Wall clock time and date at job start Mon Mar 30 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 O 1.42898 * 109.47319 * 65.00075 * 3 2 1 7 7 C 1.42899 * 114.00025 * 210.00010 * 6 3 2 8 8 C 1.50698 * 109.47148 * 179.97438 * 7 6 3 9 9 O 1.21277 * 119.99976 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99969 * 179.97438 * 8 7 6 11 11 C 1.47418 * 125.64690 * 0.02610 * 10 8 7 12 12 C 1.54917 * 104.83278 * 204.08822 * 11 10 8 13 13 C 1.55155 * 101.58058 * 322.99696 * 12 11 10 14 14 O 1.42901 * 110.71653 * 276.95688 * 13 12 11 15 15 C 1.50694 * 110.72102 * 153.86546 * 13 12 11 16 16 H 1.08007 * 119.99529 * 241.44857 * 15 13 12 17 17 C 1.37877 * 120.00546 * 61.44558 * 15 13 12 18 18 N 1.31514 * 119.99439 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00246 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46891 * 90.00315 * 19 17 15 21 21 H 1.48500 * 109.47159 * 210.00209 * 19 17 15 22 22 H 1.48496 * 109.47252 * 330.00243 * 19 17 15 23 23 C 1.47025 * 125.64770 * 179.71505 * 10 8 7 24 24 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 28 28 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 29 29 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 30 30 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 31 31 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47064 * 299.99806 * 7 6 3 33 33 H 1.09007 * 109.47276 * 60.00167 * 7 6 3 34 34 H 1.09003 * 110.36930 * 322.92990 * 11 10 8 35 35 H 1.09006 * 110.36917 * 85.25614 * 11 10 8 36 36 H 1.09000 * 110.99856 * 81.06362 * 12 11 10 37 37 H 1.08992 * 111.00814 * 204.87790 * 12 11 10 38 38 H 0.96709 * 114.00100 * 298.54906 * 14 13 12 39 39 H 0.97000 * 119.99829 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.88175 * 298.39751 * 23 10 8 41 41 H 1.09000 * 109.88051 * 59.56536 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 8 1.6621 2.0814 1.2210 7 6 1.4561 3.4903 1.1002 8 6 1.0628 4.0571 2.4400 9 8 0.9679 3.3265 3.4033 10 7 0.8167 5.3761 2.5677 11 6 0.8939 6.3733 1.4847 12 6 1.1451 7.7219 2.2046 13 6 0.2792 7.5592 3.4817 14 8 -1.0846 7.8908 3.2135 15 6 0.8208 8.4060 4.6044 16 1 1.1623 7.9392 5.5166 17 6 0.8804 9.7767 4.4673 18 7 0.4641 10.3451 3.3568 19 14 1.5524 10.8262 5.8588 20 1 3.0180 10.9945 5.6885 21 1 0.8953 12.1578 5.8362 22 1 1.2781 10.1609 7.1577 23 6 0.4205 6.0576 3.8088 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.9995 0.9052 0.7162 30 1 3.8533 0.9569 -1.0571 31 1 3.9283 2.4718 -0.1262 32 1 2.3770 3.9644 0.7609 33 1 0.6619 3.6808 0.3783 34 1 1.7212 6.1415 0.8139 35 1 -0.0453 6.4073 0.9326 36 1 2.1985 7.8386 2.4590 37 1 0.7964 8.5587 1.5994 38 1 -1.2185 8.8052 2.9285 39 1 0.5057 11.3094 3.2604 40 1 -0.5320 5.6617 4.1613 41 1 1.1876 5.9166 4.5702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:05 Heat of formation + Delta-G solvation = -161.267969 kcal Electronic energy + Delta-G solvation = -21555.064350 eV Core-core repulsion = 18240.911515 eV Total energy + Delta-G solvation = -3314.152835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15428 -39.57886 -38.65175 -36.11939 -34.71899 -34.21204 -31.74633 -30.78428 -30.26237 -28.80506 -26.58672 -24.54400 -23.88612 -21.93944 -21.63705 -20.41233 -19.16884 -18.24354 -17.90333 -17.22275 -16.91627 -16.68562 -16.11894 -15.92503 -15.39468 -14.91789 -14.76451 -14.64062 -14.29566 -13.87628 -13.82409 -13.71717 -13.27270 -13.23747 -13.11823 -12.93031 -12.66149 -12.54728 -12.45403 -12.28308 -12.24772 -11.98507 -11.90477 -11.45889 -11.28015 -10.88463 -10.62638 -10.57627 -10.15231 -9.67535 -8.25291 -6.39331 1.40999 1.44500 1.52673 1.53399 1.71242 2.39126 2.90585 3.00227 3.51925 3.83897 3.92542 3.97123 4.06808 4.13603 4.21028 4.25830 4.26898 4.42941 4.45411 4.57248 4.65172 4.69272 4.74267 4.83714 4.90382 5.06783 5.11121 5.15834 5.19621 5.24834 5.31648 5.45012 5.46375 5.53859 5.76016 6.07433 6.20449 6.54831 6.64181 7.09681 7.30766 7.40536 8.80648 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.003725 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.322031 B = 7514.544139 C = 7574.847321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.073 3.927 4 H 0.082 0.918 5 C -0.174 4.174 6 O -0.388 6.388 7 C 0.061 3.939 8 C 0.515 3.485 9 O -0.584 6.584 10 N -0.611 5.611 11 C 0.100 3.900 12 C -0.125 4.125 13 C 0.235 3.765 14 O -0.592 6.592 15 C -0.565 4.565 16 H 0.048 0.952 17 C 0.040 3.960 18 N -0.903 5.903 19 Si 0.958 3.042 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.279 1.279 23 C 0.130 3.870 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.380 0.620 39 H 0.272 0.728 40 H 0.041 0.959 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.128 -11.505 -13.396 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C 0.016 3.984 4 H 0.100 0.900 5 C -0.231 4.231 6 O -0.307 6.307 7 C -0.018 4.018 8 C 0.305 3.695 9 O -0.464 6.464 10 N -0.345 5.345 11 C -0.021 4.021 12 C -0.164 4.164 13 C 0.195 3.805 14 O -0.401 6.401 15 C -0.603 4.603 16 H 0.067 0.933 17 C -0.162 4.162 18 N -0.542 5.542 19 Si 0.783 3.217 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.205 1.205 23 C 0.007 3.993 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.962 -12.537 -12.662 18.254 hybrid contribution 0.280 1.528 0.927 1.809 sum 4.243 -11.009 -11.735 16.640 Atomic orbital electron populations 1.21736 0.95758 1.02010 1.01463 1.21666 0.96334 0.94391 1.03222 1.22526 0.95284 0.94462 0.86088 0.89968 1.22301 0.95048 1.02701 1.03072 1.88031 1.89821 1.18473 1.34391 1.22194 1.03303 0.83656 0.92674 1.20796 0.76935 0.80226 0.91556 1.90658 1.54191 1.59011 1.42548 1.48650 1.66951 1.06663 1.12214 1.22642 1.02649 0.87508 0.89320 1.23079 1.00085 0.95537 0.97668 1.19586 0.80040 0.88133 0.92708 1.86125 1.28645 1.34826 1.90531 1.21714 1.43667 0.92764 1.02203 0.93333 1.25543 0.94244 0.98461 0.97939 1.69736 1.46700 1.11654 1.26062 0.85568 0.78620 0.77972 0.79503 1.19847 1.20238 1.20458 1.21787 0.98058 0.92883 0.86609 0.94727 0.91775 0.91771 0.87949 0.92509 0.93045 0.89165 0.92302 0.87777 0.87732 0.87669 0.90420 0.92363 0.89865 0.76978 0.91828 0.94013 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.81 71.98 0.71 -2.08 16 2 C -0.12 -2.02 5.64 30.59 0.17 -1.85 16 3 C 0.07 1.38 2.72 30.59 0.08 1.46 16 4 H 0.08 1.19 7.79 -2.39 -0.02 1.17 16 5 C -0.17 -2.76 9.53 71.98 0.69 -2.07 16 6 O -0.39 -11.08 9.06 -129.94 -1.18 -12.26 16 7 C 0.06 1.59 5.23 71.24 0.37 1.97 16 8 C 0.52 19.65 7.93 87.66 0.69 20.35 16 9 O -0.58 -27.88 16.83 16.02 0.27 -27.61 16 10 N -0.61 -23.74 3.33 -811.76 -2.70 -26.44 16 11 C 0.10 3.23 6.68 86.86 0.58 3.81 16 12 C -0.12 -5.12 5.47 31.99 0.17 -4.95 16 13 C 0.24 11.35 0.85 -10.35 -0.01 11.34 16 14 O -0.59 -29.58 13.07 -148.98 -1.95 -31.53 16 15 C -0.57 -29.95 8.22 25.60 0.21 -29.74 16 16 H 0.05 2.65 7.58 -2.91 -0.02 2.62 16 17 C 0.04 2.02 5.28 84.65 0.45 2.47 16 18 N -0.90 -45.03 10.67 21.45 0.23 -44.80 16 19 Si 0.96 41.12 29.54 68.60 2.03 43.15 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 C 0.13 6.05 6.23 86.73 0.54 6.59 16 24 H 0.03 0.84 7.82 -2.39 -0.02 0.82 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.92 7.87 -2.39 -0.02 0.90 16 32 H 0.10 2.13 7.58 -2.39 -0.02 2.11 16 33 H 0.11 2.14 8.09 -2.38 -0.02 2.12 16 34 H 0.11 2.49 7.48 -2.39 -0.02 2.47 16 35 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 37 H 0.08 3.50 7.54 -2.39 -0.02 3.48 16 38 H 0.38 18.82 7.46 -74.05 -0.55 18.27 16 39 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 40 H 0.04 2.06 8.07 -2.39 -0.02 2.04 16 41 H 0.06 2.78 7.66 -2.39 -0.02 2.76 16 Total: -1.00 -65.32 335.65 1.81 -63.51 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.45 Total: 28.69 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.66 Total: 7.30 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -2.47 Total: -71.24 kcal Atomic # 8 Polarization: -68.54 SS G_CDS: -2.85 Total: -71.40 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -65.32 1.81 -63.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.760 kcal (2) G-P(sol) polarization free energy of solvation -65.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds