Wall clock time and date at job start Mon Mar 30 2020 01:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47126 * 2 1 4 4 C 1.52998 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47042 * 55.88943 * 4 3 2 6 6 O 1.42893 * 109.47260 * 295.89308 * 4 3 2 7 7 C 1.42907 * 114.00403 * 149.99713 * 6 4 3 8 8 C 1.50700 * 109.47572 * 175.88985 * 4 3 2 9 9 O 1.21275 * 120.00325 * 106.60046 * 8 4 3 10 10 N 1.34776 * 119.99582 * 286.60909 * 8 4 3 11 11 C 1.47019 * 125.65502 * 5.03180 * 10 8 4 12 12 C 1.54365 * 107.29228 * 181.13080 * 11 10 8 13 13 C 1.55161 * 102.91928 * 22.13918 * 12 11 10 14 14 O 1.42904 * 111.00191 * 82.64072 * 13 12 11 15 15 C 1.50698 * 111.00464 * 206.45002 * 13 12 11 16 16 H 1.08000 * 119.99606 * 120.49276 * 15 13 12 17 17 C 1.37876 * 120.00200 * 300.21755 * 15 13 12 18 18 N 1.31513 * 120.00096 * 354.62254 * 17 15 13 19 19 Si 1.86799 * 119.99937 * 174.61818 * 17 15 13 20 20 H 1.48503 * 109.47177 * 94.97455 * 19 17 15 21 21 H 1.48496 * 109.47270 * 214.97642 * 19 17 15 22 22 H 1.48498 * 109.47205 * 334.97689 * 19 17 15 23 23 C 1.47436 * 125.64286 * 185.08103 * 10 8 4 24 24 H 1.09000 * 109.47540 * 299.99860 * 1 2 3 25 25 H 1.08999 * 109.47035 * 60.00242 * 1 2 3 26 26 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47666 * 239.99602 * 2 1 3 28 28 H 1.08999 * 109.47035 * 119.99758 * 2 1 3 29 29 H 1.08994 * 109.47477 * 59.99671 * 3 2 1 30 30 H 1.08999 * 109.46966 * 299.99800 * 3 2 1 31 31 H 1.09005 * 109.46846 * 59.99857 * 7 6 4 32 32 H 1.08999 * 109.47084 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.46905 * 300.00293 * 7 6 4 34 34 H 1.08997 * 109.88359 * 300.52086 * 11 10 8 35 35 H 1.09001 * 109.87917 * 61.68070 * 11 10 8 36 36 H 1.09005 * 110.70748 * 263.79869 * 12 11 10 37 37 H 1.08999 * 110.75711 * 140.50801 * 12 11 10 38 38 H 0.96703 * 113.99837 * 58.17545 * 14 13 12 39 39 H 0.96998 * 119.99743 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.36860 * 36.99184 * 23 10 8 41 41 H 1.09002 * 110.36434 * 274.66935 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8661 -0.8500 6 8 4.0458 0.8544 1.2129 7 6 5.3055 0.1924 1.0825 8 6 4.0724 2.8597 -0.1012 9 8 4.5570 3.4025 0.8690 10 7 3.9829 3.5239 -1.2705 11 6 3.3277 3.0282 -2.4897 12 6 3.4991 4.1118 -3.5757 13 6 4.7289 4.9140 -3.0742 14 8 5.9482 4.2703 -3.4501 15 6 4.6919 6.3326 -3.5813 16 1 4.6732 7.1556 -2.8822 17 6 4.6875 6.5800 -4.9377 18 7 4.8223 5.5858 -5.7879 19 14 4.4901 8.3274 -5.5677 20 1 5.8295 8.9158 -5.8232 21 1 3.7069 8.3133 -6.8293 22 1 3.7771 9.1424 -4.5516 23 6 4.5269 4.8676 -1.5391 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 6.0597 0.9079 0.7544 32 1 5.5973 -0.2265 2.0455 33 1 5.2207 -0.6085 0.3481 34 1 3.8005 2.1012 -2.8140 35 1 2.2680 2.8590 -2.2984 36 1 2.6168 4.7500 -3.6259 37 1 3.7039 3.6580 -4.5453 38 1 6.0485 4.1440 -4.4036 39 1 4.8189 5.7598 -6.7421 40 1 5.4798 5.0005 -1.0268 41 1 3.8172 5.6336 -1.2265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592852550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:19 Heat of formation + Delta-G solvation = -161.123780 kcal Electronic energy + Delta-G solvation = -22143.090043 eV Core-core repulsion = 18828.943461 eV Total energy + Delta-G solvation = -3314.146583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40607 -39.49437 -38.20876 -36.24278 -35.53899 -34.22983 -31.96297 -30.74084 -29.86214 -27.46819 -27.04320 -25.40122 -23.61547 -22.07069 -21.64271 -20.47910 -19.09520 -18.52367 -17.83231 -16.98372 -16.88199 -16.47297 -16.16262 -16.14757 -15.66850 -15.27034 -14.80212 -14.69328 -14.23167 -14.12600 -13.73221 -13.60232 -13.31311 -13.16830 -13.04125 -13.00409 -12.64813 -12.52475 -12.32259 -12.24348 -12.02234 -11.97192 -11.86583 -11.54222 -11.43753 -11.30977 -10.63654 -10.34687 -10.14960 -9.62349 -8.25116 -6.38561 1.41559 1.45411 1.49025 1.54612 1.90029 2.40239 2.75184 3.00601 3.40033 3.76136 3.83776 3.86110 3.98968 4.15869 4.24401 4.33827 4.35703 4.45713 4.48062 4.56443 4.59594 4.71408 4.76763 4.79223 4.85565 4.95621 5.04923 5.14819 5.22962 5.27749 5.36900 5.44545 5.51198 5.52121 5.76285 5.96856 6.09955 6.56252 6.64836 7.08035 7.30772 7.42013 8.81526 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026786 B = 0.004781 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.053773 B = 5854.918240 C = 6314.863101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.111 4.111 4 C 0.088 3.912 5 H 0.105 0.895 6 O -0.375 6.375 7 C 0.023 3.977 8 C 0.492 3.508 9 O -0.587 6.587 10 N -0.607 5.607 11 C 0.101 3.899 12 C -0.127 4.127 13 C 0.236 3.764 14 O -0.594 6.594 15 C -0.565 4.565 16 H 0.051 0.949 17 C 0.042 3.958 18 N -0.903 5.903 19 Si 0.957 3.043 20 H -0.281 1.281 21 H -0.275 1.275 22 H -0.273 1.273 23 C 0.124 3.876 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.021 0.979 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.378 0.622 39 H 0.272 0.728 40 H 0.041 0.959 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 -12.830 4.456 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.149 4.149 4 C 0.027 3.973 5 H 0.123 0.877 6 O -0.292 6.292 7 C -0.073 4.073 8 C 0.281 3.719 9 O -0.467 6.467 10 N -0.340 5.340 11 C -0.021 4.021 12 C -0.166 4.166 13 C 0.196 3.804 14 O -0.402 6.402 15 C -0.603 4.603 16 H 0.069 0.931 17 C -0.160 4.160 18 N -0.542 5.542 19 Si 0.783 3.217 20 H -0.207 1.207 21 H -0.200 1.200 22 H -0.198 1.198 23 C 0.001 3.999 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.229 -12.653 5.682 15.641 hybrid contribution 0.527 1.415 -1.173 1.912 sum -6.702 -11.237 4.509 13.839 Atomic orbital electron populations 1.21761 0.94653 1.02423 1.02002 1.21434 0.96647 0.94011 1.02988 1.21761 0.89165 1.00354 1.03599 1.22148 0.97478 0.88063 0.89650 0.87741 1.87937 1.37575 1.71736 1.31974 1.23037 0.84105 0.95748 1.04365 1.21912 0.78800 0.90150 0.81012 1.90631 1.48001 1.70528 1.37573 1.48758 1.55350 1.18041 1.11889 1.22396 0.97820 0.98174 0.83695 1.22987 0.99490 0.96459 0.97665 1.19776 0.82163 0.90469 0.88021 1.86139 1.42584 1.82212 1.29311 1.21651 1.53322 0.92664 0.92629 0.93064 1.25539 0.92996 1.00942 0.96570 1.69749 1.49019 1.32413 1.03032 0.85567 0.78033 0.80238 0.77906 1.20746 1.19979 1.19764 1.22155 0.97044 0.83921 0.96798 0.93118 0.92180 0.91467 0.90574 0.91601 0.91892 0.88890 0.96043 0.87511 0.91195 0.90381 0.88821 0.91655 0.90247 0.77221 0.91887 0.94042 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.11 -1.94 5.82 30.59 0.18 -1.76 16 3 C -0.11 -2.53 4.84 30.59 0.15 -2.38 16 4 C 0.09 2.48 1.92 29.85 0.06 2.54 16 5 H 0.11 2.47 7.44 -2.38 -0.02 2.46 16 6 O -0.37 -11.08 9.42 -130.29 -1.23 -12.30 16 7 C 0.02 0.55 10.81 113.37 1.23 1.78 16 8 C 0.49 19.01 7.11 87.66 0.62 19.64 16 9 O -0.59 -27.88 16.85 15.67 0.26 -27.62 16 10 N -0.61 -23.58 3.33 -811.70 -2.70 -26.28 16 11 C 0.10 3.25 6.07 86.74 0.53 3.78 16 12 C -0.13 -5.14 5.38 31.80 0.17 -4.97 16 13 C 0.24 11.28 0.86 -10.15 -0.01 11.27 16 14 O -0.59 -30.04 13.16 -148.98 -1.96 -32.00 16 15 C -0.56 -29.51 8.27 25.60 0.21 -29.30 16 16 H 0.05 2.73 7.80 -2.91 -0.02 2.71 16 17 C 0.04 2.08 5.27 84.65 0.45 2.53 16 18 N -0.90 -45.06 10.84 21.45 0.23 -44.82 16 19 Si 0.96 40.59 29.54 68.60 2.03 42.62 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C 0.12 5.68 6.07 86.85 0.53 6.21 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.21 7.80 -2.39 -0.02 1.19 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.94 5.62 -2.39 -0.01 1.93 16 31 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.23 8.08 -2.39 -0.02 1.22 16 34 H 0.08 2.24 7.91 -2.39 -0.02 2.22 16 35 H 0.09 2.39 6.10 -2.39 -0.01 2.38 16 36 H 0.06 2.66 8.03 -2.38 -0.02 2.64 16 37 H 0.08 3.31 7.60 -2.39 -0.02 3.29 16 38 H 0.38 18.89 7.56 -74.05 -0.56 18.33 16 39 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 40 H 0.04 2.08 8.09 -2.39 -0.02 2.07 16 41 H 0.07 3.18 8.03 -2.39 -0.02 3.16 16 Total: -1.00 -63.78 332.17 1.91 -61.87 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.45 Total: 30.72 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.82 Total: 7.82 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -2.47 Total: -71.10 kcal Atomic # 8 Polarization: -69.00 SS G_CDS: -2.92 Total: -71.92 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -63.78 1.91 -61.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.255 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds