Wall clock time and date at job start Mon Mar 30 2020 01:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00072 * 2 1 4 4 H 1.09003 * 109.46934 * 29.99756 * 3 2 1 5 5 C 1.50697 * 109.47042 * 270.00086 * 3 2 1 6 6 O 1.21285 * 119.99894 * 351.61574 * 5 3 2 7 7 N 1.34773 * 120.00036 * 171.61468 * 5 3 2 8 8 C 1.47021 * 125.64951 * 184.50195 * 7 5 3 9 9 C 1.54332 * 107.26645 * 178.85230 * 8 7 5 10 10 C 1.55158 * 103.02197 * 338.13837 * 9 8 7 11 11 O 1.42893 * 111.00310 * 277.23510 * 10 9 8 12 12 C 1.50702 * 111.03562 * 153.39545 * 10 9 8 13 13 H 1.08005 * 119.99716 * 247.78572 * 12 10 9 14 14 C 1.37871 * 119.99840 * 67.78715 * 12 10 9 15 15 N 1.31519 * 120.00371 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99784 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47329 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46938 * 120.00365 * 16 14 12 19 19 H 1.48507 * 109.47202 * 240.00208 * 16 14 12 20 20 C 1.47427 * 125.64985 * 4.81166 * 7 5 3 21 21 C 1.52996 * 109.47253 * 150.00043 * 3 2 1 22 22 C 1.53004 * 109.47120 * 294.47146 * 21 3 2 23 23 C 1.52994 * 109.47139 * 54.47135 * 21 3 2 24 24 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47125 * 300.00201 * 1 2 3 26 26 H 1.08999 * 109.47111 * 60.00232 * 1 2 3 27 27 H 1.09003 * 109.88314 * 298.39607 * 8 7 5 28 28 H 1.09005 * 109.88345 * 59.55814 * 8 7 5 29 29 H 1.09007 * 110.84887 * 219.66675 * 9 8 7 30 30 H 1.09004 * 110.51709 * 96.45359 * 9 8 7 31 31 H 0.96698 * 114.00533 * 292.19146 * 11 10 9 32 32 H 0.96999 * 120.00051 * 179.97438 * 15 14 12 33 33 H 1.08999 * 110.36156 * 322.93013 * 20 7 5 34 34 H 1.08997 * 110.36493 * 85.14012 * 20 7 5 35 35 H 1.08996 * 109.47443 * 174.47498 * 21 3 2 36 36 H 1.09004 * 109.46923 * 59.99974 * 22 21 3 37 37 H 1.09001 * 109.47391 * 179.97438 * 22 21 3 38 38 H 1.08995 * 109.47302 * 300.00201 * 22 21 3 39 39 H 1.09000 * 109.47103 * 179.97438 * 23 21 3 40 40 H 1.08994 * 109.47706 * 300.00224 * 23 21 3 41 41 H 1.08998 * 109.47175 * 60.00707 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2145 1.7643 -1.4208 6 8 2.0381 0.9917 -2.3389 7 7 2.5932 3.0333 -1.6712 8 6 2.7372 3.6374 -3.0039 9 6 3.1598 5.1072 -2.7973 10 6 2.6898 5.4059 -1.3491 11 8 1.3032 5.7500 -1.3214 12 6 3.5256 6.4920 -0.7223 13 1 4.1846 6.2589 0.1010 14 6 3.4488 7.7831 -1.1997 15 7 2.6466 8.0669 -2.2026 16 14 4.4843 9.1295 -0.4223 17 1 5.2972 8.5549 0.6796 18 1 5.3848 9.7157 -1.4474 19 1 3.5945 10.1883 0.1186 20 6 2.9379 4.0437 -0.6545 21 6 3.3589 1.2632 0.7212 22 6 3.1372 0.9314 2.1983 23 6 4.2442 0.1901 0.0847 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.5015 3.1061 -3.5711 28 1 1.7853 3.5981 -3.5335 29 1 2.6544 5.7599 -3.5092 30 1 4.2419 5.2089 -2.8803 31 1 1.0990 6.5952 -1.7446 32 1 2.5924 8.9753 -2.5382 33 1 2.2925 3.9395 0.2177 34 1 3.9843 3.9487 -0.3648 35 1 3.8469 2.2342 0.6363 36 1 2.6492 -0.0396 2.2832 37 1 4.0980 0.9008 2.7121 38 1 2.5064 1.6959 2.6518 39 1 5.2052 0.1603 0.5982 40 1 3.7564 -0.7809 0.1696 41 1 4.4023 0.4266 -0.9675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:08 Heat of formation + Delta-G solvation = -157.242910 kcal Electronic energy + Delta-G solvation = -22611.487822 eV Core-core repulsion = 19297.509526 eV Total energy + Delta-G solvation = -3313.978295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50793 -39.52938 -38.23565 -36.22524 -35.65572 -34.10564 -31.85696 -30.16912 -28.78145 -28.02955 -27.10706 -26.78502 -23.85103 -21.77620 -21.42099 -20.49563 -19.12520 -18.35060 -17.70499 -17.05101 -16.93069 -16.69754 -16.20837 -15.89387 -15.36017 -15.07025 -14.77891 -14.70787 -14.24699 -13.93334 -13.79880 -13.65133 -13.36278 -13.16933 -13.00514 -12.87483 -12.64304 -12.56409 -12.45035 -12.21119 -12.13054 -11.93467 -11.76757 -11.66908 -11.56647 -11.23418 -10.64645 -10.32871 -10.12441 -9.63358 -8.22505 -6.37231 1.44825 1.49640 1.51018 1.58992 1.91597 2.41616 2.76232 3.03184 3.41682 3.72241 3.76414 3.86677 4.07684 4.16721 4.21825 4.27601 4.35058 4.47542 4.49525 4.57579 4.59737 4.70417 4.77915 4.86077 4.86238 4.95633 5.02963 5.12205 5.16970 5.26978 5.38892 5.42376 5.46295 5.47943 5.79609 5.97792 6.04367 6.52342 6.69478 7.08931 7.34297 7.44516 8.84188 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.005500 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.403577 B = 5089.332605 C = 5510.702931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.367 6.367 3 C 0.087 3.913 4 H 0.095 0.905 5 C 0.499 3.501 6 O -0.580 6.580 7 N -0.607 5.607 8 C 0.113 3.887 9 C -0.129 4.129 10 C 0.232 3.768 11 O -0.594 6.594 12 C -0.552 4.552 13 H 0.070 0.930 14 C 0.031 3.969 15 N -0.916 5.916 16 Si 0.962 3.038 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.119 3.881 21 C -0.092 4.092 22 C -0.136 4.136 23 C -0.136 4.136 24 H 0.109 0.891 25 H 0.064 0.936 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.381 0.619 32 H 0.270 0.730 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.598 -9.455 7.398 12.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.284 6.284 3 C 0.026 3.974 4 H 0.113 0.887 5 C 0.289 3.711 6 O -0.461 6.461 7 N -0.341 5.341 8 C -0.010 4.010 9 C -0.168 4.168 10 C 0.192 3.808 11 O -0.404 6.404 12 C -0.590 4.590 13 H 0.089 0.911 14 C -0.169 4.169 15 N -0.556 5.556 16 Si 0.788 3.212 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.002 4.002 21 C -0.111 4.111 22 C -0.194 4.194 23 C -0.194 4.194 24 H 0.127 0.873 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.232 0.768 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.479 -10.564 7.143 12.761 hybrid contribution 0.070 1.807 -0.749 1.957 sum 0.548 -8.757 6.394 10.857 Atomic orbital electron populations 1.23026 0.79814 1.04303 1.00120 1.87918 1.21072 1.25135 1.94251 1.22133 0.98555 0.86548 0.90165 0.88742 1.21670 0.76173 0.80020 0.93275 1.90619 1.53616 1.53829 1.48028 1.48714 1.65671 1.10718 1.08978 1.21907 0.99793 0.94617 0.84661 1.23046 1.00765 0.91961 1.01011 1.19824 0.79977 0.90564 0.90429 1.86053 1.27111 1.44349 1.82902 1.21767 1.25065 0.93767 1.18401 0.91150 1.25674 0.95995 1.00650 0.94589 1.69658 1.38638 1.21262 1.26061 0.85444 0.78501 0.78754 0.78519 1.18866 1.20890 1.20921 1.22510 1.00518 0.86242 0.90971 1.21351 0.91642 1.01162 0.96945 1.21751 1.03030 1.02324 0.92247 1.21674 0.99789 0.98891 0.99009 0.87296 0.91794 0.95895 0.92038 0.93582 0.91659 0.91472 0.76770 0.92020 0.90275 0.89065 0.89222 0.91844 0.90552 0.91842 0.90402 0.92076 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.81 113.37 1.23 1.79 16 2 O -0.37 -10.97 8.55 -130.08 -1.11 -12.08 16 3 C 0.09 2.65 1.52 29.85 0.05 2.69 16 4 H 0.09 2.66 7.21 -2.39 -0.02 2.64 16 5 C 0.50 19.25 6.17 87.66 0.54 19.79 16 6 O -0.58 -26.24 16.85 15.86 0.27 -25.97 16 7 N -0.61 -23.76 3.33 -811.77 -2.70 -26.46 16 8 C 0.11 4.60 6.88 86.73 0.60 5.20 16 9 C -0.13 -5.62 5.64 31.79 0.18 -5.44 16 10 C 0.23 10.57 0.89 -10.15 -0.01 10.56 16 11 O -0.59 -29.26 13.18 -148.98 -1.96 -31.22 16 12 C -0.55 -26.57 8.25 25.60 0.21 -26.36 16 13 H 0.07 3.26 7.77 -2.91 -0.02 3.24 16 14 C 0.03 1.52 5.30 84.65 0.45 1.97 16 15 N -0.92 -46.05 10.79 21.45 0.23 -45.82 16 16 Si 0.96 39.03 29.54 68.60 2.03 41.06 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 19 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 20 C 0.12 4.55 4.53 86.85 0.39 4.95 16 21 C -0.09 -2.33 2.66 -10.80 -0.03 -2.36 16 22 C -0.14 -2.62 9.09 71.98 0.65 -1.97 16 23 C -0.14 -3.54 8.81 71.98 0.63 -2.91 16 24 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.06 1.25 8.09 -2.38 -0.02 1.23 16 26 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.06 3.05 7.85 -2.38 -0.02 3.03 16 30 H 0.07 2.89 8.03 -2.38 -0.02 2.87 16 31 H 0.38 19.47 6.93 -74.06 -0.51 18.96 16 32 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 33 H 0.08 2.83 7.22 -2.39 -0.02 2.81 16 34 H 0.09 3.19 7.19 -2.39 -0.02 3.17 16 35 H 0.09 2.30 5.68 -2.39 -0.01 2.29 16 36 H 0.06 1.22 7.84 -2.38 -0.02 1.20 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.62 7.55 -2.39 -0.02 1.60 16 41 H 0.03 0.82 7.40 -2.39 -0.02 0.80 16 Total: -1.00 -58.97 328.16 2.14 -56.83 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.50 Total: 35.77 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 4.89 Total: 7.91 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -2.47 Total: -72.29 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -2.81 Total: -69.27 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -58.97 2.14 -56.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.414 kcal (2) G-P(sol) polarization free energy of solvation -58.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds