Wall clock time and date at job start Mon Mar 30 2020 01:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47625 * 2 1 4 4 C 1.53003 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47445 * 54.64659 * 4 3 2 6 6 O 1.42906 * 109.46706 * 294.64682 * 4 3 2 7 7 C 1.42900 * 113.99737 * 150.00094 * 6 4 3 8 8 C 1.50698 * 109.47068 * 174.65076 * 4 3 2 9 9 O 1.21276 * 119.99949 * 106.19209 * 8 4 3 10 10 N 1.34779 * 119.99901 * 286.19230 * 8 4 3 11 11 C 1.47020 * 125.64555 * 4.50301 * 10 8 4 12 12 C 1.54341 * 107.26309 * 178.85252 * 11 10 8 13 13 C 1.55153 * 103.01997 * 338.14149 * 12 11 10 14 14 O 1.42909 * 111.00501 * 277.23470 * 13 12 11 15 15 C 1.50694 * 111.03854 * 153.39537 * 13 12 11 16 16 H 1.07996 * 120.00288 * 247.78668 * 15 13 12 17 17 C 1.37885 * 119.99832 * 67.78579 * 15 13 12 18 18 N 1.31513 * 120.00085 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99868 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47040 * 89.99893 * 19 17 15 21 21 H 1.48502 * 109.46888 * 209.99774 * 19 17 15 22 22 H 1.48506 * 109.47058 * 329.99821 * 19 17 15 23 23 C 1.47418 * 125.65077 * 184.81742 * 10 8 4 24 24 H 1.09005 * 109.46735 * 60.00370 * 1 2 3 25 25 H 1.08999 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47163 * 300.00406 * 1 2 3 27 27 H 1.09004 * 109.47338 * 239.99399 * 2 1 3 28 28 H 1.09007 * 109.47045 * 120.00073 * 2 1 3 29 29 H 1.09005 * 109.46762 * 299.99614 * 3 2 1 30 30 H 1.08995 * 109.47181 * 59.99605 * 3 2 1 31 31 H 1.09007 * 109.47157 * 299.99681 * 7 6 4 32 32 H 1.08996 * 109.47035 * 60.00309 * 7 6 4 33 33 H 1.09003 * 109.47047 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.88780 * 298.39317 * 11 10 8 35 35 H 1.09001 * 109.87919 * 59.56599 * 11 10 8 36 36 H 1.09005 * 110.84495 * 219.67699 * 12 11 10 37 37 H 1.08996 * 110.51470 * 96.45505 * 12 11 10 38 38 H 0.96698 * 113.99723 * 292.19449 * 14 13 12 39 39 H 0.96999 * 119.99777 * 180.02562 * 18 17 15 40 40 H 1.09008 * 110.36319 * 322.92667 * 23 10 8 41 41 H 1.08998 * 110.37158 * 85.13601 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8479 -0.8390 6 8 4.0469 0.8803 1.2237 7 6 5.3064 0.2156 1.1064 8 6 4.0724 2.8570 -0.1331 9 8 4.5511 3.4229 0.8268 10 7 3.9897 3.4933 -1.3184 11 6 3.3516 2.9637 -2.5324 12 6 3.4745 4.0475 -3.6244 13 6 3.6828 5.3480 -2.8043 14 8 2.4333 5.8751 -2.3536 15 6 4.4425 6.3754 -3.6032 16 1 5.4436 6.6552 -3.3100 17 6 3.8595 6.9583 -4.7084 18 7 2.6403 6.6180 -5.0652 19 14 4.8016 8.2313 -5.6991 20 1 5.5719 7.5527 -6.7720 21 1 3.8458 9.1914 -6.3074 22 1 5.7358 8.9619 -4.8052 23 6 4.5298 4.8327 -1.6141 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 5.2210 -0.6010 0.3894 32 1 6.0603 0.9238 0.7626 33 1 5.5989 -0.1826 2.0780 34 1 3.8597 2.0538 -2.8516 35 1 2.2998 2.7545 -2.3371 36 1 2.5611 4.1069 -4.2164 37 1 4.3365 3.8513 -4.2619 38 1 1.8686 6.2097 -3.0637 39 1 2.2304 7.0278 -5.8429 40 1 4.4106 5.4886 -0.7516 41 1 5.5806 4.7645 -1.8954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:17 Heat of formation + Delta-G solvation = -141.444045 kcal Electronic energy + Delta-G solvation = -22163.599099 eV Core-core repulsion = 18850.305894 eV Total energy + Delta-G solvation = -3313.293205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91373 -37.99263 -36.68548 -34.89263 -34.20492 -32.17159 -30.54428 -29.37313 -28.22873 -26.37477 -25.49496 -24.02013 -22.16130 -21.14002 -19.82945 -18.94003 -17.40498 -16.97120 -16.56962 -15.58298 -15.09952 -15.02211 -14.91063 -14.60437 -14.32158 -13.77785 -13.50942 -13.32178 -13.02968 -12.45947 -12.36398 -12.13956 -11.89915 -11.78670 -11.47381 -11.38842 -11.31353 -11.11293 -10.99400 -10.85435 -10.71422 -10.52521 -10.50089 -10.32913 -10.06343 -9.45876 -8.94459 -8.70589 -8.24451 -8.00148 -6.33596 -4.41318 2.99770 3.16839 3.24852 3.28249 3.36458 3.89038 4.23311 4.68971 4.89387 4.91045 4.95737 5.07262 5.16662 5.31754 5.40168 5.48344 5.56734 5.60318 5.67415 5.71230 5.77561 5.81116 5.86974 5.95931 6.10427 6.17888 6.22472 6.35853 6.41166 6.62717 6.83038 6.90270 7.09459 7.25630 7.28568 7.69947 7.95609 8.10615 8.59522 8.64434 9.27918 9.45064 10.74148 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.004848 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.831366 B = 5774.293886 C = 6376.197668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.081 3.919 5 H 0.080 0.920 6 O -0.358 6.358 7 C 0.030 3.970 8 C 0.499 3.501 9 O -0.539 6.539 10 N -0.605 5.605 11 C 0.096 3.904 12 C -0.139 4.139 13 C 0.250 3.750 14 O -0.584 6.584 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.118 3.882 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.385 0.615 39 H 0.270 0.730 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -13.223 3.701 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.154 4.154 4 C 0.019 3.981 5 H 0.098 0.902 6 O -0.275 6.275 7 C -0.067 4.067 8 C 0.286 3.714 9 O -0.417 6.417 10 N -0.340 5.340 11 C -0.027 4.027 12 C -0.178 4.178 13 C 0.209 3.791 14 O -0.394 6.394 15 C -0.574 4.574 16 H 0.084 0.916 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.004 4.004 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.237 0.763 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.858 -13.093 4.923 14.014 hybrid contribution 0.475 0.777 -1.547 1.795 sum -0.383 -12.315 3.376 12.775 Atomic orbital electron populations 1.21765 0.95623 1.01454 1.02117 1.21470 0.95948 0.95942 1.02270 1.21737 0.90993 0.98413 1.04228 1.22055 0.96223 0.91403 0.88385 0.90211 1.87968 1.36419 1.72451 1.30682 1.22823 0.85840 0.95625 1.02401 1.20894 0.79856 0.88787 0.81884 1.90664 1.46204 1.67693 1.37121 1.48666 1.55974 1.19160 1.10194 1.22272 0.96651 0.97706 0.86052 1.23217 1.02885 0.95443 0.96255 1.19560 0.82602 0.89479 0.87451 1.86110 1.31232 1.82333 1.39707 1.21489 1.01745 1.23282 1.10910 0.91642 1.24988 0.95022 0.96306 0.96640 1.69557 1.13680 1.43317 1.27224 0.86394 0.79625 0.80945 0.79903 1.20448 1.20971 1.19652 1.22394 0.96925 0.81694 0.99353 0.92538 0.92821 0.92632 0.92167 0.91277 0.89468 0.90395 0.94123 0.93885 0.89446 0.92961 0.92002 0.89775 0.91375 0.76256 0.92042 0.91050 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.27 5.83 -26.73 -0.16 -1.42 16 3 C -0.12 -1.56 4.84 -26.73 -0.13 -1.69 16 4 C 0.08 1.22 1.91 -27.88 -0.05 1.17 16 5 H 0.08 1.03 7.49 -51.93 -0.39 0.64 16 6 O -0.36 -5.52 9.47 -54.75 -0.52 -6.04 16 7 C 0.03 0.36 10.81 101.05 1.09 1.45 16 8 C 0.50 9.78 7.11 -10.99 -0.08 9.70 16 9 O -0.54 -12.61 16.79 -13.96 -0.23 -12.85 16 10 N -0.61 -12.01 3.33 -170.52 -0.57 -12.58 16 11 C 0.10 1.68 6.12 -3.06 -0.02 1.66 16 12 C -0.14 -2.89 5.64 -24.89 -0.14 -3.04 16 13 C 0.25 5.96 0.89 -89.63 -0.08 5.88 16 14 O -0.58 -14.89 13.18 -35.23 -0.46 -15.35 16 15 C -0.54 -13.76 8.25 -34.44 -0.28 -14.04 16 16 H 0.07 1.67 7.77 -52.49 -0.41 1.27 16 17 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 18 N -0.90 -22.71 10.79 55.43 0.60 -22.12 16 19 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.12 2.65 6.10 -2.53 -0.02 2.63 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 29 H 0.09 1.19 5.64 -51.93 -0.29 0.90 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.39 8.09 -51.92 -0.42 -0.03 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.77 7.99 -51.93 -0.41 0.35 16 35 H 0.06 1.01 6.02 -51.93 -0.31 0.70 16 36 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 37 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 38 H 0.39 9.88 6.93 45.56 0.32 10.19 16 39 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.07 1.73 7.99 -51.92 -0.42 1.32 16 41 H 0.07 1.51 8.02 -51.93 -0.42 1.10 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -29.28 332.07 -6.87 -36.15 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.08 Total: 9.98 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 0.41 Total: 2.95 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.03 Total: -34.70 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.22 Total: -34.24 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.28 -6.87 -36.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.295 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds