Wall clock time and date at job start Mon Mar 30 2020 01:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47791 * 2 1 4 4 C 1.52998 * 109.47394 * 174.37653 * 3 2 1 5 5 O 1.42901 * 109.47116 * 294.38193 * 3 2 1 6 6 C 1.42905 * 113.99730 * 299.99285 * 5 3 2 7 7 C 1.50707 * 109.47045 * 54.37677 * 3 2 1 8 8 O 1.21280 * 120.00030 * 241.51348 * 7 3 2 9 9 N 1.34777 * 119.99569 * 61.78782 * 7 3 2 10 10 C 1.47023 * 125.65302 * 354.55657 * 9 7 3 11 11 C 1.54318 * 107.27214 * 181.02176 * 10 9 7 12 12 C 1.55153 * 102.94360 * 22.19223 * 11 10 9 13 13 O 1.42903 * 111.00197 * 82.57073 * 12 11 10 14 14 C 1.50699 * 111.00890 * 206.38297 * 12 11 10 15 15 H 1.08002 * 119.99930 * 118.54299 * 14 12 11 16 16 C 1.37881 * 120.00022 * 298.55152 * 14 12 11 17 17 N 1.31514 * 119.99780 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47025 * 90.00246 * 18 16 14 20 20 H 1.48500 * 109.46891 * 209.99876 * 18 16 14 21 21 H 1.48496 * 109.47394 * 330.00088 * 18 16 14 22 22 C 1.47431 * 125.64341 * 174.24762 * 9 7 3 23 23 H 1.09001 * 109.46823 * 59.99569 * 1 2 3 24 24 H 1.08998 * 109.47819 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46926 * 299.99971 * 1 2 3 26 26 H 1.09003 * 109.46494 * 239.99731 * 2 1 3 27 27 H 1.09001 * 109.46823 * 120.00431 * 2 1 3 28 28 H 1.09000 * 109.47556 * 311.51048 * 4 3 2 29 29 H 1.09004 * 109.47124 * 71.50888 * 4 3 2 30 30 H 1.09005 * 109.47307 * 191.50799 * 4 3 2 31 31 H 1.08999 * 109.47473 * 300.00238 * 6 5 3 32 32 H 1.09003 * 109.46885 * 60.00305 * 6 5 3 33 33 H 1.09002 * 109.46620 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.87925 * 300.44452 * 10 9 7 35 35 H 1.09007 * 109.87978 * 61.60350 * 10 9 7 36 36 H 1.09000 * 110.72042 * 140.55629 * 11 10 9 37 37 H 1.09006 * 110.72024 * 263.65048 * 11 10 9 38 38 H 0.96696 * 113.99877 * 61.45626 * 13 12 11 39 39 H 0.97006 * 119.99819 * 180.02562 * 17 16 14 40 40 H 1.08992 * 110.36448 * 274.74306 * 22 9 7 41 41 H 1.09000 * 110.36760 * 37.07550 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 3.5635 1.4446 0.1413 5 8 1.6746 2.0769 -1.2271 6 6 2.2070 1.4414 -2.3911 7 6 1.4274 2.1919 1.1550 8 8 0.7226 3.1565 0.9463 9 7 1.6672 1.7935 2.4200 10 6 2.4094 0.5864 2.8121 11 6 2.4075 0.5281 4.3542 12 6 1.1816 1.4003 4.7334 13 8 -0.0292 0.6460 4.6499 14 6 1.3482 1.9986 6.1065 15 1 1.3761 3.0714 6.2283 16 6 1.4652 1.1765 7.2072 17 7 1.4309 -0.1298 7.0588 18 14 1.6725 1.9180 8.9090 19 1 0.3368 2.1327 9.5214 20 1 2.4638 0.9927 9.7592 21 1 2.3815 3.2182 8.7995 22 6 1.2342 2.4993 3.6398 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8532 0.7895 0.9630 29 1 4.0149 1.0875 -0.7844 30 1 3.9080 2.4583 0.3461 31 1 3.2958 1.4429 -2.3401 32 1 1.8471 0.4137 -2.4407 33 1 1.8845 1.9831 -3.2803 34 1 1.9186 -0.2984 2.4070 35 1 3.4340 0.6456 2.4446 36 1 2.2739 -0.4965 4.7012 37 1 3.3265 0.9536 4.7574 38 1 -0.0625 -0.1119 5.2496 39 1 1.5129 -0.7083 7.8332 40 1 1.9560 3.2706 3.9082 41 1 0.2464 2.9368 3.4945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:44 Heat of formation + Delta-G solvation = -140.184544 kcal Electronic energy + Delta-G solvation = -22862.199528 eV Core-core repulsion = 19548.960939 eV Total energy + Delta-G solvation = -3313.238589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75939 -39.63124 -38.45406 -36.27863 -34.47822 -34.20606 -31.70964 -31.02231 -29.89218 -28.14849 -27.05581 -25.06805 -24.44182 -22.25313 -21.61855 -20.52095 -19.05935 -18.05002 -17.59090 -16.93441 -16.84014 -16.68361 -16.25923 -16.13271 -15.44020 -15.11418 -14.66790 -14.45311 -14.32585 -14.03991 -13.94721 -13.53169 -13.45856 -13.30321 -13.13510 -12.90489 -12.86296 -12.68056 -12.33300 -12.27261 -12.23863 -12.09176 -11.77650 -11.57270 -11.25798 -10.71744 -10.58177 -10.53853 -10.12746 -9.56235 -8.23068 -6.37574 1.42631 1.46278 1.53988 1.56167 1.76038 2.40678 2.96936 3.03501 3.38193 3.60016 3.79506 3.85349 3.99389 4.11629 4.22346 4.29620 4.33546 4.46880 4.51873 4.57468 4.59280 4.65935 4.74772 4.84132 4.87697 4.89607 4.99521 5.04962 5.14782 5.22826 5.26573 5.31575 5.46577 5.55892 5.78315 6.09407 6.16347 6.59343 6.65975 7.12179 7.32680 7.41736 8.82736 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037873 B = 0.005026 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.145121 B = 5569.148013 C = 5646.477068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.109 3.891 4 C -0.182 4.182 5 O -0.389 6.389 6 C 0.014 3.986 7 C 0.532 3.468 8 O -0.587 6.587 9 N -0.603 5.603 10 C 0.091 3.909 11 C -0.126 4.126 12 C 0.237 3.763 13 O -0.593 6.593 14 C -0.564 4.564 15 H 0.052 0.948 16 C 0.041 3.959 17 N -0.904 5.904 18 Si 0.957 3.043 19 H -0.282 1.282 20 H -0.276 1.276 21 H -0.273 1.273 22 C 0.124 3.876 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.018 0.982 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.378 0.622 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 -5.284 -13.280 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C 0.066 3.934 4 C -0.239 4.239 5 O -0.309 6.309 6 C -0.082 4.082 7 C 0.321 3.679 8 O -0.467 6.467 9 N -0.336 5.336 10 C -0.030 4.030 11 C -0.164 4.164 12 C 0.197 3.803 13 O -0.401 6.401 14 C -0.602 4.602 15 H 0.070 0.930 16 C -0.161 4.161 17 N -0.542 5.542 18 Si 0.783 3.217 19 H -0.208 1.208 20 H -0.201 1.201 21 H -0.198 1.198 22 C 0.002 3.998 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.038 0.962 26 H 0.130 0.870 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.227 0.773 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.578 -4.313 -13.847 15.925 hybrid contribution -0.103 0.113 1.658 1.665 sum 6.475 -4.200 -12.189 14.427 Atomic orbital electron populations 1.21685 0.96001 1.02293 1.00617 1.22395 0.96633 0.93937 1.05990 1.21314 0.95815 0.92484 0.83797 1.22605 0.91763 1.03725 1.05830 1.88046 1.74806 1.54370 1.13641 1.23167 0.99478 0.98907 0.86615 1.20464 0.80171 0.84011 0.83228 1.90633 1.40242 1.30946 1.84903 1.48442 1.54626 1.26211 1.04298 1.22746 0.96734 0.86758 0.96771 1.22973 0.99608 1.01953 0.91895 1.19773 0.82182 0.87471 0.90901 1.86142 1.41637 1.46274 1.66062 1.21660 1.52292 0.93534 0.92697 0.92970 1.25539 0.93116 0.95278 1.02154 1.69766 1.49520 1.03029 1.31934 0.85575 0.77988 0.78509 0.79627 1.20769 1.20116 1.19756 1.22216 0.98325 0.95544 0.83755 0.92749 0.90253 0.96242 0.86991 0.88550 0.88612 0.87760 0.92656 0.91686 0.91972 0.88468 0.89965 0.88389 0.90297 0.91652 0.77295 0.91927 0.90794 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.48 71.98 0.68 -3.51 16 2 C -0.15 -3.55 4.49 30.59 0.14 -3.41 16 3 C 0.11 3.12 0.55 -11.54 -0.01 3.11 16 4 C -0.18 -3.89 8.20 71.98 0.59 -3.30 16 5 O -0.39 -11.75 9.44 -129.95 -1.23 -12.98 16 6 C 0.01 0.24 10.24 113.37 1.16 1.41 16 7 C 0.53 21.27 5.09 87.66 0.45 21.72 16 8 O -0.59 -29.17 16.73 16.00 0.27 -28.91 16 9 N -0.60 -23.78 3.31 -811.34 -2.68 -26.46 16 10 C 0.09 2.97 5.28 86.73 0.46 3.42 16 11 C -0.13 -5.09 5.37 31.78 0.17 -4.92 16 12 C 0.24 11.38 0.87 -10.07 -0.01 11.37 16 13 O -0.59 -30.32 13.17 -148.98 -1.96 -32.29 16 14 C -0.56 -29.43 8.27 25.60 0.21 -29.21 16 15 H 0.05 2.77 7.79 -2.91 -0.02 2.75 16 16 C 0.04 2.06 5.29 84.66 0.45 2.50 16 17 N -0.90 -45.05 10.76 21.45 0.23 -44.82 16 18 Si 0.96 40.69 29.54 68.60 2.03 42.72 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.12 5.75 6.12 86.93 0.53 6.28 16 23 H 0.05 1.56 7.84 -2.39 -0.02 1.54 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.02 0.69 7.06 -2.39 -0.02 0.67 16 26 H 0.11 1.80 6.26 -2.39 -0.01 1.78 16 27 H 0.10 2.12 4.62 -2.39 -0.01 2.11 16 28 H 0.10 1.78 4.90 -2.39 -0.01 1.77 16 29 H 0.10 1.53 6.00 -2.38 -0.01 1.51 16 30 H 0.05 1.34 8.09 -2.38 -0.02 1.32 16 31 H 0.06 0.89 6.18 -2.39 -0.01 0.87 16 32 H 0.06 0.89 6.30 -2.39 -0.02 0.88 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 2.45 5.61 -2.39 -0.01 2.44 16 35 H 0.10 2.49 5.40 -2.38 -0.01 2.48 16 36 H 0.08 3.32 7.55 -2.39 -0.02 3.31 16 37 H 0.06 2.66 8.04 -2.38 -0.02 2.64 16 38 H 0.38 19.10 7.56 -74.06 -0.56 18.54 16 39 H 0.27 12.88 8.31 -92.70 -0.77 12.11 16 40 H 0.07 3.33 8.04 -2.39 -0.02 3.31 16 41 H 0.04 2.09 7.99 -2.39 -0.02 2.07 16 Total: -1.00 -66.62 313.31 1.97 -64.66 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.49 Total: 32.62 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.82 Total: 5.45 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -2.45 Total: -71.28 kcal Atomic # 8 Polarization: -71.25 SS G_CDS: -2.92 Total: -74.17 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -66.62 1.97 -64.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.529 kcal (2) G-P(sol) polarization free energy of solvation -66.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds