Wall clock time and date at job start Mon Mar 30 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 O 1.42898 * 109.47319 * 65.00075 * 3 2 1 7 7 C 1.42899 * 114.00025 * 210.00010 * 6 3 2 8 8 C 1.50698 * 109.47148 * 179.97438 * 7 6 3 9 9 O 1.21277 * 119.99976 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99969 * 179.97438 * 8 7 6 11 11 C 1.47418 * 125.64690 * 0.02610 * 10 8 7 12 12 C 1.54917 * 104.83278 * 204.08822 * 11 10 8 13 13 C 1.55155 * 101.58058 * 322.99696 * 12 11 10 14 14 O 1.42901 * 110.71653 * 276.95688 * 13 12 11 15 15 C 1.50694 * 110.72102 * 153.86546 * 13 12 11 16 16 H 1.08007 * 119.99529 * 241.44857 * 15 13 12 17 17 C 1.37877 * 120.00546 * 61.44558 * 15 13 12 18 18 N 1.31514 * 119.99439 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00246 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46891 * 90.00315 * 19 17 15 21 21 H 1.48500 * 109.47159 * 210.00209 * 19 17 15 22 22 H 1.48496 * 109.47252 * 330.00243 * 19 17 15 23 23 C 1.47025 * 125.64770 * 179.71505 * 10 8 7 24 24 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 28 28 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 29 29 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 30 30 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 31 31 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47064 * 299.99806 * 7 6 3 33 33 H 1.09007 * 109.47276 * 60.00167 * 7 6 3 34 34 H 1.09003 * 110.36930 * 322.92990 * 11 10 8 35 35 H 1.09006 * 110.36917 * 85.25614 * 11 10 8 36 36 H 1.09000 * 110.99856 * 81.06362 * 12 11 10 37 37 H 1.08992 * 111.00814 * 204.87790 * 12 11 10 38 38 H 0.96709 * 114.00100 * 298.54906 * 14 13 12 39 39 H 0.97000 * 119.99829 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.88175 * 298.39751 * 23 10 8 41 41 H 1.09000 * 109.88051 * 59.56536 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 8 1.6621 2.0814 1.2210 7 6 1.4561 3.4903 1.1002 8 6 1.0628 4.0571 2.4400 9 8 0.9679 3.3265 3.4033 10 7 0.8167 5.3761 2.5677 11 6 0.8939 6.3733 1.4847 12 6 1.1451 7.7219 2.2046 13 6 0.2792 7.5592 3.4817 14 8 -1.0846 7.8908 3.2135 15 6 0.8208 8.4060 4.6044 16 1 1.1623 7.9392 5.5166 17 6 0.8804 9.7767 4.4673 18 7 0.4641 10.3451 3.3568 19 14 1.5524 10.8262 5.8588 20 1 3.0180 10.9945 5.6885 21 1 0.8953 12.1578 5.8362 22 1 1.2781 10.1609 7.1577 23 6 0.4205 6.0576 3.8088 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.9995 0.9052 0.7162 30 1 3.8533 0.9569 -1.0571 31 1 3.9283 2.4718 -0.1262 32 1 2.3770 3.9644 0.7609 33 1 0.6619 3.6808 0.3783 34 1 1.7212 6.1415 0.8139 35 1 -0.0453 6.4073 0.9326 36 1 2.1985 7.8386 2.4590 37 1 0.7964 8.5587 1.5994 38 1 -1.2185 8.8052 2.9285 39 1 0.5057 11.3094 3.2604 40 1 -0.5320 5.6617 4.1613 41 1 1.1876 5.9166 4.5702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:06 Heat of formation + Delta-G solvation = -141.658714 kcal Electronic energy + Delta-G solvation = -21554.214029 eV Core-core repulsion = 18240.911515 eV Total energy + Delta-G solvation = -3313.302514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64756 -38.38041 -37.07224 -34.33734 -33.83451 -32.24218 -30.19862 -29.88288 -28.67755 -27.34236 -24.83348 -23.73109 -22.32817 -21.13198 -19.86795 -18.86944 -17.33873 -17.00061 -16.55270 -15.97343 -15.27284 -14.97640 -14.70683 -14.33735 -14.07465 -13.95376 -13.66193 -13.17453 -13.00844 -12.80233 -12.44283 -12.09921 -11.95664 -11.76347 -11.55885 -11.43079 -11.38572 -11.37398 -11.13830 -10.90820 -10.67914 -10.65988 -10.50462 -10.14428 -9.65108 -9.45928 -9.27014 -8.69916 -8.26054 -8.04365 -6.31372 -4.38688 3.02189 3.03661 3.18792 3.26427 3.31580 4.03279 4.25631 4.60074 4.82217 4.87251 4.96075 5.01115 5.14270 5.18781 5.26184 5.39296 5.48111 5.50441 5.52641 5.70639 5.78531 5.84047 5.86357 5.96450 5.98545 6.02575 6.16958 6.22772 6.42784 6.66354 6.86063 6.90860 7.14791 7.26563 7.31533 7.70688 7.99578 8.06003 8.61068 8.65094 9.27502 9.36567 10.76233 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.003725 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.322031 B = 7514.544139 C = 7574.847321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.060 0.940 5 C -0.176 4.176 6 O -0.354 6.354 7 C 0.051 3.949 8 C 0.523 3.477 9 O -0.534 6.534 10 N -0.609 5.609 11 C 0.092 3.908 12 C -0.134 4.134 13 C 0.247 3.753 14 O -0.585 6.585 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.125 3.875 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.382 0.618 39 H 0.268 0.732 40 H 0.061 0.939 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -11.386 -10.868 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.023 3.977 4 H 0.078 0.922 5 C -0.234 4.234 6 O -0.273 6.273 7 C -0.029 4.029 8 C 0.309 3.691 9 O -0.411 6.411 10 N -0.344 5.344 11 C -0.031 4.031 12 C -0.173 4.173 13 C 0.207 3.793 14 O -0.394 6.394 15 C -0.573 4.573 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.003 3.997 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.232 0.768 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.057 -12.422 -10.094 16.296 hybrid contribution 0.587 1.520 0.124 1.634 sum 3.644 -10.902 -9.970 15.216 Atomic orbital electron populations 1.21750 0.95323 1.01568 1.02422 1.21611 0.96727 0.94719 1.02581 1.22216 0.94260 0.94166 0.87020 0.92151 1.22308 0.96180 1.02525 1.02363 1.88051 1.89326 1.18253 1.31641 1.22206 1.01150 0.83518 0.96042 1.19747 0.78356 0.80997 0.89953 1.90687 1.52160 1.57951 1.40308 1.48586 1.67129 1.05883 1.12800 1.22559 1.00091 0.90413 0.90000 1.23302 1.01555 0.93483 0.98935 1.19469 0.80147 0.88091 0.91632 1.86140 1.27797 1.35013 1.90448 1.21516 1.42328 0.91687 1.01751 0.91724 1.24982 0.94168 0.97862 0.95996 1.69692 1.47129 1.11288 1.25462 0.86403 0.78934 0.79344 0.82249 1.20480 1.21013 1.19652 1.22076 0.99503 0.92910 0.85166 0.91607 0.93110 0.92801 0.90866 0.90944 0.91599 0.91698 0.92388 0.90705 0.90662 0.92240 0.91796 0.91383 0.89272 0.76768 0.92216 0.92016 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.81 37.16 0.36 -1.16 16 2 C -0.12 -1.14 5.64 -26.73 -0.15 -1.29 16 3 C 0.08 0.88 2.72 -26.73 -0.07 0.81 16 4 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 5 C -0.18 -1.66 9.53 37.16 0.35 -1.30 16 6 O -0.35 -5.35 9.06 -55.14 -0.50 -5.85 16 7 C 0.05 0.74 5.23 36.00 0.19 0.93 16 8 C 0.52 10.16 7.93 -10.98 -0.09 10.07 16 9 O -0.53 -12.46 16.83 -14.35 -0.24 -12.70 16 10 N -0.61 -12.07 3.33 -170.51 -0.57 -12.64 16 11 C 0.09 1.61 6.68 -2.53 -0.02 1.59 16 12 C -0.13 -2.81 5.47 -24.58 -0.13 -2.94 16 13 C 0.25 5.87 0.85 -89.94 -0.08 5.80 16 14 O -0.59 -14.44 13.07 -35.23 -0.46 -14.90 16 15 C -0.53 -13.87 8.22 -34.44 -0.28 -14.15 16 16 H 0.06 1.69 7.58 -52.48 -0.40 1.30 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 18 N -0.90 -22.58 10.67 55.43 0.59 -21.99 16 19 Si 0.90 20.09 29.54 -169.99 -5.02 15.06 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.12 2.83 6.23 -3.06 -0.02 2.81 16 24 H 0.06 0.81 7.82 -51.93 -0.41 0.40 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.08 0.93 7.58 -51.93 -0.39 0.54 16 33 H 0.08 0.93 8.09 -51.92 -0.42 0.51 16 34 H 0.06 0.84 7.48 -51.93 -0.39 0.46 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 37 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 38 H 0.38 9.38 7.46 45.56 0.34 9.72 16 39 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.06 1.46 8.07 -51.93 -0.42 1.04 16 41 H 0.07 1.69 7.66 -51.93 -0.40 1.29 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -29.31 335.65 -7.36 -36.67 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.20 Total: 8.39 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.03 Total: 2.90 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.02 Total: -34.63 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.20 Total: -33.46 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.31 -7.36 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.985 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds