Wall clock time and date at job start Mon Mar 30 2020 01:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00047 * 2 1 4 4 C 1.52996 * 109.47519 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47048 * 60.00053 * 4 3 2 6 6 C 1.53005 * 109.46773 * 300.00195 * 4 3 2 7 7 C 1.50700 * 109.47123 * 180.02562 * 4 3 2 8 8 O 1.21278 * 120.00114 * 354.39769 * 7 4 3 9 9 N 1.34777 * 119.99629 * 174.12952 * 7 4 3 10 10 C 1.47020 * 125.64906 * 354.39622 * 9 7 4 11 11 C 1.54336 * 107.26681 * 178.85121 * 10 9 7 12 12 C 1.55163 * 103.01898 * 338.13733 * 11 10 9 13 13 O 1.42901 * 111.03431 * 277.21982 * 12 11 10 14 14 C 1.50697 * 111.00509 * 153.38460 * 12 11 10 15 15 H 1.08010 * 119.99746 * 247.80217 * 14 12 11 16 16 C 1.37875 * 120.00491 * 67.80444 * 14 12 11 17 17 N 1.31513 * 119.99754 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00263 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47146 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47000 * 119.99774 * 18 16 14 21 21 H 1.48497 * 109.47170 * 239.99921 * 18 16 14 22 22 C 1.47429 * 125.64712 * 174.70014 * 9 7 4 23 23 H 1.09007 * 109.47575 * 59.99714 * 1 2 3 24 24 H 1.09001 * 109.47526 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47441 * 299.99709 * 1 2 3 26 26 H 1.09004 * 109.46395 * 59.99965 * 3 2 1 27 27 H 1.09002 * 109.47329 * 300.00431 * 3 2 1 28 28 H 1.08993 * 109.46970 * 183.42528 * 5 4 3 29 29 H 1.08998 * 109.47136 * 303.42364 * 5 4 3 30 30 H 1.08997 * 109.47148 * 63.42667 * 5 4 3 31 31 H 1.08993 * 109.47408 * 284.70966 * 6 4 3 32 32 H 1.09001 * 109.47065 * 44.71346 * 6 4 3 33 33 H 1.09004 * 109.46901 * 164.70832 * 6 4 3 34 34 H 1.09004 * 109.88080 * 298.38791 * 10 9 7 35 35 H 1.08994 * 109.88808 * 59.55884 * 10 9 7 36 36 H 1.09001 * 110.84976 * 219.67174 * 11 10 9 37 37 H 1.08999 * 110.67042 * 96.51708 * 11 10 9 38 38 H 0.96699 * 114.00551 * 292.20802 * 13 12 11 39 39 H 0.97003 * 120.00352 * 180.02562 * 17 16 14 40 40 H 1.09005 * 110.36642 * 322.93058 * 22 9 7 41 41 H 1.08992 * 110.36333 * 85.25256 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9864 0.4258 -1.2502 6 6 3.9873 0.4252 1.2483 7 6 4.1483 2.5615 0.0000 8 8 3.4399 3.5407 -0.1017 9 7 5.4831 2.7048 0.1190 10 6 6.4423 1.6195 0.3707 11 6 7.8506 2.2502 0.3991 12 6 7.6582 3.5709 -0.3922 13 8 7.7372 3.3412 -1.8004 14 6 8.6603 4.6103 0.0396 15 1 8.3295 5.4930 0.5669 16 6 9.9992 4.4345 -0.2383 17 7 10.4020 3.3595 -0.8799 18 14 11.2414 5.7226 0.2977 19 1 10.5380 6.8278 0.9970 20 1 12.2302 5.1043 1.2171 21 1 11.9434 6.2599 -0.8955 22 6 6.2225 3.9768 0.0245 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8463 0.8900 27 1 1.6885 1.8465 -0.8899 28 1 5.0670 0.2866 -1.2205 29 1 3.4955 -0.5469 -1.2814 30 1 3.7179 0.9969 -2.1389 31 1 3.9141 1.0789 2.1174 32 1 3.3492 -0.4463 1.3943 33 1 5.0207 0.1019 1.1228 34 1 6.2257 1.1483 1.3294 35 1 6.3850 0.8811 -0.4290 36 1 8.5749 1.6048 -0.0979 37 1 8.1593 2.4562 1.4240 38 1 8.6172 3.0846 -2.1084 39 1 11.3441 3.2355 -1.0751 40 1 5.7752 4.6203 -0.7331 41 1 6.2361 4.4803 0.9911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:56 Heat of formation + Delta-G solvation = -150.457861 kcal Electronic energy + Delta-G solvation = -22347.793398 eV Core-core repulsion = 19034.109324 eV Total energy + Delta-G solvation = -3313.684074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61920 -39.43442 -38.57316 -36.40997 -35.55158 -34.13144 -31.48048 -30.11330 -28.35805 -28.30474 -27.07613 -26.56894 -24.58921 -22.32642 -21.45798 -20.06667 -19.11141 -17.93986 -17.21850 -16.97618 -16.90310 -16.74787 -16.53266 -15.88638 -15.60827 -15.37294 -14.95096 -14.41993 -14.30532 -14.01633 -13.73699 -13.60487 -13.28437 -13.13673 -13.08483 -13.01673 -12.80520 -12.66543 -12.35233 -12.26697 -12.21626 -12.06495 -11.76310 -11.58996 -11.29596 -10.78326 -10.64585 -10.60120 -10.12688 -9.57073 -8.25267 -6.39518 1.41242 1.45880 1.53877 1.56124 1.90477 2.39867 2.85848 3.00089 3.39840 3.76800 3.78646 3.85865 4.01091 4.13904 4.28052 4.35080 4.42718 4.48342 4.58917 4.59546 4.61865 4.62848 4.76007 4.82291 4.86359 4.87712 4.90771 5.02768 5.17399 5.25910 5.29444 5.35221 5.45859 5.53515 5.77771 6.05488 6.14537 6.58428 6.64701 7.06625 7.31924 7.46219 8.81247 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.045996 B = 0.004360 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.608977 B = 6420.087273 C = 6575.450163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.095 3.905 4 C -0.069 4.069 5 C -0.134 4.134 6 C -0.144 4.144 7 C 0.529 3.471 8 O -0.595 6.595 9 N -0.602 5.602 10 C 0.097 3.903 11 C -0.132 4.132 12 C 0.235 3.765 13 O -0.595 6.595 14 C -0.562 4.562 15 H 0.055 0.945 16 C 0.037 3.963 17 N -0.909 5.909 18 Si 0.961 3.039 19 H -0.274 1.274 20 H -0.274 1.274 21 H -0.281 1.281 22 C 0.124 3.876 23 H 0.043 0.957 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.381 0.619 39 H 0.273 0.727 40 H 0.044 0.956 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 -10.097 3.485 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.017 3.983 4 C -0.072 4.072 5 C -0.191 4.191 6 C -0.201 4.201 7 C 0.319 3.681 8 O -0.477 6.477 9 N -0.333 5.333 10 C -0.025 4.025 11 C -0.170 4.170 12 C 0.195 3.805 13 O -0.405 6.405 14 C -0.600 4.600 15 H 0.074 0.926 16 C -0.164 4.164 17 N -0.548 5.548 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.200 1.200 21 H -0.207 1.207 22 C 0.001 3.999 23 H 0.062 0.938 24 H 0.125 0.875 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.233 0.767 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.059 -9.712 3.393 15.851 hybrid contribution 1.230 1.245 -0.013 1.750 sum -10.829 -8.467 3.380 14.156 Atomic orbital electron populations 1.22948 0.79394 1.04131 1.00589 1.87763 1.21292 1.26743 1.95513 1.21999 0.91087 0.84570 1.00601 1.20611 0.94799 0.91183 1.00655 1.21839 1.02305 1.00921 0.94054 1.22080 1.03511 1.00592 0.93894 1.20720 0.80569 0.91645 0.75169 1.90623 1.61122 1.42671 1.53243 1.48522 1.05583 1.10093 1.69119 1.22655 0.88355 0.89528 1.01912 1.23032 0.94452 0.98590 1.00960 1.19752 0.89493 0.92077 0.79159 1.86083 1.37415 1.91923 1.25059 1.21739 0.92680 1.07040 1.38517 0.92634 1.25596 0.99642 0.97190 0.94006 1.69621 1.17221 1.27326 1.40670 0.85461 0.78639 0.79182 0.78026 1.19893 1.19961 1.20691 1.22168 0.91985 0.86063 0.99643 0.93790 0.87453 0.93488 0.93179 0.93694 0.91265 0.88792 0.93748 0.92840 0.89161 0.89818 0.88578 0.90269 0.90851 0.91632 0.76705 0.91779 0.93714 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.39 -8.96 9.07 -148.98 -1.35 -10.31 16 3 C 0.09 2.56 4.11 71.98 0.30 2.85 16 4 C -0.07 -1.97 0.58 -52.93 -0.03 -2.00 16 5 C -0.13 -3.50 8.20 71.98 0.59 -2.91 16 6 C -0.14 -3.32 7.58 71.98 0.55 -2.77 16 7 C 0.53 20.03 6.52 87.66 0.57 20.60 16 8 O -0.59 -26.64 16.29 -3.02 -0.05 -26.69 16 9 N -0.60 -23.49 3.32 -811.77 -2.70 -26.18 16 10 C 0.10 3.25 5.00 86.73 0.43 3.69 16 11 C -0.13 -5.43 5.64 31.79 0.18 -5.25 16 12 C 0.24 11.35 0.89 -10.15 -0.01 11.34 16 13 O -0.59 -30.64 13.18 -148.98 -1.96 -32.61 16 14 C -0.56 -29.25 8.25 25.60 0.21 -29.04 16 15 H 0.06 2.92 7.77 -2.91 -0.02 2.90 16 16 C 0.04 1.85 5.30 84.65 0.45 2.30 16 17 N -0.91 -45.85 10.79 21.45 0.23 -45.61 16 18 Si 0.96 40.73 29.54 68.60 2.03 42.76 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 22 C 0.12 5.66 6.06 86.85 0.53 6.19 16 23 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.31 8.04 -2.39 -0.02 1.29 16 28 H 0.07 1.81 5.26 -2.39 -0.01 1.79 16 29 H 0.09 2.08 7.58 -2.39 -0.02 2.06 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.27 8.04 -2.39 -0.02 1.25 16 32 H 0.09 1.82 7.29 -2.39 -0.02 1.81 16 33 H 0.08 1.77 4.96 -2.38 -0.01 1.76 16 34 H 0.10 2.63 5.86 -2.39 -0.01 2.61 16 35 H 0.08 2.46 5.55 -2.39 -0.01 2.45 16 36 H 0.07 3.16 7.85 -2.39 -0.02 3.14 16 37 H 0.06 2.70 8.03 -2.39 -0.02 2.68 16 38 H 0.38 19.84 6.93 -74.06 -0.51 19.32 16 39 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 40 H 0.04 2.22 8.09 -2.38 -0.02 2.20 16 41 H 0.07 3.18 8.01 -2.39 -0.02 3.16 16 Total: -1.00 -60.44 320.92 1.72 -58.72 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.52 Total: 33.28 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.01 Total: 6.65 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.47 Total: -71.80 kcal Atomic # 8 Polarization: -66.24 SS G_CDS: -3.36 Total: -69.61 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -60.44 1.72 -58.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.738 kcal (2) G-P(sol) polarization free energy of solvation -60.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds