Wall clock time and date at job start Mon Mar 30 2020 01:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99370 * 2 1 4 4 H 1.08998 * 109.47349 * 13.23138 * 3 2 1 5 5 C 1.50703 * 109.46688 * 133.22826 * 3 2 1 6 6 O 1.21272 * 120.00237 * 11.50523 * 5 3 2 7 7 N 1.34776 * 119.99746 * 191.50480 * 5 3 2 8 8 C 1.47420 * 125.65104 * 5.66622 * 7 5 3 9 9 C 1.54916 * 104.93028 * 204.15747 * 8 7 5 10 10 C 1.55155 * 101.57677 * 322.93205 * 9 8 7 11 11 O 1.42896 * 110.72217 * 277.13785 * 10 9 8 12 12 C 1.50700 * 110.71820 * 154.04557 * 10 9 8 13 13 H 1.07996 * 120.00207 * 237.37511 * 12 10 9 14 14 C 1.37882 * 120.00093 * 57.37135 * 12 10 9 15 15 N 1.31515 * 119.99772 * 5.61495 * 14 12 10 16 16 Si 1.86799 * 119.99904 * 185.61342 * 14 12 10 17 17 H 1.48498 * 109.47065 * 94.99664 * 16 14 12 18 18 H 1.48500 * 109.47077 * 214.99052 * 16 14 12 19 19 H 1.48492 * 109.47399 * 334.99473 * 16 14 12 20 20 C 1.47288 * 125.79170 * 185.66644 * 7 5 3 21 21 C 1.52993 * 109.47296 * 253.22446 * 3 2 1 22 22 C 1.52998 * 109.47606 * 298.34094 * 21 3 2 23 23 C 1.53007 * 109.46942 * 58.34021 * 21 3 2 24 24 H 1.08999 * 109.47378 * 305.09831 * 1 2 3 25 25 H 1.08999 * 109.47544 * 65.10324 * 1 2 3 26 26 H 1.09004 * 109.46845 * 185.10259 * 1 2 3 27 27 H 1.09001 * 110.37193 * 85.26109 * 8 7 5 28 28 H 1.09006 * 110.36581 * 323.04686 * 8 7 5 29 29 H 1.08998 * 111.00340 * 81.00804 * 9 8 7 30 30 H 1.09005 * 111.00080 * 204.85917 * 9 8 7 31 31 H 0.96700 * 114.00020 * 298.55178 * 11 10 9 32 32 H 0.97002 * 119.99925 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.85914 * 59.49961 * 20 7 5 34 34 H 1.09003 * 110.00461 * 298.42616 * 20 7 5 35 35 H 1.09001 * 109.47227 * 178.33835 * 21 3 2 36 36 H 1.08998 * 109.46969 * 63.74288 * 22 21 3 37 37 H 1.08992 * 109.47716 * 183.74722 * 22 21 3 38 38 H 1.09000 * 109.47027 * 303.74610 * 22 21 3 39 39 H 1.08996 * 109.46694 * 299.72439 * 23 21 3 40 40 H 1.09000 * 109.47300 * 59.72862 * 23 21 3 41 41 H 1.09000 * 109.46820 * 179.72878 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.2439 2.0443 0.2352 5 6 3.1034 1.3687 1.0353 6 8 3.5028 0.3500 1.5583 7 7 3.6372 2.5572 1.3799 8 6 3.1704 3.8760 0.9151 9 6 4.4021 4.8059 1.0502 10 6 5.0508 4.2755 2.3560 11 8 4.4176 4.8457 3.5030 12 6 6.5307 4.5601 2.3698 13 1 7.2356 3.7490 2.4775 14 6 6.9847 5.8560 2.2449 15 7 6.1281 6.8537 2.2247 16 14 8.8164 6.1944 2.1042 17 1 9.1916 6.3005 0.6713 18 1 9.1389 7.4683 2.7959 19 1 9.5748 5.0836 2.7336 20 6 4.7836 2.7573 2.2829 21 6 2.5978 1.6022 -1.3810 22 6 3.7019 0.5903 -1.6936 23 6 1.4959 1.4974 -2.4374 24 1 -0.3634 0.5909 0.8408 25 1 -0.3634 0.4326 -0.9321 26 1 -0.3633 -1.0236 0.0914 27 1 2.3547 4.2331 1.5439 28 1 2.8498 3.8199 -0.1252 29 1 5.0765 4.6865 0.2023 30 1 4.0959 5.8462 1.1606 31 1 4.4900 5.8086 3.5543 32 1 6.4475 7.7654 2.1365 33 1 5.6605 2.2451 1.8870 34 1 4.5475 2.3743 3.2757 35 1 3.0148 2.6093 -1.3898 36 1 3.2725 -0.4099 -1.7506 37 1 4.1656 0.8414 -2.6475 38 1 4.4542 0.6183 -0.9054 39 1 1.0823 0.4890 -2.4320 40 1 0.7070 2.2150 -2.2121 41 1 1.9137 1.7134 -3.4208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:14 Heat of formation + Delta-G solvation = -155.109176 kcal Electronic energy + Delta-G solvation = -22502.689261 eV Core-core repulsion = 19188.803491 eV Total energy + Delta-G solvation = -3313.885770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48780 -39.59356 -38.37463 -36.22982 -35.46810 -34.23961 -31.60014 -30.26898 -29.16809 -28.07135 -27.28691 -26.14725 -24.02211 -21.85129 -21.43489 -20.42704 -19.10910 -18.29677 -17.74301 -17.19079 -16.91003 -16.46551 -16.28471 -16.07591 -15.55285 -14.95001 -14.76565 -14.66086 -14.26779 -13.89604 -13.75541 -13.52361 -13.26009 -13.20723 -13.16835 -12.92625 -12.66431 -12.53316 -12.42912 -12.28112 -12.22533 -12.04808 -11.99616 -11.59886 -11.27381 -11.08261 -10.62209 -10.35640 -10.14223 -9.66100 -8.25475 -6.39165 1.40973 1.44834 1.52211 1.53483 1.78594 2.39549 2.91914 3.00501 3.43451 3.67670 3.78344 3.86864 3.94789 4.13263 4.24183 4.31012 4.37910 4.47795 4.55234 4.57286 4.57908 4.74622 4.81141 4.84451 4.90462 4.92206 5.00661 5.13006 5.17241 5.21242 5.34475 5.42795 5.47019 5.52781 5.75770 6.05940 6.10687 6.55775 6.64727 7.10582 7.30022 7.41457 8.80731 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029160 B = 0.005026 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.980138 B = 5570.178886 C = 5741.942660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.381 6.381 3 C 0.090 3.910 4 H 0.109 0.891 5 C 0.513 3.487 6 O -0.582 6.582 7 N -0.609 5.609 8 C 0.097 3.903 9 C -0.122 4.122 10 C 0.236 3.764 11 O -0.594 6.594 12 C -0.566 4.566 13 H 0.047 0.953 14 C 0.043 3.957 15 N -0.901 5.901 16 Si 0.956 3.044 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.280 1.280 20 C 0.130 3.870 21 C -0.106 4.106 22 C -0.140 4.140 23 C -0.139 4.139 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.380 0.620 32 H 0.272 0.728 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 -3.925 -10.546 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.299 6.299 3 C 0.029 3.971 4 H 0.127 0.873 5 C 0.302 3.698 6 O -0.462 6.462 7 N -0.344 5.344 8 C -0.024 4.024 9 C -0.161 4.161 10 C 0.196 3.804 11 O -0.403 6.403 12 C -0.604 4.604 13 H 0.066 0.934 14 C -0.159 4.159 15 N -0.540 5.540 16 Si 0.782 3.218 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.205 1.205 20 C 0.007 3.993 21 C -0.124 4.124 22 C -0.197 4.197 23 C -0.196 4.196 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.666 -5.153 -10.189 16.324 hybrid contribution 1.352 0.931 0.449 1.701 sum -10.314 -4.222 -9.741 14.802 Atomic orbital electron populations 1.23228 0.78913 1.04173 1.01545 1.87986 1.21702 1.25485 1.94722 1.22034 0.94019 0.87459 0.93576 0.87345 1.21166 0.84097 0.81436 0.83094 1.90634 1.63898 1.35203 1.56416 1.48724 1.32393 1.06651 1.46587 1.22697 0.97858 0.81258 1.00630 1.23049 0.95134 0.99156 0.98758 1.19594 0.90477 0.86731 0.83591 1.86129 1.79596 1.26687 1.47878 1.21682 0.92293 0.93595 1.52799 0.93428 1.25519 1.01895 0.95533 0.92992 1.69761 1.35443 0.99672 1.49107 0.85580 0.80378 0.77464 0.78401 1.19720 1.20340 1.20473 1.21815 0.87746 0.97483 0.92240 1.21585 0.97760 1.00422 0.92669 1.21709 0.97421 0.99639 1.00926 1.21818 0.97245 1.02806 0.97704 0.93569 0.91167 0.88348 0.90775 0.87880 0.92213 0.89832 0.77023 0.91812 0.92494 0.94272 0.89100 0.92327 0.90765 0.96105 0.91916 0.90810 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.37 113.37 1.18 1.49 16 2 O -0.38 -10.82 8.82 -130.20 -1.15 -11.97 16 3 C 0.09 2.50 1.71 29.85 0.05 2.55 16 4 H 0.11 2.39 7.34 -2.39 -0.02 2.37 16 5 C 0.51 19.88 5.76 87.66 0.50 20.38 16 6 O -0.58 -27.80 16.85 15.78 0.27 -27.53 16 7 N -0.61 -24.03 3.33 -811.11 -2.70 -26.74 16 8 C 0.10 3.21 6.47 86.86 0.56 3.78 16 9 C -0.12 -5.03 5.39 31.99 0.17 -4.86 16 10 C 0.24 11.40 0.85 -10.35 -0.01 11.39 16 11 O -0.59 -29.83 13.08 -148.98 -1.95 -31.78 16 12 C -0.57 -29.92 8.22 25.60 0.21 -29.71 16 13 H 0.05 2.60 7.63 -2.91 -0.02 2.58 16 14 C 0.04 2.16 5.24 84.66 0.44 2.60 16 15 N -0.90 -44.83 10.70 21.45 0.23 -44.60 16 16 Si 0.96 40.91 29.54 68.60 2.03 42.94 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.13 6.11 6.25 86.68 0.54 6.65 16 21 C -0.11 -2.44 2.67 -10.79 -0.03 -2.47 16 22 C -0.14 -3.78 8.82 71.98 0.63 -3.15 16 23 C -0.14 -2.17 8.22 71.98 0.59 -1.58 16 24 H 0.05 0.80 8.04 -2.39 -0.02 0.78 16 25 H 0.07 0.91 6.64 -2.39 -0.02 0.89 16 26 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.10 2.60 5.46 -2.38 -0.01 2.59 16 29 H 0.06 2.53 8.04 -2.39 -0.02 2.51 16 30 H 0.08 3.53 7.49 -2.38 -0.02 3.51 16 31 H 0.38 18.85 7.60 -74.06 -0.56 18.28 16 32 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 33 H 0.06 2.79 7.70 -2.39 -0.02 2.77 16 34 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 35 H 0.09 2.04 5.92 -2.39 -0.01 2.03 16 36 H 0.06 1.61 7.84 -2.39 -0.02 1.59 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.02 0.69 7.01 -2.39 -0.02 0.68 16 39 H 0.06 1.00 6.71 -2.39 -0.02 0.99 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -64.70 324.11 2.03 -62.67 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.46 Total: 29.93 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 4.85 Total: 7.08 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -2.48 Total: -71.33 kcal Atomic # 8 Polarization: -68.45 SS G_CDS: -2.83 Total: -71.28 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -64.70 2.03 -62.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.444 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds