Wall clock time and date at job start Mon Mar 30 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99412 * 2 1 4 4 C 1.53006 * 109.46570 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47536 * 299.99501 * 4 3 2 6 6 C 1.52998 * 109.47086 * 60.00190 * 4 3 2 7 7 C 1.50703 * 109.46805 * 179.97438 * 4 3 2 8 8 O 1.21282 * 120.00046 * 350.42248 * 7 4 3 9 9 N 1.34771 * 120.00233 * 170.41906 * 7 4 3 10 10 C 1.47430 * 125.64571 * 3.31374 * 9 7 4 11 11 C 1.55132 * 104.72312 * 155.81548 * 10 9 7 12 12 C 1.55163 * 101.48299 * 37.29332 * 11 10 9 13 13 O 1.42904 * 110.71682 * 82.69580 * 12 11 10 14 14 C 1.50697 * 110.87288 * 205.89651 * 12 11 10 15 15 H 1.07996 * 120.00053 * 18.59801 * 14 12 11 16 16 C 1.37876 * 119.99961 * 198.60073 * 14 12 11 17 17 N 1.31510 * 119.99982 * 178.24566 * 16 14 12 18 18 Si 1.86800 * 120.00112 * 358.24505 * 16 14 12 19 19 H 1.48494 * 109.47354 * 93.81230 * 18 16 14 20 20 H 1.48502 * 109.46934 * 213.81885 * 18 16 14 21 21 H 1.48506 * 109.46955 * 333.81305 * 18 16 14 22 22 C 1.47021 * 125.64999 * 183.62160 * 9 7 4 23 23 H 1.08999 * 109.47393 * 60.00759 * 1 2 3 24 24 H 1.09005 * 109.46765 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47189 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.46893 * 299.98995 * 3 2 1 27 27 H 1.08995 * 109.47608 * 59.99863 * 3 2 1 28 28 H 1.08999 * 109.46861 * 59.99917 * 5 4 3 29 29 H 1.08996 * 109.47183 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47106 * 300.00919 * 5 4 3 31 31 H 1.08993 * 109.47626 * 52.74383 * 6 4 3 32 32 H 1.09001 * 109.47085 * 172.75031 * 6 4 3 33 33 H 1.09004 * 109.47099 * 292.74226 * 6 4 3 34 34 H 1.08993 * 110.36838 * 274.74902 * 10 9 7 35 35 H 1.09005 * 110.36474 * 37.06812 * 10 9 7 36 36 H 1.08995 * 111.19128 * 279.19601 * 11 10 9 37 37 H 1.08990 * 110.93777 * 155.28550 * 11 10 9 38 38 H 0.96707 * 114.00162 * 60.93598 * 13 12 11 39 39 H 0.97001 * 120.00098 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.88492 * 300.43771 * 22 9 7 41 41 H 1.08998 * 109.88067 * 61.60832 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9864 0.4259 1.2502 6 6 3.9873 0.4253 -1.2483 7 6 4.1483 2.5615 0.0000 8 8 3.4488 3.5366 -0.1756 9 7 5.4736 2.7093 0.1947 10 6 6.4466 1.6127 0.3508 11 6 7.8054 2.2275 -0.0761 12 6 7.6840 3.6676 0.4887 13 8 8.0305 3.6979 1.8747 14 6 8.5434 4.6259 -0.2949 15 1 8.8905 4.3570 -1.2816 16 6 8.8867 5.8459 0.2480 17 7 9.6651 6.6678 -0.4215 18 14 8.2463 6.3314 1.9342 19 1 9.2451 5.9609 2.9687 20 1 8.0146 7.7977 1.9724 21 1 6.9697 5.6215 2.2021 22 6 6.1877 3.9907 0.2928 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6885 1.8463 -0.8901 27 1 1.6885 1.8465 0.8899 28 1 3.5431 -0.5699 1.2503 29 1 5.0730 0.3402 1.2508 30 1 3.6643 0.9669 2.1399 31 1 3.5580 0.8939 -2.1338 32 1 5.0750 0.4505 -1.3151 33 1 3.6511 -0.6097 -1.1857 34 1 6.4855 1.2851 1.3896 35 1 6.1863 0.7789 -0.3013 36 1 7.9083 2.2408 -1.1611 37 1 8.6363 1.6952 0.3866 38 1 8.9380 3.4194 2.0595 39 1 9.9070 7.5260 -0.0394 40 1 6.0492 4.5635 -0.6241 41 1 5.8161 4.5577 1.1463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:58 Heat of formation + Delta-G solvation = -145.825825 kcal Electronic energy + Delta-G solvation = -22450.897876 eV Core-core repulsion = 19137.414662 eV Total energy + Delta-G solvation = -3313.483214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71018 -39.65132 -38.66439 -36.61599 -35.64996 -34.48436 -31.71278 -30.24145 -28.39370 -28.30249 -27.09319 -26.58227 -24.72312 -22.53054 -21.45871 -20.07817 -19.40675 -17.97254 -17.45717 -17.09422 -16.89917 -16.79387 -16.58773 -16.16002 -15.70704 -15.35326 -15.08890 -14.63155 -14.41949 -14.17318 -13.93762 -13.70769 -13.66876 -13.35041 -13.03230 -12.97274 -12.75017 -12.67853 -12.47565 -12.26161 -12.08464 -12.01084 -11.94728 -11.51384 -11.15187 -10.84447 -10.69230 -10.66336 -10.26736 -9.64704 -8.38187 -6.52402 1.41700 1.48041 1.51959 1.70600 1.85592 2.39558 2.84079 2.95370 3.36123 3.49253 3.76747 3.77665 3.82369 4.07696 4.21918 4.30097 4.40736 4.46025 4.46998 4.53355 4.59959 4.61019 4.75824 4.79966 4.86414 4.86536 4.90643 4.97908 5.04518 5.15144 5.25628 5.30152 5.30819 5.36644 5.53499 6.04870 6.12096 6.53323 6.58331 7.02836 7.04632 7.29287 8.74820 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034977 B = 0.004976 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.343378 B = 5626.109118 C = 5818.134642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.093 3.907 4 C -0.069 4.069 5 C -0.145 4.145 6 C -0.136 4.136 7 C 0.526 3.474 8 O -0.596 6.596 9 N -0.608 5.608 10 C 0.093 3.907 11 C -0.141 4.141 12 C 0.218 3.782 13 O -0.565 6.565 14 C -0.546 4.546 15 H 0.050 0.950 16 C 0.028 3.972 17 N -0.934 5.934 18 Si 0.988 3.012 19 H -0.272 1.272 20 H -0.336 1.336 21 H -0.259 1.259 22 C 0.119 3.881 23 H 0.044 0.956 24 H 0.108 0.892 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.386 0.614 39 H 0.267 0.733 40 H 0.050 0.950 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 -18.412 3.320 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.015 3.985 4 C -0.072 4.072 5 C -0.202 4.202 6 C -0.193 4.193 7 C 0.316 3.684 8 O -0.478 6.478 9 N -0.340 5.340 10 C -0.027 4.027 11 C -0.179 4.179 12 C 0.178 3.822 13 O -0.374 6.374 14 C -0.583 4.583 15 H 0.068 0.932 16 C -0.172 4.172 17 N -0.572 5.572 18 Si 0.821 3.179 19 H -0.197 1.197 20 H -0.268 1.268 21 H -0.184 1.184 22 C -0.004 4.004 23 H 0.062 0.938 24 H 0.127 0.873 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.236 0.764 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.548 -17.750 3.254 21.979 hybrid contribution 0.277 1.513 0.293 1.566 sum -12.271 -16.236 3.548 20.659 Atomic orbital electron populations 1.22948 0.79490 1.04157 1.00497 1.87765 1.21191 1.26602 1.95511 1.22051 0.91386 0.84626 1.00391 1.20625 0.94561 0.90950 1.01092 1.22099 1.03556 1.00911 0.93641 1.21916 1.02144 1.01358 0.93857 1.20848 0.80543 0.91704 0.75286 1.90647 1.61556 1.43254 1.52326 1.48641 1.06533 1.09004 1.69774 1.23039 0.87179 0.89657 1.02844 1.23372 0.97381 0.95394 1.01716 1.19832 0.89251 0.93795 0.79372 1.86232 1.36132 1.88672 1.26394 1.21514 1.31754 1.01545 1.03528 0.93223 1.25830 0.93694 0.95927 1.01744 1.70063 1.36550 1.10214 1.40414 0.85095 0.80586 0.72759 0.79501 1.19747 1.26849 1.18412 1.22294 0.92760 0.85815 0.99508 0.93757 0.87347 0.93753 0.93579 0.93855 0.88978 0.89568 0.93445 0.93088 0.90672 0.88563 0.88961 0.87124 0.91005 0.87377 0.76443 0.92424 0.93142 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.39 -8.36 9.49 -148.98 -1.41 -9.78 16 3 C 0.09 2.39 4.15 71.98 0.30 2.68 16 4 C -0.07 -1.78 0.58 -52.93 -0.03 -1.81 16 5 C -0.15 -3.00 8.01 71.98 0.58 -2.43 16 6 C -0.14 -2.85 8.07 71.98 0.58 -2.27 16 7 C 0.53 18.85 6.58 87.66 0.58 19.43 16 8 O -0.60 -26.51 16.31 -3.04 -0.05 -26.56 16 9 N -0.61 -21.76 3.30 -811.34 -2.68 -24.44 16 10 C 0.09 2.47 4.83 86.93 0.42 2.89 16 11 C -0.14 -4.40 6.26 32.07 0.20 -4.20 16 12 C 0.22 9.15 0.68 -10.35 -0.01 9.14 16 13 O -0.56 -22.09 8.56 -148.98 -1.28 -23.36 16 14 C -0.55 -28.85 8.72 25.60 0.22 -28.63 16 15 H 0.05 2.89 7.98 -2.91 -0.02 2.87 16 16 C 0.03 1.59 5.47 84.65 0.46 2.06 16 17 N -0.93 -56.79 13.96 21.45 0.30 -56.49 16 18 Si 0.99 48.08 25.24 68.60 1.73 49.81 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.34 -17.18 7.11 99.48 0.71 -16.47 16 21 H -0.26 -12.55 4.71 99.48 0.47 -12.08 16 22 C 0.12 5.32 5.66 86.73 0.49 5.81 16 23 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.05 1.29 7.99 -2.39 -0.02 1.27 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 1.60 7.68 -2.39 -0.02 1.58 16 29 H 0.09 1.58 4.12 -2.39 -0.01 1.57 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.46 5.11 -2.39 -0.01 1.45 16 33 H 0.10 1.64 7.90 -2.38 -0.02 1.62 16 34 H 0.09 2.13 6.94 -2.39 -0.02 2.11 16 35 H 0.11 2.22 4.56 -2.38 -0.01 2.21 16 36 H 0.07 2.38 7.99 -2.39 -0.02 2.36 16 37 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.39 12.37 9.05 -74.05 -0.67 11.70 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.05 2.52 7.81 -2.39 -0.02 2.50 16 41 H 0.04 2.09 6.39 -2.39 -0.02 2.08 16 Total: -1.00 -72.02 314.61 1.78 -70.24 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.12 Total: 16.26 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 5.04 Total: 4.31 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.38 Total: -80.92 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -2.74 Total: -59.70 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.73 Total: 49.81 kcal Total: -72.02 1.78 -70.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.589 kcal (2) G-P(sol) polarization free energy of solvation -72.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds