Wall clock time and date at job start Mon Mar 30 2020 01:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47791 * 2 1 4 4 C 1.52998 * 109.47394 * 174.37653 * 3 2 1 5 5 O 1.42901 * 109.47116 * 294.38193 * 3 2 1 6 6 C 1.42905 * 113.99730 * 299.99285 * 5 3 2 7 7 C 1.50707 * 109.47045 * 54.37677 * 3 2 1 8 8 O 1.21280 * 120.00030 * 241.51348 * 7 3 2 9 9 N 1.34777 * 119.99569 * 61.78782 * 7 3 2 10 10 C 1.47023 * 125.65302 * 354.55657 * 9 7 3 11 11 C 1.54318 * 107.27214 * 181.02176 * 10 9 7 12 12 C 1.55153 * 102.94360 * 22.19223 * 11 10 9 13 13 O 1.42903 * 111.00197 * 82.57073 * 12 11 10 14 14 C 1.50699 * 111.00890 * 206.38297 * 12 11 10 15 15 H 1.08002 * 119.99930 * 118.54299 * 14 12 11 16 16 C 1.37881 * 120.00022 * 298.55152 * 14 12 11 17 17 N 1.31514 * 119.99780 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47025 * 90.00246 * 18 16 14 20 20 H 1.48500 * 109.46891 * 209.99876 * 18 16 14 21 21 H 1.48496 * 109.47394 * 330.00088 * 18 16 14 22 22 C 1.47431 * 125.64341 * 174.24762 * 9 7 3 23 23 H 1.09001 * 109.46823 * 59.99569 * 1 2 3 24 24 H 1.08998 * 109.47819 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46926 * 299.99971 * 1 2 3 26 26 H 1.09003 * 109.46494 * 239.99731 * 2 1 3 27 27 H 1.09001 * 109.46823 * 120.00431 * 2 1 3 28 28 H 1.09000 * 109.47556 * 311.51048 * 4 3 2 29 29 H 1.09004 * 109.47124 * 71.50888 * 4 3 2 30 30 H 1.09005 * 109.47307 * 191.50799 * 4 3 2 31 31 H 1.08999 * 109.47473 * 300.00238 * 6 5 3 32 32 H 1.09003 * 109.46885 * 60.00305 * 6 5 3 33 33 H 1.09002 * 109.46620 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.87925 * 300.44452 * 10 9 7 35 35 H 1.09007 * 109.87978 * 61.60350 * 10 9 7 36 36 H 1.09000 * 110.72042 * 140.55629 * 11 10 9 37 37 H 1.09006 * 110.72024 * 263.65048 * 11 10 9 38 38 H 0.96696 * 113.99877 * 61.45626 * 13 12 11 39 39 H 0.97006 * 119.99819 * 180.02562 * 17 16 14 40 40 H 1.08992 * 110.36448 * 274.74306 * 22 9 7 41 41 H 1.09000 * 110.36760 * 37.07550 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 3.5635 1.4446 0.1413 5 8 1.6746 2.0769 -1.2271 6 6 2.2070 1.4414 -2.3911 7 6 1.4274 2.1919 1.1550 8 8 0.7226 3.1565 0.9463 9 7 1.6672 1.7935 2.4200 10 6 2.4094 0.5864 2.8121 11 6 2.4075 0.5281 4.3542 12 6 1.1816 1.4003 4.7334 13 8 -0.0292 0.6460 4.6499 14 6 1.3482 1.9986 6.1065 15 1 1.3761 3.0714 6.2283 16 6 1.4652 1.1765 7.2072 17 7 1.4309 -0.1298 7.0588 18 14 1.6725 1.9180 8.9090 19 1 0.3368 2.1327 9.5214 20 1 2.4638 0.9927 9.7592 21 1 2.3815 3.2182 8.7995 22 6 1.2342 2.4993 3.6398 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8532 0.7895 0.9630 29 1 4.0149 1.0875 -0.7844 30 1 3.9080 2.4583 0.3461 31 1 3.2958 1.4429 -2.3401 32 1 1.8471 0.4137 -2.4407 33 1 1.8845 1.9831 -3.2803 34 1 1.9186 -0.2984 2.4070 35 1 3.4340 0.6456 2.4446 36 1 2.2739 -0.4965 4.7012 37 1 3.3265 0.9536 4.7574 38 1 -0.0625 -0.1119 5.2496 39 1 1.5129 -0.7083 7.8332 40 1 1.9560 3.2706 3.9082 41 1 0.2464 2.9368 3.4945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:45 Heat of formation + Delta-G solvation = -118.898312 kcal Electronic energy + Delta-G solvation = -22861.276488 eV Core-core repulsion = 19548.960939 eV Total energy + Delta-G solvation = -3312.315549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36441 -38.19194 -36.85108 -34.58284 -33.21857 -32.24188 -30.39584 -29.54532 -28.21060 -27.24422 -25.26671 -23.84885 -23.02741 -20.89236 -19.89472 -19.04672 -17.16253 -16.68274 -16.22400 -15.65307 -15.34335 -15.03766 -14.95062 -14.40041 -14.02787 -13.76945 -13.26076 -13.19961 -12.91525 -12.76733 -12.51199 -11.99430 -11.93187 -11.77756 -11.71114 -11.42889 -11.27833 -11.21656 -11.02967 -10.98444 -10.52329 -10.51181 -10.43822 -9.99898 -9.54334 -9.41736 -9.14099 -8.69648 -8.23511 -7.96239 -6.30668 -4.38505 3.06720 3.13020 3.19146 3.26653 3.30625 4.12001 4.25887 4.60341 4.75478 4.93611 4.97254 5.16002 5.20654 5.29761 5.35687 5.47643 5.51248 5.57374 5.60516 5.76918 5.77956 5.83313 5.99085 6.02701 6.12753 6.20899 6.28314 6.42377 6.48148 6.64345 6.86086 6.92041 7.18263 7.26810 7.31464 7.71188 7.99926 8.12111 8.63126 8.67894 9.28794 9.37801 10.76693 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037873 B = 0.005026 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.145121 B = 5569.148013 C = 5646.477068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C 0.104 3.896 4 C -0.187 4.187 5 O -0.353 6.353 6 C 0.022 3.978 7 C 0.542 3.458 8 O -0.534 6.534 9 N -0.603 5.603 10 C 0.085 3.915 11 C -0.136 4.136 12 C 0.249 3.751 13 O -0.581 6.581 14 C -0.535 4.535 15 H 0.065 0.935 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.121 3.879 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.380 0.620 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.215 -3.538 -12.086 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.195 4.195 3 C 0.061 3.939 4 C -0.244 4.244 5 O -0.271 6.271 6 C -0.074 4.074 7 C 0.328 3.672 8 O -0.411 6.411 9 N -0.337 5.337 10 C -0.037 4.037 11 C -0.175 4.175 12 C 0.209 3.791 13 O -0.390 6.390 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.730 3.270 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.197 1.197 22 C 0.000 4.000 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.230 0.770 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.577 -2.536 -12.642 13.682 hybrid contribution 0.581 -0.458 1.316 1.510 sum 5.157 -2.993 -11.325 12.799 Atomic orbital electron populations 1.21714 0.94413 1.01643 1.03026 1.22360 0.98130 0.95138 1.03848 1.21343 0.94402 0.92571 0.85601 1.22601 0.94239 1.03978 1.03574 1.88086 1.73684 1.52924 1.12412 1.22871 0.98209 0.98120 0.88244 1.19402 0.81065 0.84398 0.82307 1.90674 1.37860 1.28399 1.84132 1.48406 1.54661 1.25826 1.04815 1.22633 0.94684 0.87244 0.99151 1.23192 1.01493 1.03384 0.89432 1.19626 0.81526 0.86713 0.91261 1.86149 1.40412 1.46233 1.66176 1.21452 1.51012 0.93827 0.91068 0.91721 1.24973 0.93528 0.94835 0.99557 1.69715 1.50039 1.02590 1.31116 0.86426 0.78345 0.79107 0.83169 1.20401 1.21083 1.19707 1.22434 0.99747 0.95466 0.82339 0.92263 0.92489 0.91912 0.90865 0.89206 0.89777 0.91156 0.91359 0.93743 0.93658 0.89519 0.91646 0.92246 0.89503 0.91324 0.77030 0.92249 0.90971 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.48 37.16 0.35 -1.87 16 2 C -0.16 -2.09 4.49 -26.74 -0.12 -2.21 16 3 C 0.10 1.60 0.55 -91.77 -0.05 1.55 16 4 C -0.19 -2.34 8.20 37.16 0.30 -2.04 16 5 O -0.35 -5.63 9.44 -55.14 -0.52 -6.15 16 6 C 0.02 0.24 10.24 101.05 1.03 1.27 16 7 C 0.54 10.78 5.09 -10.98 -0.06 10.72 16 8 O -0.53 -12.74 16.73 -14.35 -0.24 -12.98 16 9 N -0.60 -11.89 3.31 -170.38 -0.56 -12.45 16 10 C 0.09 1.47 5.28 -3.07 -0.02 1.46 16 11 C -0.14 -2.81 5.37 -24.90 -0.13 -2.95 16 12 C 0.25 5.87 0.87 -89.51 -0.08 5.79 16 13 O -0.58 -14.49 13.17 -35.23 -0.46 -14.95 16 14 C -0.54 -13.70 8.27 -34.44 -0.28 -13.98 16 15 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 16 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 17 N -0.90 -22.48 10.76 55.43 0.60 -21.88 16 18 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.12 2.71 6.12 -2.41 -0.01 2.69 16 23 H 0.06 0.87 7.84 -51.93 -0.41 0.47 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.14 7.06 -51.93 -0.37 0.77 16 26 H 0.07 0.78 6.26 -51.93 -0.32 0.46 16 27 H 0.09 1.17 4.62 -51.93 -0.24 0.93 16 28 H 0.08 0.98 4.90 -51.93 -0.25 0.73 16 29 H 0.07 0.70 6.00 -51.93 -0.31 0.39 16 30 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.04 0.41 6.18 -51.93 -0.32 0.08 16 32 H 0.04 0.43 6.30 -51.93 -0.33 0.10 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.07 5.61 -51.93 -0.29 0.77 16 35 H 0.06 0.87 5.40 -51.92 -0.28 0.59 16 36 H 0.09 1.87 7.55 -51.93 -0.39 1.48 16 37 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 38 H 0.38 9.41 7.56 45.56 0.34 9.75 16 39 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 40 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 41 H 0.07 1.71 7.99 -51.93 -0.41 1.30 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -29.46 313.31 -5.88 -35.33 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.23 Total: 11.29 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 0.84 Total: 2.20 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.03 Total: -34.33 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.22 Total: -34.09 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.46 -5.88 -35.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.564 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds