Wall clock time and date at job start Mon Mar 30 2020 01:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46911 * 2 1 4 4 C 1.52997 * 109.47445 * 186.60224 * 3 2 1 5 5 O 1.42899 * 109.46979 * 66.59881 * 3 2 1 6 6 C 1.42898 * 114.00234 * 60.00216 * 5 3 2 7 7 C 1.50700 * 109.47102 * 306.60204 * 3 2 1 8 8 O 1.21281 * 120.00141 * 122.56817 * 7 3 2 9 9 N 1.34778 * 119.99788 * 302.57012 * 7 3 2 10 10 C 1.47429 * 125.64887 * 175.24629 * 9 7 3 11 11 C 1.54904 * 104.83330 * 155.83183 * 10 9 7 12 12 C 1.55160 * 101.58090 * 37.00990 * 11 10 9 13 13 O 1.42903 * 110.71914 * 83.03734 * 12 11 10 14 14 C 1.50695 * 110.72341 * 206.13139 * 12 11 10 15 15 H 1.08008 * 119.99970 * 26.11476 * 14 12 11 16 16 C 1.37880 * 120.00192 * 206.39588 * 14 12 11 17 17 N 1.31518 * 120.00010 * 171.38143 * 16 14 12 18 18 Si 1.86801 * 119.99873 * 351.37300 * 16 14 12 19 19 H 1.48502 * 109.46812 * 87.38001 * 18 16 14 20 20 H 1.48494 * 109.46874 * 207.37661 * 18 16 14 21 21 H 1.48493 * 109.47003 * 327.38237 * 18 16 14 22 22 C 1.47021 * 125.64972 * 355.20118 * 9 7 3 23 23 H 1.08998 * 109.47529 * 60.00480 * 1 2 3 24 24 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47487 * 299.99430 * 1 2 3 26 26 H 1.08999 * 109.47487 * 240.00570 * 2 1 3 27 27 H 1.08998 * 109.47529 * 119.99520 * 2 1 3 28 28 H 1.08997 * 109.47602 * 170.28574 * 4 3 2 29 29 H 1.09010 * 109.46850 * 290.28130 * 4 3 2 30 30 H 1.09003 * 109.47057 * 50.27837 * 4 3 2 31 31 H 1.08998 * 109.46938 * 59.99490 * 6 5 3 32 32 H 1.08994 * 109.47492 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.46892 * 300.00151 * 6 5 3 34 34 H 1.09006 * 110.36255 * 36.99551 * 10 9 7 35 35 H 1.08997 * 110.45976 * 274.72267 * 10 9 7 36 36 H 1.09001 * 111.01026 * 278.94087 * 11 10 9 37 37 H 1.08997 * 111.00588 * 155.08056 * 11 10 9 38 38 H 0.96704 * 113.99998 * 67.80966 * 13 12 11 39 39 H 0.96997 * 119.99975 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.88020 * 61.68366 * 22 9 7 41 41 H 1.08999 * 109.88374 * 300.51927 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5609 1.4459 -0.1658 5 8 1.6942 2.0699 1.2365 6 6 2.2452 1.4280 2.3881 7 6 1.4086 2.1985 -1.1406 8 8 0.7682 3.2047 -0.9206 9 7 1.5557 1.7564 -2.4053 10 6 0.9143 2.3376 -3.5988 11 6 1.8309 1.9308 -4.7794 12 6 2.2660 0.5023 -4.3580 13 8 1.2724 -0.4574 -4.7237 14 6 3.5970 0.1482 -4.9695 15 1 4.2954 0.9290 -5.2326 16 6 3.9210 -1.1723 -5.1986 17 7 5.0023 -1.4748 -5.8834 18 14 2.8241 -2.5316 -4.5362 19 1 1.7507 -2.8248 -5.5197 20 1 3.6346 -3.7548 -4.3087 21 1 2.2151 -2.0955 -3.2541 22 6 2.3830 0.6152 -2.8234 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.9054 2.4654 -0.3387 29 1 4.0258 1.0537 0.7388 30 1 3.8351 0.8207 -1.0156 31 1 3.3330 1.4300 2.3195 32 1 1.9371 1.9644 3.2855 33 1 1.8862 0.4000 2.4376 34 1 0.8659 3.4232 -3.5126 35 1 -0.0849 1.9237 -3.7341 36 1 2.6916 2.5956 -4.8529 37 1 1.2747 1.9092 -5.7165 38 1 1.1766 -0.5802 -5.6781 39 1 5.2304 -2.4038 -6.0442 40 1 2.0172 -0.2989 -2.3555 41 1 3.4219 0.7878 -2.5424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:48 Heat of formation + Delta-G solvation = -137.012679 kcal Electronic energy + Delta-G solvation = -23210.508012 eV Core-core repulsion = 19897.406965 eV Total energy + Delta-G solvation = -3313.101047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85536 -39.83202 -38.63792 -36.46113 -34.71846 -34.42252 -31.92482 -31.13907 -29.98849 -28.20252 -27.03412 -25.28702 -24.50260 -22.31871 -21.69491 -20.57016 -19.36962 -17.99501 -17.80909 -17.16590 -16.91800 -16.75014 -16.43496 -16.18126 -15.67782 -15.07734 -14.87613 -14.53181 -14.42343 -14.18498 -14.04110 -13.88874 -13.68835 -13.50049 -13.30318 -12.98970 -12.79438 -12.51526 -12.35504 -12.24337 -12.14936 -12.07870 -11.98368 -11.70518 -11.23356 -10.77961 -10.61333 -10.57540 -10.30190 -9.63165 -8.33184 -6.46871 1.48214 1.50193 1.55040 1.72271 1.75226 2.43175 2.90396 2.98581 3.31785 3.43127 3.55233 3.80055 3.88149 4.08443 4.13559 4.22532 4.26859 4.35535 4.43413 4.50413 4.56563 4.59178 4.65905 4.74564 4.83928 4.85054 4.92106 4.94976 5.04051 5.12830 5.18374 5.22149 5.24509 5.36205 5.48327 6.06542 6.10149 6.46555 6.61519 6.95328 7.05544 7.30339 8.79502 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.007155 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.857569 B = 3912.600152 C = 4306.746877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.160 4.160 3 C 0.107 3.893 4 C -0.188 4.188 5 O -0.382 6.382 6 C 0.013 3.987 7 C 0.539 3.461 8 O -0.575 6.575 9 N -0.608 5.608 10 C 0.110 3.890 11 C -0.138 4.138 12 C 0.217 3.783 13 O -0.562 6.562 14 C -0.548 4.548 15 H 0.048 0.952 16 C 0.029 3.971 17 N -0.930 5.930 18 Si 0.997 3.003 19 H -0.279 1.279 20 H -0.336 1.336 21 H -0.259 1.259 22 C 0.100 3.900 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.386 0.614 39 H 0.268 0.732 40 H 0.079 0.921 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 0.686 11.255 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.064 3.936 4 C -0.245 4.245 5 O -0.301 6.301 6 C -0.082 4.082 7 C 0.328 3.672 8 O -0.455 6.455 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.176 4.176 12 C 0.176 3.824 13 O -0.372 6.372 14 C -0.586 4.586 15 H 0.066 0.934 16 C -0.172 4.172 17 N -0.567 5.567 18 Si 0.830 3.170 19 H -0.206 1.206 20 H -0.268 1.268 21 H -0.184 1.184 22 C -0.022 4.022 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.340 1.276 12.019 13.649 hybrid contribution 0.234 -0.676 -0.748 1.036 sum -6.106 0.599 11.271 12.833 Atomic orbital electron populations 1.21674 0.94902 1.02427 1.01260 1.22423 0.97641 0.94263 1.05347 1.21266 0.95369 0.92494 0.84457 1.22615 0.92834 1.03650 1.05362 1.88020 1.74444 1.54236 1.13424 1.23165 0.99099 0.98831 0.87152 1.20130 0.79960 0.84133 0.82935 1.90630 1.43627 1.26919 1.84297 1.48503 1.47531 1.32348 1.05795 1.22268 0.96675 0.98456 0.83772 1.23297 0.99027 0.97656 0.97654 1.19926 0.85961 0.86086 0.90406 1.86095 1.59731 1.61527 1.29854 1.21365 1.01840 0.93140 1.42209 0.93385 1.25854 0.96351 1.01581 0.93375 1.70077 1.27837 1.19797 1.39001 0.84911 0.76157 0.75246 0.80642 1.20617 1.26806 1.18416 1.22990 0.94847 0.88191 0.96195 0.95057 0.90576 0.92149 0.89808 0.87569 0.92221 0.88042 0.89913 0.92190 0.87926 0.92150 0.91076 0.90895 0.91131 0.88375 0.76366 0.92312 0.90315 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.47 71.98 0.68 -3.28 16 2 C -0.16 -4.22 4.53 30.59 0.14 -4.08 16 3 C 0.11 3.25 0.55 -11.54 -0.01 3.24 16 4 C -0.19 -5.01 8.15 71.98 0.59 -4.42 16 5 O -0.38 -11.59 9.48 -129.96 -1.23 -12.83 16 6 C 0.01 0.25 10.24 113.37 1.16 1.41 16 7 C 0.54 20.25 5.06 87.66 0.44 20.70 16 8 O -0.57 -25.48 16.73 15.99 0.27 -25.22 16 9 N -0.61 -22.04 3.31 -811.79 -2.68 -24.72 16 10 C 0.11 3.73 6.92 86.85 0.60 4.33 16 11 C -0.14 -4.76 6.24 31.99 0.20 -4.56 16 12 C 0.22 8.62 0.69 -10.35 -0.01 8.61 16 13 O -0.56 -21.24 8.89 -148.98 -1.32 -22.56 16 14 C -0.55 -26.92 8.66 25.60 0.22 -26.70 16 15 H 0.05 2.66 8.00 -2.91 -0.02 2.64 16 16 C 0.03 1.50 5.46 84.65 0.46 1.96 16 17 N -0.93 -52.67 13.96 21.45 0.30 -52.38 16 18 Si 1.00 43.37 24.62 68.60 1.69 45.06 16 19 H -0.28 -11.58 7.08 99.48 0.70 -10.87 16 20 H -0.34 -15.30 7.11 99.48 0.71 -14.59 16 21 H -0.26 -10.62 5.53 99.48 0.55 -10.07 16 22 C 0.10 3.71 4.26 86.73 0.37 4.08 16 23 H 0.03 1.00 7.03 -2.39 -0.02 0.98 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.62 7.87 -2.39 -0.02 1.60 16 26 H 0.08 2.41 4.59 -2.39 -0.01 2.40 16 27 H 0.11 2.16 6.21 -2.39 -0.01 2.14 16 28 H 0.06 1.69 8.11 -2.39 -0.02 1.67 16 29 H 0.10 2.06 6.07 -2.38 -0.01 2.05 16 30 H 0.08 2.32 4.89 -2.39 -0.01 2.31 16 31 H 0.06 0.99 6.21 -2.39 -0.01 0.97 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 0.98 6.27 -2.39 -0.01 0.97 16 34 H 0.07 2.38 7.99 -2.38 -0.02 2.36 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.07 2.55 8.00 -2.39 -0.02 2.53 16 37 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.39 12.90 8.46 -74.05 -0.63 12.28 16 39 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.08 2.92 3.90 -2.38 -0.01 2.91 16 41 H 0.09 3.27 5.34 -2.39 -0.01 3.25 16 Total: -1.00 -65.72 306.77 2.13 -63.58 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.27 Total: 27.78 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.85 Total: 1.29 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -2.39 Total: -77.10 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: -2.29 Total: -60.61 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.69 Total: 45.06 kcal Total: -65.72 2.13 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.430 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds