Wall clock time and date at job start Mon Mar 30 2020 01:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 C 1.53002 * 109.47043 * 177.94624 * 3 2 1 5 5 H 1.09000 * 109.46877 * 305.51178 * 4 3 2 6 6 O 1.42902 * 109.46969 * 65.50646 * 4 3 2 7 7 C 1.42899 * 114.00305 * 259.02991 * 6 4 3 8 8 C 1.50699 * 109.47247 * 185.50491 * 4 3 2 9 9 O 1.21276 * 120.00118 * 250.46928 * 8 4 3 10 10 N 1.34784 * 119.99626 * 70.47344 * 8 4 3 11 11 C 1.47022 * 125.64579 * 5.20564 * 10 8 4 12 12 C 1.54324 * 107.26670 * 181.02710 * 11 10 8 13 13 C 1.55153 * 102.94371 * 22.18846 * 12 11 10 14 14 O 1.42907 * 111.00154 * 82.57878 * 13 12 11 15 15 C 1.50705 * 111.00543 * 206.38165 * 13 12 11 16 16 H 1.08003 * 119.99475 * 118.54541 * 15 13 12 17 17 C 1.37872 * 120.00226 * 298.55617 * 15 13 12 18 18 N 1.31514 * 120.00520 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99732 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47321 * 119.99761 * 19 17 15 22 22 H 1.48496 * 109.46796 * 239.99526 * 19 17 15 23 23 C 1.47418 * 125.64464 * 184.89964 * 10 8 4 24 24 H 1.09004 * 109.47019 * 299.99562 * 1 2 3 25 25 H 1.09006 * 109.47759 * 59.99849 * 1 2 3 26 26 H 1.09004 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47019 * 240.00438 * 2 1 3 28 28 H 1.08996 * 109.47378 * 119.99799 * 2 1 3 29 29 H 1.08995 * 109.47599 * 57.94829 * 3 2 1 30 30 H 1.09002 * 109.47386 * 297.94332 * 3 2 1 31 31 H 1.09001 * 109.46967 * 173.74800 * 7 6 4 32 32 H 1.08999 * 109.46854 * 293.74781 * 7 6 4 33 33 H 1.09000 * 109.47133 * 53.74626 * 7 6 4 34 34 H 1.09000 * 109.88225 * 300.44014 * 11 10 8 35 35 H 1.08995 * 109.88558 * 61.60733 * 11 10 8 36 36 H 1.08996 * 110.72180 * 140.55815 * 12 11 10 37 37 H 1.09004 * 110.71623 * 263.65171 * 12 11 10 38 38 H 0.96697 * 114.00086 * 61.44912 * 14 13 12 39 39 H 0.96995 * 120.00092 * 180.02562 * 18 17 15 40 40 H 1.08997 * 110.36788 * 274.73912 * 23 10 8 41 41 H 1.08993 * 110.36994 * 37.07203 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5690 1.4429 0.0517 5 1 3.9038 0.8561 0.9071 6 8 4.0864 0.8699 -1.1508 7 6 4.5103 -0.4878 -1.0122 8 6 4.0667 2.8588 0.1880 9 8 4.6315 3.3952 -0.7416 10 7 3.8842 3.5290 1.3431 11 6 3.3166 2.9688 2.5782 12 6 3.2780 4.1055 3.6213 13 6 3.3004 5.3841 2.7428 14 8 1.9905 5.7027 2.2685 15 6 3.8965 6.5460 3.4951 16 1 4.7954 7.0211 3.1308 17 6 3.2945 7.0023 4.6485 18 7 2.1998 6.4240 5.0921 19 14 4.0339 8.4420 5.5813 20 1 5.2559 8.9110 4.8801 21 1 3.0457 9.5484 5.6483 22 1 4.3881 8.0107 6.9574 23 6 4.2265 4.9433 1.5790 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.6469 1.9669 0.8709 30 1 1.7070 1.9457 -0.9079 31 1 4.7853 -0.8841 -1.9897 32 1 5.3719 -0.5332 -0.3462 33 1 3.6969 -1.0816 -0.5951 34 1 2.3069 2.6039 2.3900 35 1 3.9456 2.1552 2.9395 36 1 2.3618 4.0578 4.2098 37 1 4.1536 4.0641 4.2693 38 1 1.3525 5.8891 2.9707 39 1 1.7761 6.7452 5.9033 40 1 5.2733 5.0372 1.8679 41 1 4.0234 5.5366 0.6876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592852551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:21 Heat of formation + Delta-G solvation = -158.967739 kcal Electronic energy + Delta-G solvation = -22187.191307 eV Core-core repulsion = 18873.138217 eV Total energy + Delta-G solvation = -3314.053090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37139 -39.50795 -38.38242 -36.20042 -35.38826 -34.21409 -32.00896 -30.74692 -29.83833 -27.50350 -27.15304 -25.23794 -23.58799 -22.18324 -21.63205 -20.43237 -19.13521 -18.41033 -17.79514 -16.95784 -16.89213 -16.58310 -16.35376 -16.03903 -15.58473 -15.21291 -14.84894 -14.56902 -14.24674 -14.01673 -13.76029 -13.59592 -13.38085 -13.23695 -13.07492 -12.96120 -12.61026 -12.49849 -12.43775 -12.26012 -12.21629 -11.97981 -11.83153 -11.46215 -11.27759 -11.06375 -10.65854 -10.39479 -10.14055 -9.61803 -8.24002 -6.38482 1.41010 1.45756 1.49520 1.55590 1.79650 2.40236 2.92669 3.01639 3.42830 3.77616 3.78721 3.82680 3.99359 4.12679 4.21343 4.33934 4.36759 4.51366 4.53099 4.57053 4.60894 4.68344 4.74533 4.82682 4.86512 4.96730 5.03733 5.15721 5.23789 5.24264 5.30931 5.44249 5.46691 5.54962 5.77599 6.06630 6.10269 6.56673 6.65367 7.09254 7.31942 7.40854 8.82080 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029108 B = 0.004796 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.707370 B = 5836.322102 C = 6375.202212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.131 4.131 4 C 0.090 3.910 5 H 0.114 0.886 6 O -0.389 6.389 7 C 0.016 3.984 8 C 0.510 3.490 9 O -0.585 6.585 10 N -0.606 5.606 11 C 0.099 3.901 12 C -0.125 4.125 13 C 0.236 3.764 14 O -0.592 6.592 15 C -0.563 4.563 16 H 0.052 0.948 17 C 0.041 3.959 18 N -0.904 5.904 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.274 1.274 23 C 0.125 3.875 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.378 0.622 39 H 0.271 0.729 40 H 0.071 0.929 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.732 -16.012 -2.596 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.169 4.169 4 C 0.029 3.971 5 H 0.131 0.869 6 O -0.308 6.308 7 C -0.080 4.080 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.340 5.340 11 C -0.022 4.022 12 C -0.164 4.164 13 C 0.196 3.804 14 O -0.401 6.401 15 C -0.602 4.602 16 H 0.070 0.930 17 C -0.161 4.161 18 N -0.543 5.543 19 Si 0.783 3.217 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.199 1.199 23 C 0.002 3.998 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.254 -15.794 -3.770 16.286 hybrid contribution 0.182 1.309 1.164 1.762 sum -1.072 -14.485 -2.605 14.756 Atomic orbital electron populations 1.21766 0.94911 1.02502 1.01770 1.21571 0.96741 0.93881 1.03155 1.22050 0.91581 1.00242 1.03008 1.21935 0.95316 0.89678 0.90132 0.86883 1.88003 1.82434 1.28792 1.31551 1.23256 0.99573 0.81089 1.04060 1.21120 0.78856 0.89447 0.80662 1.90634 1.44655 1.71026 1.40247 1.48635 1.61272 1.12071 1.11990 1.22411 0.99149 0.97304 0.83384 1.22957 1.02592 0.94130 0.96732 1.19782 0.80555 0.91966 0.88079 1.86132 1.22585 1.92330 1.39008 1.21689 1.11807 1.17312 1.09345 0.92988 1.25541 0.94998 0.98509 0.97057 1.69766 1.19205 1.41608 1.23715 0.85519 0.78380 0.79343 0.78415 1.20103 1.20637 1.19909 1.22202 0.98475 0.80987 0.98152 0.92680 0.93411 0.90986 0.91002 0.89957 0.90107 0.92680 0.88165 0.93375 0.91050 0.90066 0.89126 0.90226 0.91826 0.77226 0.91909 0.91037 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.77 16 2 C -0.12 -2.01 4.89 30.59 0.15 -1.86 16 3 C -0.13 -3.29 4.84 30.60 0.15 -3.14 16 4 C 0.09 2.57 2.07 29.85 0.06 2.63 16 5 H 0.11 2.46 7.49 -2.39 -0.02 2.44 16 6 O -0.39 -11.50 9.67 -130.15 -1.26 -12.76 16 7 C 0.02 0.29 10.34 113.37 1.17 1.46 16 8 C 0.51 20.15 7.16 87.66 0.63 20.77 16 9 O -0.59 -28.57 16.83 15.81 0.27 -28.30 16 10 N -0.61 -23.82 3.32 -811.39 -2.70 -26.52 16 11 C 0.10 3.23 6.16 86.73 0.53 3.77 16 12 C -0.13 -5.10 5.37 31.78 0.17 -4.93 16 13 C 0.24 11.33 0.87 -10.07 -0.01 11.32 16 14 O -0.59 -29.97 13.17 -148.98 -1.96 -31.93 16 15 C -0.56 -29.43 8.27 25.60 0.21 -29.22 16 16 H 0.05 2.77 7.79 -2.91 -0.02 2.75 16 17 C 0.04 2.05 5.29 84.65 0.45 2.49 16 18 N -0.90 -45.03 10.76 21.45 0.23 -44.80 16 19 Si 0.96 40.70 29.54 68.60 2.03 42.73 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C 0.12 5.75 6.08 86.93 0.53 6.27 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.07 1.19 6.47 -2.39 -0.02 1.18 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 2.09 5.73 -2.39 -0.01 2.08 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.94 5.97 -2.39 -0.01 0.92 16 34 H 0.08 2.37 5.97 -2.39 -0.01 2.36 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 3.36 7.54 -2.39 -0.02 3.34 16 37 H 0.06 2.62 8.04 -2.38 -0.02 2.60 16 38 H 0.38 18.95 7.56 -74.06 -0.56 18.39 16 39 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 40 H 0.07 3.24 8.04 -2.39 -0.02 3.22 16 41 H 0.04 2.15 8.09 -2.39 -0.02 2.14 16 Total: -1.00 -65.00 328.00 1.82 -63.18 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.46 Total: 30.61 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 4.76 Total: 7.79 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -2.47 Total: -71.32 kcal Atomic # 8 Polarization: -70.04 SS G_CDS: -2.96 Total: -72.99 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -65.00 1.82 -63.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.785 kcal (2) G-P(sol) polarization free energy of solvation -65.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds