Wall clock time and date at job start Mon Mar 30 2020 01:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46911 * 2 1 4 4 C 1.52997 * 109.47445 * 186.60224 * 3 2 1 5 5 O 1.42899 * 109.46979 * 66.59881 * 3 2 1 6 6 C 1.42898 * 114.00234 * 60.00216 * 5 3 2 7 7 C 1.50700 * 109.47102 * 306.60204 * 3 2 1 8 8 O 1.21281 * 120.00141 * 122.56817 * 7 3 2 9 9 N 1.34778 * 119.99788 * 302.57012 * 7 3 2 10 10 C 1.47429 * 125.64887 * 175.24629 * 9 7 3 11 11 C 1.54904 * 104.83330 * 155.83183 * 10 9 7 12 12 C 1.55160 * 101.58090 * 37.00990 * 11 10 9 13 13 O 1.42903 * 110.71914 * 83.03734 * 12 11 10 14 14 C 1.50695 * 110.72341 * 206.13139 * 12 11 10 15 15 H 1.08008 * 119.99970 * 26.11476 * 14 12 11 16 16 C 1.37880 * 120.00192 * 206.39588 * 14 12 11 17 17 N 1.31518 * 120.00010 * 171.38143 * 16 14 12 18 18 Si 1.86801 * 119.99873 * 351.37300 * 16 14 12 19 19 H 1.48502 * 109.46812 * 87.38001 * 18 16 14 20 20 H 1.48494 * 109.46874 * 207.37661 * 18 16 14 21 21 H 1.48493 * 109.47003 * 327.38237 * 18 16 14 22 22 C 1.47021 * 125.64972 * 355.20118 * 9 7 3 23 23 H 1.08998 * 109.47529 * 60.00480 * 1 2 3 24 24 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47487 * 299.99430 * 1 2 3 26 26 H 1.08999 * 109.47487 * 240.00570 * 2 1 3 27 27 H 1.08998 * 109.47529 * 119.99520 * 2 1 3 28 28 H 1.08997 * 109.47602 * 170.28574 * 4 3 2 29 29 H 1.09010 * 109.46850 * 290.28130 * 4 3 2 30 30 H 1.09003 * 109.47057 * 50.27837 * 4 3 2 31 31 H 1.08998 * 109.46938 * 59.99490 * 6 5 3 32 32 H 1.08994 * 109.47492 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.46892 * 300.00151 * 6 5 3 34 34 H 1.09006 * 110.36255 * 36.99551 * 10 9 7 35 35 H 1.08997 * 110.45976 * 274.72267 * 10 9 7 36 36 H 1.09001 * 111.01026 * 278.94087 * 11 10 9 37 37 H 1.08997 * 111.00588 * 155.08056 * 11 10 9 38 38 H 0.96704 * 113.99998 * 67.80966 * 13 12 11 39 39 H 0.96997 * 119.99975 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.88020 * 61.68366 * 22 9 7 41 41 H 1.08999 * 109.88374 * 300.51927 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5609 1.4459 -0.1658 5 8 1.6942 2.0699 1.2365 6 6 2.2452 1.4280 2.3881 7 6 1.4086 2.1985 -1.1406 8 8 0.7682 3.2047 -0.9206 9 7 1.5557 1.7564 -2.4053 10 6 0.9143 2.3376 -3.5988 11 6 1.8309 1.9308 -4.7794 12 6 2.2660 0.5023 -4.3580 13 8 1.2724 -0.4574 -4.7237 14 6 3.5970 0.1482 -4.9695 15 1 4.2954 0.9290 -5.2326 16 6 3.9210 -1.1723 -5.1986 17 7 5.0023 -1.4748 -5.8834 18 14 2.8241 -2.5316 -4.5362 19 1 1.7507 -2.8248 -5.5197 20 1 3.6346 -3.7548 -4.3087 21 1 2.2151 -2.0955 -3.2541 22 6 2.3830 0.6152 -2.8234 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.9054 2.4654 -0.3387 29 1 4.0258 1.0537 0.7388 30 1 3.8351 0.8207 -1.0156 31 1 3.3330 1.4300 2.3195 32 1 1.9371 1.9644 3.2855 33 1 1.8862 0.4000 2.4376 34 1 0.8659 3.4232 -3.5126 35 1 -0.0849 1.9237 -3.7341 36 1 2.6916 2.5956 -4.8529 37 1 1.2747 1.9092 -5.7165 38 1 1.1766 -0.5802 -5.6781 39 1 5.2304 -2.4038 -6.0442 40 1 2.0172 -0.2989 -2.3555 41 1 3.4219 0.7878 -2.5424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:49 Heat of formation + Delta-G solvation = -114.401360 kcal Electronic energy + Delta-G solvation = -23209.527511 eV Core-core repulsion = 19897.406965 eV Total energy + Delta-G solvation = -3312.120546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46998 -38.42986 -37.17053 -34.88580 -33.50678 -32.46462 -30.58277 -29.75057 -28.43526 -27.22659 -25.27861 -24.01035 -23.14875 -21.01599 -20.05949 -19.18725 -17.54175 -16.65280 -16.38586 -15.64310 -15.54716 -15.28570 -15.15142 -14.64488 -14.20350 -13.68202 -13.50442 -13.28148 -12.97578 -12.80178 -12.59836 -12.50597 -12.21516 -11.96296 -11.87574 -11.73741 -11.41333 -11.23194 -10.96228 -10.85141 -10.73891 -10.68449 -10.29754 -10.17088 -9.52889 -9.43360 -9.25793 -8.72910 -8.60308 -8.10778 -6.32489 -4.44304 2.94354 3.04188 3.31260 3.41836 3.55658 4.10079 4.33461 4.60371 4.74502 4.87988 4.96139 5.03463 5.18765 5.25266 5.31031 5.43726 5.46378 5.58215 5.60904 5.65115 5.71516 5.77851 5.85516 5.92158 5.99425 6.09092 6.16503 6.21861 6.34077 6.41466 6.54179 6.64731 6.71551 6.90765 7.17319 7.30321 7.94752 7.99346 8.52578 8.53657 8.71257 9.27713 10.76383 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.007155 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.857569 B = 3912.600152 C = 4306.746877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.163 4.163 3 C 0.105 3.895 4 C -0.191 4.191 5 O -0.355 6.355 6 C 0.022 3.978 7 C 0.545 3.455 8 O -0.538 6.538 9 N -0.609 5.609 10 C 0.110 3.890 11 C -0.147 4.147 12 C 0.220 3.780 13 O -0.563 6.563 14 C -0.556 4.556 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.882 5.882 18 Si 0.943 3.057 19 H -0.290 1.290 20 H -0.323 1.323 21 H -0.271 1.271 22 C 0.092 3.908 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.376 0.624 39 H 0.268 0.732 40 H 0.075 0.925 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 1.533 9.736 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 C 0.062 3.938 4 C -0.248 4.248 5 O -0.273 6.273 6 C -0.075 4.075 7 C 0.333 3.667 8 O -0.415 6.415 9 N -0.343 5.343 10 C -0.012 4.012 11 C -0.185 4.185 12 C 0.179 3.821 13 O -0.371 6.371 14 C -0.593 4.593 15 H 0.101 0.899 16 C -0.133 4.133 17 N -0.516 5.516 18 Si 0.778 3.222 19 H -0.218 1.218 20 H -0.254 1.254 21 H -0.198 1.198 22 C -0.030 4.030 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.225 0.775 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.289 2.114 10.507 11.952 hybrid contribution -0.111 -1.030 -0.282 1.073 sum -5.400 1.084 10.225 11.614 Atomic orbital electron populations 1.21697 0.94695 1.01631 1.02519 1.22423 0.97866 0.95269 1.04436 1.21299 0.94868 0.92346 0.85238 1.22630 0.93785 1.04175 1.04175 1.88050 1.73607 1.53072 1.12544 1.22875 0.98236 0.97996 0.88349 1.19453 0.80585 0.84458 0.82249 1.90660 1.41859 1.25201 1.83770 1.48473 1.47787 1.32668 1.05382 1.22213 0.96455 0.98175 0.84321 1.23388 0.98982 0.99730 0.96445 1.20034 0.87671 0.84645 0.89717 1.86128 1.60525 1.61732 1.28762 1.21226 1.00757 0.94214 1.43122 0.89888 1.25180 0.95424 0.99467 0.93232 1.69962 1.25578 1.19426 1.36656 0.85816 0.77720 0.78230 0.80464 1.21779 1.25386 1.19758 1.23201 0.94723 0.87780 0.97284 0.92486 0.92438 0.92221 0.88812 0.90575 0.91246 0.91001 0.89224 0.93559 0.89513 0.93635 0.91347 0.91828 0.90346 0.90467 0.77521 0.92247 0.90680 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.47 37.16 0.35 -1.84 16 2 C -0.16 -2.38 4.53 -26.73 -0.12 -2.50 16 3 C 0.11 1.70 0.55 -91.77 -0.05 1.65 16 4 C -0.19 -2.73 8.15 37.16 0.30 -2.42 16 5 O -0.35 -5.73 9.48 -55.13 -0.52 -6.25 16 6 C 0.02 0.25 10.24 101.05 1.03 1.28 16 7 C 0.55 10.47 5.06 -10.98 -0.06 10.41 16 8 O -0.54 -11.97 16.73 -14.34 -0.24 -12.21 16 9 N -0.61 -11.36 3.31 -170.52 -0.56 -11.92 16 10 C 0.11 1.94 6.92 -2.53 -0.02 1.93 16 11 C -0.15 -2.63 6.24 -24.58 -0.15 -2.78 16 12 C 0.22 4.52 0.69 -89.94 -0.06 4.45 16 13 O -0.56 -11.34 8.89 -35.23 -0.31 -11.65 16 14 C -0.56 -13.66 8.66 -34.44 -0.30 -13.96 16 15 H 0.08 2.24 8.00 -52.48 -0.42 1.82 16 16 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 17 N -0.88 -24.61 13.96 55.43 0.77 -23.84 16 18 Si 0.94 21.57 24.62 -169.99 -4.18 17.38 16 19 H -0.29 -6.51 7.08 56.52 0.40 -6.11 16 20 H -0.32 -7.66 7.11 56.52 0.40 -7.26 16 21 H -0.27 -6.04 5.53 56.52 0.31 -5.73 16 22 C 0.09 1.77 4.26 -3.07 -0.01 1.76 16 23 H 0.06 0.96 7.03 -51.93 -0.37 0.59 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 26 H 0.09 1.48 4.59 -51.93 -0.24 1.24 16 27 H 0.08 0.93 6.21 -51.93 -0.32 0.60 16 28 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 29 H 0.07 0.84 6.07 -51.92 -0.32 0.53 16 30 H 0.09 1.33 4.89 -51.93 -0.25 1.07 16 31 H 0.05 0.46 6.21 -51.93 -0.32 0.14 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.46 6.27 -51.93 -0.33 0.13 16 34 H 0.07 1.18 7.99 -51.93 -0.42 0.76 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.43 8.00 -51.93 -0.42 1.02 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.38 6.78 8.46 45.56 0.39 7.16 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.08 1.48 3.90 -51.93 -0.20 1.27 16 41 H 0.09 1.71 5.34 -51.93 -0.28 1.43 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -30.57 306.77 -4.84 -35.42 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.23 Total: 8.69 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 0.82 Total: -0.24 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.21 Total: -35.76 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.08 Total: -30.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.18 Total: 17.38 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.57 -4.84 -35.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.985 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds