Wall clock time and date at job start Mon Mar 30 2020 01:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46752 * 2 1 4 4 C 1.53004 * 109.46752 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47024 * 60.00096 * 4 3 2 6 6 O 1.42892 * 109.47205 * 299.99996 * 4 3 2 7 7 C 1.50700 * 109.46821 * 179.97438 * 4 3 2 8 8 O 1.21277 * 120.00235 * 335.87625 * 7 4 3 9 9 N 1.34782 * 119.99767 * 155.87094 * 7 4 3 10 10 C 1.47422 * 125.64591 * 184.88151 * 9 7 4 11 11 C 1.54907 * 104.82764 * 204.09137 * 10 9 7 12 12 C 1.55151 * 101.58358 * 322.98725 * 11 10 9 13 13 O 1.42905 * 110.72055 * 277.14123 * 12 11 10 14 14 C 1.50698 * 110.72375 * 154.04664 * 12 11 10 15 15 H 1.08004 * 119.99919 * 236.64615 * 14 12 11 16 16 C 1.37876 * 120.00193 * 56.64014 * 14 12 11 17 17 N 1.31517 * 120.00132 * 354.83419 * 16 14 12 18 18 Si 1.86801 * 120.00031 * 174.83208 * 16 14 12 19 19 H 1.48497 * 109.47288 * 95.00061 * 18 16 14 20 20 H 1.48505 * 109.47059 * 214.99981 * 18 16 14 21 21 H 1.48500 * 109.47285 * 334.99864 * 18 16 14 22 22 C 1.47015 * 125.64622 * 4.56369 * 9 7 4 23 23 H 1.09000 * 109.46845 * 299.99750 * 1 2 3 24 24 H 1.08993 * 109.47557 * 59.99793 * 1 2 3 25 25 H 1.08999 * 109.46943 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46845 * 240.00249 * 2 1 3 27 27 H 1.09000 * 109.47033 * 119.99801 * 2 1 3 28 28 H 1.09003 * 109.46757 * 60.00562 * 3 2 1 29 29 H 1.08994 * 109.46895 * 299.99987 * 3 2 1 30 30 H 1.08999 * 109.47191 * 299.99763 * 5 4 3 31 31 H 1.09008 * 109.47361 * 59.99611 * 5 4 3 32 32 H 1.09006 * 109.47273 * 179.97438 * 5 4 3 33 33 H 0.96699 * 114.00562 * 300.00073 * 6 4 3 34 34 H 1.09005 * 110.36725 * 322.92229 * 10 9 7 35 35 H 1.08997 * 110.37068 * 85.14091 * 10 9 7 36 36 H 1.09007 * 111.00736 * 81.06451 * 11 10 9 37 37 H 1.09006 * 111.00489 * 204.91368 * 11 10 9 38 38 H 0.96694 * 113.99839 * 298.54431 * 13 12 11 39 39 H 0.96996 * 120.00527 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.88747 * 298.39833 * 22 9 7 41 41 H 1.09002 * 109.88042 * 59.56437 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.7212 -1.2483 6 8 4.0458 0.7692 1.1677 7 6 4.0723 2.8634 0.0000 8 8 3.3708 3.7544 -0.4301 9 7 5.3010 3.1440 0.4775 10 6 5.8761 4.4928 0.6302 11 6 7.4096 4.2758 0.5994 12 6 7.5498 2.9341 1.3658 13 8 7.5476 3.1556 2.7776 14 6 8.8008 2.2073 0.9441 15 1 8.7361 1.2016 0.5558 16 6 10.0279 2.8263 1.0538 17 7 10.0984 4.0846 1.4299 18 14 11.5903 1.8777 0.6685 19 1 11.9868 2.1283 -0.7405 20 1 12.6775 2.3251 1.5757 21 1 11.3487 0.4256 0.8639 22 6 6.2873 2.1560 0.9385 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9563 -0.8899 30 1 3.7172 -0.3065 -1.2483 31 1 3.7175 1.2349 -2.1385 32 1 5.1705 0.7216 -1.2481 33 1 3.7602 1.1727 1.9987 34 1 5.5669 5.1329 -0.1962 35 1 5.5721 4.9295 1.5815 36 1 7.7702 4.1803 -0.4248 37 1 7.9285 5.0799 1.1212 38 1 8.2783 3.7063 3.0903 39 1 10.9617 4.5200 1.5075 40 1 5.8871 1.6005 1.7866 41 1 6.5331 1.4712 0.1269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:50 Heat of formation + Delta-G solvation = -167.296387 kcal Electronic energy + Delta-G solvation = -22437.459885 eV Core-core repulsion = 19123.045638 eV Total energy + Delta-G solvation = -3314.414247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58610 -39.39673 -38.19848 -36.10659 -35.07528 -34.24794 -32.22292 -31.22717 -30.01498 -27.73497 -26.97267 -25.38367 -23.26184 -21.69351 -21.50503 -20.56193 -19.19297 -18.44000 -17.43947 -16.90392 -16.78491 -16.56858 -16.29530 -15.98331 -15.44356 -14.81355 -14.73550 -14.33768 -14.08878 -13.88161 -13.60040 -13.38653 -13.29109 -13.15274 -13.05549 -12.91705 -12.71143 -12.69127 -12.49389 -12.36364 -12.19253 -11.95646 -11.88121 -11.57700 -11.38269 -11.14630 -10.70971 -10.39036 -10.10465 -9.60691 -8.20130 -6.36462 1.42526 1.43439 1.46804 1.55799 1.97620 2.40844 3.04140 3.14625 3.36018 3.72831 3.83454 3.87668 4.10811 4.21542 4.26457 4.30856 4.34868 4.56164 4.59499 4.69646 4.77071 4.78885 4.82638 4.95173 5.01725 5.04170 5.13120 5.20044 5.25715 5.29046 5.39556 5.46698 5.50881 5.55396 5.78919 6.09720 6.46058 6.59704 6.69828 7.04694 7.30742 7.38023 8.83525 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.004970 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.181082 B = 5632.267278 C = 6035.579934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.121 4.121 4 C 0.132 3.868 5 C -0.140 4.140 6 O -0.544 6.544 7 C 0.493 3.507 8 O -0.583 6.583 9 N -0.602 5.602 10 C 0.103 3.897 11 C -0.117 4.117 12 C 0.229 3.771 13 O -0.588 6.588 14 C -0.558 4.558 15 H 0.058 0.942 16 C 0.035 3.965 17 N -0.906 5.906 18 Si 0.957 3.043 19 H -0.279 1.279 20 H -0.281 1.281 21 H -0.271 1.271 22 C 0.135 3.865 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.388 0.612 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.374 0.626 39 H 0.268 0.732 40 H 0.083 0.917 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.167 -6.417 -1.974 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.160 4.160 4 C 0.088 3.912 5 C -0.197 4.197 6 O -0.351 6.351 7 C 0.282 3.718 8 O -0.464 6.464 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.156 4.156 12 C 0.189 3.811 13 O -0.395 6.395 14 C -0.597 4.597 15 H 0.076 0.924 16 C -0.166 4.166 17 N -0.544 5.544 18 Si 0.782 3.218 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.195 1.195 22 C 0.013 3.987 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.222 0.778 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.745 -6.595 -2.662 14.595 hybrid contribution 1.492 0.879 0.283 1.754 sum -11.253 -5.716 -2.379 12.844 Atomic orbital electron populations 1.21765 0.94937 1.02257 1.01828 1.21495 0.96258 0.94357 1.03170 1.22013 0.91400 0.99202 1.03341 1.21356 0.94885 0.85782 0.89188 1.21838 1.01782 1.02258 0.93800 1.86609 1.76815 1.55966 1.15733 1.21924 0.79853 0.93049 0.76979 1.90627 1.57041 1.49866 1.48915 1.48756 1.14418 1.08993 1.61193 1.22336 0.94771 0.84529 1.00352 1.23035 0.91239 1.00817 1.00487 1.19713 0.91548 0.90967 0.78848 1.86146 1.53640 1.74813 1.24910 1.21718 0.92228 1.01383 1.44321 0.92375 1.25618 1.01737 0.95484 0.93795 1.69915 1.26271 1.10878 1.47345 0.85568 0.79154 0.79158 0.77872 1.20454 1.20665 1.19549 1.22044 0.87277 0.90243 0.99131 0.92881 0.92749 0.91549 0.90948 0.91162 0.91836 0.90844 0.88177 0.90330 0.92579 0.76275 0.91867 0.91990 0.93335 0.90378 0.77789 0.92243 0.89848 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.08 5.44 30.60 0.17 -1.92 16 3 C -0.12 -2.82 3.98 30.60 0.12 -2.70 16 4 C 0.13 3.64 0.73 -11.54 -0.01 3.63 16 5 C -0.14 -3.52 8.47 71.98 0.61 -2.91 16 6 O -0.54 -14.46 9.36 -148.98 -1.39 -15.85 16 7 C 0.49 17.83 6.73 87.66 0.59 18.42 16 8 O -0.58 -24.09 16.31 -3.02 -0.05 -24.14 16 9 N -0.60 -23.46 3.32 -811.80 -2.70 -26.16 16 10 C 0.10 4.18 6.92 86.85 0.60 4.79 16 11 C -0.12 -5.31 5.18 31.98 0.17 -5.14 16 12 C 0.23 10.74 0.85 -10.35 -0.01 10.73 16 13 O -0.59 -28.20 13.06 -148.98 -1.95 -30.15 16 14 C -0.56 -28.48 8.23 25.60 0.21 -28.27 16 15 H 0.06 2.96 7.64 -2.91 -0.02 2.94 16 16 C 0.04 1.77 5.27 84.65 0.45 2.22 16 17 N -0.91 -46.12 10.68 21.45 0.23 -45.89 16 18 Si 0.96 40.56 29.54 68.60 2.03 42.58 16 19 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.14 5.50 5.15 86.73 0.45 5.95 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.07 1.22 6.43 -2.39 -0.02 1.20 16 27 H 0.07 1.28 7.68 -2.39 -0.02 1.27 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.84 7.87 -2.39 -0.02 1.82 16 30 H 0.10 2.03 6.43 -2.39 -0.02 2.02 16 31 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.06 1.59 6.91 -2.38 -0.02 1.58 16 33 H 0.39 8.68 8.92 -74.06 -0.66 8.01 16 34 H 0.06 2.53 7.99 -2.38 -0.02 2.52 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.05 2.32 8.04 -2.38 -0.02 2.30 16 37 H 0.08 3.72 7.28 -2.38 -0.02 3.70 16 38 H 0.37 18.10 8.05 -74.06 -0.60 17.51 16 39 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 40 H 0.08 3.27 6.30 -2.39 -0.02 3.26 16 41 H 0.07 2.85 6.49 -2.39 -0.02 2.83 16 Total: -1.00 -57.56 323.68 0.01 -57.55 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.22 Total: 38.87 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 4.05 Total: 3.19 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -2.47 Total: -72.05 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: -3.39 Total: -70.14 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -57.56 0.01 -57.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.742 kcal (2) G-P(sol) polarization free energy of solvation -57.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds