Wall clock time and date at job start Mon Mar 30 2020 01:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00047 * 2 1 4 4 C 1.52996 * 109.47519 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47048 * 60.00053 * 4 3 2 6 6 C 1.53005 * 109.46773 * 300.00195 * 4 3 2 7 7 C 1.50700 * 109.47123 * 180.02562 * 4 3 2 8 8 O 1.21278 * 120.00114 * 354.39769 * 7 4 3 9 9 N 1.34777 * 119.99629 * 174.12952 * 7 4 3 10 10 C 1.47020 * 125.64906 * 354.39622 * 9 7 4 11 11 C 1.54336 * 107.26681 * 178.85121 * 10 9 7 12 12 C 1.55163 * 103.01898 * 338.13733 * 11 10 9 13 13 O 1.42901 * 111.03431 * 277.21982 * 12 11 10 14 14 C 1.50697 * 111.00509 * 153.38460 * 12 11 10 15 15 H 1.08010 * 119.99746 * 247.80217 * 14 12 11 16 16 C 1.37875 * 120.00491 * 67.80444 * 14 12 11 17 17 N 1.31513 * 119.99754 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00263 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47146 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47000 * 119.99774 * 18 16 14 21 21 H 1.48497 * 109.47170 * 239.99921 * 18 16 14 22 22 C 1.47429 * 125.64712 * 174.70014 * 9 7 4 23 23 H 1.09007 * 109.47575 * 59.99714 * 1 2 3 24 24 H 1.09001 * 109.47526 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47441 * 299.99709 * 1 2 3 26 26 H 1.09004 * 109.46395 * 59.99965 * 3 2 1 27 27 H 1.09002 * 109.47329 * 300.00431 * 3 2 1 28 28 H 1.08993 * 109.46970 * 183.42528 * 5 4 3 29 29 H 1.08998 * 109.47136 * 303.42364 * 5 4 3 30 30 H 1.08997 * 109.47148 * 63.42667 * 5 4 3 31 31 H 1.08993 * 109.47408 * 284.70966 * 6 4 3 32 32 H 1.09001 * 109.47065 * 44.71346 * 6 4 3 33 33 H 1.09004 * 109.46901 * 164.70832 * 6 4 3 34 34 H 1.09004 * 109.88080 * 298.38791 * 10 9 7 35 35 H 1.08994 * 109.88808 * 59.55884 * 10 9 7 36 36 H 1.09001 * 110.84976 * 219.67174 * 11 10 9 37 37 H 1.08999 * 110.67042 * 96.51708 * 11 10 9 38 38 H 0.96699 * 114.00551 * 292.20802 * 13 12 11 39 39 H 0.97003 * 120.00352 * 180.02562 * 17 16 14 40 40 H 1.09005 * 110.36642 * 322.93058 * 22 9 7 41 41 H 1.08992 * 110.36333 * 85.25256 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9864 0.4258 -1.2502 6 6 3.9873 0.4252 1.2483 7 6 4.1483 2.5615 0.0000 8 8 3.4399 3.5407 -0.1017 9 7 5.4831 2.7048 0.1190 10 6 6.4423 1.6195 0.3707 11 6 7.8506 2.2502 0.3991 12 6 7.6582 3.5709 -0.3922 13 8 7.7372 3.3412 -1.8004 14 6 8.6603 4.6103 0.0396 15 1 8.3295 5.4930 0.5669 16 6 9.9992 4.4345 -0.2383 17 7 10.4020 3.3595 -0.8799 18 14 11.2414 5.7226 0.2977 19 1 10.5380 6.8278 0.9970 20 1 12.2302 5.1043 1.2171 21 1 11.9434 6.2599 -0.8955 22 6 6.2225 3.9768 0.0245 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8463 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 5.0670 0.2866 -1.2205 29 1 3.4955 -0.5469 -1.2814 30 1 3.7179 0.9969 -2.1389 31 1 3.9141 1.0789 2.1174 32 1 3.3492 -0.4463 1.3943 33 1 5.0207 0.1019 1.1228 34 1 6.2257 1.1483 1.3294 35 1 6.3850 0.8811 -0.4290 36 1 8.5749 1.6048 -0.0979 37 1 8.1593 2.4562 1.4240 38 1 8.6172 3.0846 -2.1084 39 1 11.3441 3.2355 -1.0751 40 1 5.7752 4.6203 -0.7331 41 1 6.2361 4.4803 0.9911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:57 Heat of formation + Delta-G solvation = -130.440147 kcal Electronic energy + Delta-G solvation = -22346.925365 eV Core-core repulsion = 19034.109324 eV Total energy + Delta-G solvation = -3312.816040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14994 -38.08922 -37.11610 -34.90591 -34.04549 -32.15945 -29.77876 -28.47735 -27.34423 -27.21392 -25.59462 -25.24945 -23.04550 -20.88150 -19.67548 -18.60161 -17.21487 -16.70284 -15.88495 -15.81622 -15.47184 -15.08628 -15.00114 -14.44951 -14.12546 -14.06442 -13.32732 -13.23932 -12.81278 -12.60372 -12.21146 -12.13776 -11.84242 -11.76127 -11.64208 -11.55979 -11.29615 -11.21098 -10.95766 -10.93678 -10.54370 -10.48967 -10.35887 -10.02994 -9.69165 -9.45580 -9.21494 -8.70287 -8.22202 -7.96778 -6.32453 -4.39978 3.04823 3.16894 3.25711 3.27942 3.32702 3.97987 4.24674 4.66854 4.91715 4.92011 4.99550 5.19568 5.23316 5.34522 5.51317 5.52114 5.58634 5.62894 5.68787 5.76433 5.83497 5.92708 5.93547 6.01082 6.13408 6.18323 6.34585 6.42328 6.48653 6.65109 6.87501 6.96066 7.08403 7.28462 7.30706 7.71299 7.96768 8.13324 8.59283 8.63934 9.29171 9.45727 10.75275 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.045996 B = 0.004360 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.608977 B = 6420.087273 C = 6575.450163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.087 3.913 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.149 4.149 7 C 0.535 3.465 8 O -0.559 6.559 9 N -0.600 5.600 10 C 0.090 3.910 11 C -0.141 4.141 12 C 0.249 3.751 13 O -0.584 6.584 14 C -0.535 4.535 15 H 0.066 0.934 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.120 3.880 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.385 0.615 39 H 0.269 0.731 40 H 0.069 0.931 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.946 -8.400 2.672 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.011 3.989 4 C -0.077 4.077 5 C -0.197 4.197 6 C -0.206 4.206 7 C 0.323 3.677 8 O -0.439 6.439 9 N -0.331 5.331 10 C -0.032 4.032 11 C -0.180 4.180 12 C 0.208 3.792 13 O -0.394 6.394 14 C -0.573 4.573 15 H 0.084 0.916 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.002 4.002 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.744 -7.985 2.575 14.433 hybrid contribution 1.189 0.700 0.275 1.406 sum -10.556 -7.285 2.850 13.138 Atomic orbital electron populations 1.22698 0.81194 1.02392 1.00023 1.87792 1.19399 1.28101 1.95477 1.22197 0.91585 0.83776 1.01380 1.20601 0.94372 0.93784 0.98982 1.21860 1.02220 1.00360 0.95221 1.22096 1.02717 1.00458 0.95364 1.19883 0.81167 0.90198 0.76451 1.90647 1.60435 1.40953 1.51823 1.48464 1.04997 1.10691 1.68936 1.22572 0.90895 0.90253 0.99510 1.23232 0.92577 1.00213 1.01944 1.19579 0.89161 0.90753 0.79675 1.86096 1.37734 1.91798 1.23809 1.21529 0.91582 1.06538 1.37665 0.91602 1.24988 0.98422 0.95559 0.94047 1.69569 1.16755 1.26627 1.40795 0.86345 0.80712 0.81367 0.78459 1.19572 1.20800 1.20755 1.22396 0.92343 0.84939 1.00500 0.94147 0.89775 0.94202 0.92733 0.92395 0.91223 0.90882 0.92444 0.92598 0.90860 0.90681 0.91940 0.91765 0.89872 0.91409 0.76245 0.92120 0.91206 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.91 9.07 -35.23 -0.32 -5.23 16 3 C 0.09 1.24 4.11 37.16 0.15 1.39 16 4 C -0.07 -1.12 0.58 -155.66 -0.09 -1.21 16 5 C -0.14 -1.97 8.20 37.16 0.30 -1.66 16 6 C -0.15 -1.95 7.58 37.16 0.28 -1.67 16 7 C 0.54 10.26 6.52 -10.99 -0.07 10.19 16 8 O -0.56 -12.35 16.29 5.56 0.09 -12.26 16 9 N -0.60 -11.85 3.32 -170.51 -0.57 -12.42 16 10 C 0.09 1.60 5.00 -3.06 -0.02 1.58 16 11 C -0.14 -2.96 5.64 -24.89 -0.14 -3.10 16 12 C 0.25 5.94 0.89 -89.62 -0.08 5.86 16 13 O -0.58 -14.82 13.18 -35.23 -0.46 -15.28 16 14 C -0.53 -13.75 8.25 -34.44 -0.28 -14.04 16 15 H 0.07 1.69 7.77 -52.48 -0.41 1.29 16 16 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 17 N -0.90 -22.76 10.79 55.43 0.60 -22.17 16 18 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.12 2.68 6.06 -2.53 -0.02 2.66 16 23 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 28 H 0.07 0.99 5.26 -51.93 -0.27 0.72 16 29 H 0.07 0.92 7.58 -51.93 -0.39 0.53 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.74 8.04 -51.93 -0.42 0.32 16 32 H 0.07 0.88 7.29 -51.93 -0.38 0.50 16 33 H 0.07 0.94 4.96 -51.93 -0.26 0.68 16 34 H 0.06 0.96 5.86 -51.93 -0.30 0.65 16 35 H 0.06 1.08 5.55 -51.93 -0.29 0.79 16 36 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 37 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 38 H 0.39 9.87 6.93 45.56 0.32 10.18 16 39 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 40 H 0.07 1.67 8.09 -51.93 -0.42 1.25 16 41 H 0.07 1.53 8.01 -51.93 -0.42 1.12 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -28.23 320.92 -5.52 -33.75 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.73 Total: 10.68 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 1.06 Total: 3.17 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.03 Total: -34.59 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.69 Total: -32.77 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.23 -5.52 -33.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.689 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds