 109.88672 * 61.51452 * 11 10 8 36 36 H 1.09000 * 110.72348 * 263.82382 * 12 11 10 37 37 H 1.09003 * 110.71705 * 140.55404 * 12 11 10 38 38 H 0.96708 * 113.99322 * 67.80350 * 14 13 12 39 39 H 0.96999 * 120.00046 * 179.97438 * 18 17 15 40 40 H 1.09002 * 110.36865 * 37.00989 * 23 10 8 41 41 H 1.09001 * 110.37117 * 274.68307 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0469 0.8728 -1.2201 7 6 4.0800 2.8795 0.1264 8 6 5.5818 2.8705 0.2506 9 8 6.1850 1.8183 0.2391 10 7 6.2548 4.0317 0.3733 11 6 5.6524 5.3726 0.3998 12 6 6.8053 6.3905 0.5264 13 6 8.0286 5.5979 -0.0051 14 8 8.0817 5.6342 -1.4327 15 6 9.3103 6.1166 0.5943 16 1 9.8734 5.5012 1.2803 17 6 9.7639 7.3767 0.2669 18 7 9.0784 8.1258 -0.5689 19 14 11.3523 8.0200 1.0104 20 1 12.4935 7.6523 0.1343 21 1 11.2785 9.4981 1.1329 22 1 11.5476 7.4210 2.3552 23 6 7.7170 4.1678 0.5031 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.7619 1.3471 -2.0131 32 1 3.6450 3.3433 1.0116 33 1 3.7920 3.4460 -0.7592 34 1 5.1012 5.5496 -0.5237 35 1 4.9815 5.4608 1.2543 36 1 6.9542 6.6772 1.5674 37 1 6.6154 7.2673 -0.0928 38 1 8.2741 6.5091 -1.7969 39 1 9.3974 9.0125 -0.7989 40 1 8.2234 3.4267 -0.1154 41 1 8.0169 4.0618 1.5457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = -178.803454 kcal Electronic energy + Delta-G solvation = -21509.082734 eV Core-core repulsion = 18194.169504 eV Total energy + Delta-G solvation = -3314.913231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.11276 -39.36189 -38.21720 -36.06877 -34.96901 -34.14624 -32.54636 -31.26914 -30.02243 -28.30897 -26.71327 -24.12818 -22.98627 -22.06780 -21.52571 -20.17499 -19.16007 -18.09539 -17.44751 -17.23327 -16.94749 -16.49333 -16.21773 -15.74025 -15.47080 -15.17671 -14.81794 -14.62128 -14.19105 -13.98337 -13.72000 -13.52277 -13.22722 -13.05002 -12.89446 -12.64357 -12.63850 -12.54018 -12.45458 -12.26070 -12.13404 -11.86965 -11.62145 -11.48098 -11.31474 -10.98780 -10.72528 -10.59116 -10.15047 -9.52919 -8.26270 -6.40656 1.41468 1.44790 1.53294 1.71584 2.10224 2.39683 2.98610 3.44882 3.65145 3.74830 3.83424 4.03301 4.11157 4.18245 4.29148 4.33324 4.39695 4.46617 4.60027 4.61340 4.69575 4.76368 4.76976 4.90028 4.96956 5.04671 5.13041 5.18714 5.29563 5.32537 5.42972 5.44414 5.51521 5.52900 5.76771 6.05389 6.61657 6.70567 6.94507 7.25030 7.30757 7.45111 8.80056 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.050948 B = 0.003540 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.446416 B = 7907.133275 C = 8048.204482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.139 4.139 4 C 0.124 3.876 5 H 0.077 0.923 6 O -0.573 6.573 7 C -0.157 4.157 8 C 0.512 3.488 9 O -0.587 6.587 10 N -0.615 5.615 11 C 0.108 3.892 12 C -0.131 4.131 13 C 0.233 3.767 14 O -0.596 6.596 15 C -0.562 4.562 16 H 0.054 0.946 17 C 0.036 3.964 18 N -0.909 5.909 19 Si 0.961 3.039 20 H -0.280 1.280 21 H -0.276 1.276 22 H -0.272 1.272 23 C 0.124 3.876 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.381 0.619 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.381 0.619 39 H 0.273 0.727 40 H 0.039 0.961 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -5.067 1.785 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.064 3.936 5 H 0.095 0.905 6 O -0.379 6.379 7 C -0.197 4.197 8 C 0.303 3.697 9 O -0.468 6.468 10 N -0.348 5.348 11 C -0.014 4.014 12 C -0.170 4.170 13 C 0.193 3.807 14 O -0.406 6.406 15 C -0.601 4.601 16 H 0.073 0.927 17 C -0.165 4.165 18 N -0.549 5.549 19 Si 0.787 3.213 20 H -0.206 1.206 21 H -0.201 1.201 22 H -0.196 1.196 23 C 0.000 4.000 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.229 0.771 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.233 0.767 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.727 -6.563 2.172 18.100 hybrid contribution 1.301 1.431 -0.159 1.940 sum -15.426 -5.133 2.014 16.382 Atomic orbital electron populations 1.21755 0.94678 1.01903 1.02277 1.21452 0.96463 0.96453 1.01745 1.22258 0.93041 0.97998 1.04386 1.21695 0.93443 0.90919 0.87519 0.90469 1.86679 1.77803 1.57250 1.16203 1.22494 0.89031 1.01053 1.07088 1.21151 0.91604 0.81468 0.75451 1.90678 1.71649 1.31862 1.52627 1.48764 1.07621 1.07110 1.71306 1.22189 0.96313 0.80598 1.02306 1.22989 0.94907 0.97754 1.01318 1.19784 0.92820 0.89240 0.78841 1.86092 1.94375 1.37586 1.22556 1.21715 1.08862 1.01160 1.28322 0.92742 1.25615 0.99907 0.96219 0.94798 1.69613 1.39697 1.11059 1.34516 0.85509 0.79498 0.77525 0.78775 1.20646 1.20097 1.19637 1.22096 0.80949 0.97679 0.99231 0.92212 0.92699 0.92139 0.92594 0.92905 0.89311 0.89853 0.77114 0.85368 0.86519 0.90760 0.88919 0.91669 0.90962 0.76749 0.91755 0.94260 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.13 16 2 C -0.12 -2.00 5.83 30.59 0.18 -1.82 16 3 C -0.14 -2.06 4.89 30.59 0.15 -1.91 16 4 C 0.12 2.83 2.51 30.60 0.08 2.91 16 5 H 0.08 2.14 7.96 -2.39 -0.02 2.12 16 6 O -0.57 -15.74 12.11 -135.19 -1.64 -17.38 16 7 C -0.16 -3.57 4.57 29.85 0.14 -3.43 16 8 C 0.51 18.72 7.73 87.66 0.68 19.40 16 9 O -0.59 -26.95 15.67 10.76 0.17 -26.78 16 10 N -0.61 -23.68 3.33 -811.75 -2.70 -26.38 16 11 C 0.11 3.49 6.49 86.73 0.56 4.05 16 12 C -0.13 -5.38 5.64 31.78 0.18 -5.21 16 13 C 0.23 11.39 0.89 -10.14 -0.01 11.38 16 14 O -0.60 -31.18 13.18 -148.98 -1.96 -33.14 16 15 C -0.56 -29.63 8.25 25.60 0.21 -29.42 16 16 H 0.05 2.90 7.77 -2.91 -0.02 2.87 16 17 C 0.04 1.81 5.30 84.65 0.45 2.26 16 18 N -0.91 -46.19 10.79 21.45 0.23 -45.96 16 19 Si 0.96 41.01 29.54 68.60 2.03 43.04 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 C 0.12 5.73 6.08 86.86 0.53 6.26 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 1.05 7.82 -2.39 -0.02 1.03 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.38 7.37 9.05 -74.05 -0.67 6.70 16 32 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 2.67 8.03 -2.39 -0.02 2.66 16 37 H 0.07 3.10 7.85 -2.39 -0.02 3.09 16 38 H 0.38 20.04 6.93 -74.05 -0.51 19.52 16 39 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 40 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 41 H 0.07 3.11 8.01 -2.39 -0.02 3.09 16 Total: -1.00 -66.81 335.21 -0.19 -67.00 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: -0.16 Total: 36.27 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 3.85 Total: 3.34 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -2.47 Total: -72.34 kcal Atomic # 8 Polarization: -73.87 SS G_CDS: -3.43 Total: -77.30 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -66.81 -0.19 -67.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.807 kcal (2) G-P(sol) polarization free energy of solvation -66.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds