Wall clock time and date at job start Mon Mar 30 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47090 * 2 1 4 4 H 1.08996 * 109.47153 * 171.26034 * 3 2 1 5 5 C 1.50703 * 109.47154 * 51.26261 * 3 2 1 6 6 O 1.21286 * 119.99498 * 256.40551 * 5 3 2 7 7 N 1.34772 * 119.99960 * 76.40567 * 5 3 2 8 8 C 1.47423 * 125.65033 * 353.75052 * 7 5 3 9 9 C 1.54911 * 104.83069 * 204.09403 * 8 7 5 10 10 C 1.55163 * 101.58071 * 322.98844 * 9 8 7 11 11 O 1.42894 * 110.71857 * 277.13874 * 10 9 8 12 12 C 1.50701 * 110.71745 * 153.86849 * 10 9 8 13 13 H 1.08005 * 119.99730 * 246.47850 * 12 10 9 14 14 C 1.37879 * 120.00420 * 66.47600 * 12 10 9 15 15 N 1.31516 * 119.99518 * 0.02562 * 14 12 10 16 16 Si 1.86789 * 120.00289 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47657 * 89.99799 * 16 14 12 18 18 H 1.48499 * 109.47323 * 210.00170 * 16 14 12 19 19 H 1.48502 * 109.47070 * 330.00073 * 16 14 12 20 20 C 1.47027 * 125.64639 * 173.70859 * 7 5 3 21 21 C 1.53006 * 109.47034 * 291.25939 * 3 2 1 22 22 H 1.09004 * 109.46833 * 182.94827 * 21 3 2 23 23 C 1.52995 * 109.47124 * 302.95239 * 21 3 2 24 24 O 1.42902 * 109.46677 * 62.95083 * 21 3 2 25 25 H 1.08996 * 109.47457 * 209.77424 * 1 2 3 26 26 H 1.08996 * 109.47267 * 329.78010 * 1 2 3 27 27 H 1.09002 * 109.46575 * 89.77372 * 1 2 3 28 28 H 1.08999 * 109.47315 * 240.00112 * 2 1 3 29 29 H 1.09001 * 109.46846 * 119.99443 * 2 1 3 30 30 H 1.08997 * 110.36664 * 322.92695 * 8 7 5 31 31 H 1.08997 * 110.36852 * 85.14614 * 8 7 5 32 32 H 1.09005 * 111.00572 * 81.06595 * 9 8 7 33 33 H 1.08997 * 111.00322 * 204.91838 * 9 8 7 34 34 H 0.96706 * 114.00367 * 293.52221 * 11 10 9 35 35 H 0.97000 * 119.99504 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.88235 * 298.39528 * 20 7 5 37 37 H 1.09001 * 109.88347 * 59.56001 * 20 7 5 38 38 H 1.08995 * 109.47427 * 67.12232 * 23 21 3 39 39 H 1.08995 * 109.46903 * 187.12768 * 23 21 3 40 40 H 1.09008 * 109.47060 * 307.12073 * 23 21 3 41 41 H 0.96699 * 113.99843 * 287.73879 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1187 1.4465 0.1561 5 6 1.3692 2.2125 1.1083 6 8 0.4746 2.9901 0.8511 7 7 1.7634 2.0370 2.3851 8 6 2.7406 1.0372 2.8530 9 6 2.3933 0.8117 4.3457 10 6 1.9940 2.2430 4.7923 11 8 3.1532 3.0138 5.1149 12 6 1.0440 2.1913 5.9611 13 1 0.0249 2.5291 5.8440 14 6 1.4759 1.7126 7.1799 15 7 2.7170 1.3017 7.3225 16 14 0.2982 1.6479 8.6283 17 1 -0.3996 0.3371 8.6408 18 1 1.0588 1.8158 9.8926 19 1 -0.7010 2.7393 8.5031 20 6 1.2908 2.8117 3.5419 21 6 1.7169 2.0977 -1.3444 22 1 2.1261 3.1078 -1.3639 23 6 2.3367 1.2743 -2.4751 24 8 0.2996 2.1544 -1.5181 25 1 -0.3634 -0.8919 0.5103 26 1 -0.3633 0.8880 0.5172 27 1 -0.3632 0.0041 -1.0277 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.6304 0.1084 2.2934 31 1 3.7553 1.4222 2.7518 32 1 1.5564 0.1214 4.4522 33 1 3.2625 0.4578 4.8999 34 1 3.6316 2.6976 5.8936 35 1 3.0209 0.9653 8.1801 36 1 1.5513 3.8626 3.4158 37 1 0.2107 2.7049 3.6433 38 1 1.8379 0.3070 -2.5358 39 1 2.2161 1.8051 -3.4194 40 1 3.3978 1.1240 -2.2757 41 1 -0.1092 1.2968 -1.6981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592948862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:00 Heat of formation + Delta-G solvation = -135.436171 kcal Electronic energy + Delta-G solvation = -22579.210514 eV Core-core repulsion = 19266.177829 eV Total energy + Delta-G solvation = -3313.032684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18221 -38.11654 -36.66071 -34.37356 -33.55093 -32.16107 -30.87604 -29.74492 -28.47867 -27.35113 -24.98494 -23.17186 -22.46390 -20.85614 -19.61835 -18.75495 -17.26283 -16.89213 -16.38815 -15.63626 -15.26442 -14.98189 -14.54772 -14.28813 -14.14200 -13.85418 -13.31877 -13.00331 -12.75739 -12.53350 -12.16691 -12.07033 -11.95959 -11.82586 -11.48121 -11.37037 -11.32599 -11.14771 -10.92746 -10.86370 -10.64095 -10.50867 -10.44041 -10.11568 -9.71624 -9.41443 -9.05331 -8.67433 -8.21157 -7.90576 -6.30959 -4.37852 3.17030 3.18970 3.26623 3.31308 3.57507 4.25836 4.45687 4.62048 4.74495 4.93070 4.98095 5.06380 5.07660 5.30181 5.31717 5.48777 5.55390 5.68663 5.69312 5.79368 5.84798 5.90513 5.94837 5.99791 6.08372 6.18675 6.28258 6.40178 6.49022 6.73544 6.92460 7.01073 7.29419 7.33782 7.72606 7.83917 8.00341 8.21152 8.64269 8.78303 9.30648 9.44539 10.76931 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.004771 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.015201 B = 5867.863861 C = 5962.587950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C -0.139 4.139 4 H 0.094 0.906 5 C 0.528 3.472 6 O -0.529 6.529 7 N -0.612 5.612 8 C 0.094 3.906 9 C -0.136 4.136 10 C 0.248 3.752 11 O -0.587 6.587 12 C -0.534 4.534 13 H 0.065 0.935 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.123 3.877 21 C 0.124 3.876 22 H 0.096 0.904 23 C -0.187 4.187 24 O -0.543 6.543 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.386 0.614 35 H 0.269 0.731 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -5.685 -13.518 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.160 4.160 3 C -0.161 4.161 4 H 0.112 0.888 5 C 0.316 3.684 6 O -0.406 6.406 7 N -0.346 5.346 8 C -0.029 4.029 9 C -0.175 4.175 10 C 0.208 3.792 11 O -0.397 6.397 12 C -0.572 4.572 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.539 5.539 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.196 1.196 20 C 0.002 3.998 21 C 0.064 3.936 22 H 0.114 0.886 23 C -0.245 4.245 24 O -0.351 6.351 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.238 0.762 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.346 -4.357 -14.015 14.738 hybrid contribution -0.203 -1.173 1.348 1.798 sum 1.143 -5.530 -12.667 13.869 Atomic orbital electron populations 1.22141 0.95238 1.03641 1.01295 1.21651 0.96943 0.94258 1.03121 1.22125 1.01496 0.96633 0.95808 0.88756 1.19885 0.83406 0.83060 0.82084 1.90724 1.29637 1.37694 1.82559 1.48666 1.43123 1.36341 1.06438 1.22541 0.92081 0.90570 0.97683 1.23303 1.02010 1.01132 0.91072 1.19428 0.84142 0.85627 0.90045 1.86098 1.42578 1.58674 1.52382 1.21571 0.97768 1.42894 0.95003 0.91717 1.24985 0.95516 0.93650 0.98865 1.69576 1.15709 1.42978 1.25639 0.86401 0.80727 0.78612 0.81181 1.20473 1.20991 1.19647 1.22036 0.98558 0.95003 0.84251 1.21571 0.82371 0.99266 0.90396 0.88616 1.22616 1.01882 1.00628 0.99332 1.86833 1.18989 1.35597 1.93724 0.92558 0.90250 0.92785 0.90758 0.90732 0.92065 0.92251 0.91556 0.89780 0.76241 0.92119 0.92351 0.91214 0.91927 0.91717 0.91462 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 8.38 37.16 0.31 -1.70 16 2 C -0.12 -1.37 5.38 -26.73 -0.14 -1.52 16 3 C -0.14 -1.86 1.93 -91.77 -0.18 -2.04 16 4 H 0.09 1.14 7.92 -51.93 -0.41 0.73 16 5 C 0.53 9.82 5.49 -10.99 -0.06 9.76 16 6 O -0.53 -11.68 14.45 -16.10 -0.23 -11.91 16 7 N -0.61 -12.08 3.33 -170.52 -0.57 -12.64 16 8 C 0.09 1.68 6.46 -2.53 -0.02 1.66 16 9 C -0.14 -2.91 5.67 -24.58 -0.14 -3.05 16 10 C 0.25 5.99 0.86 -89.94 -0.08 5.92 16 11 O -0.59 -14.87 13.09 -35.23 -0.46 -15.33 16 12 C -0.53 -14.00 8.21 -34.44 -0.28 -14.28 16 13 H 0.06 1.71 7.53 -52.48 -0.40 1.31 16 14 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 15 N -0.90 -22.97 10.70 55.43 0.59 -22.38 16 16 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.12 2.83 6.23 -3.07 -0.02 2.81 16 21 C 0.12 1.56 3.16 -26.73 -0.08 1.48 16 22 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 23 C -0.19 -1.63 8.79 37.15 0.33 -1.31 16 24 O -0.54 -7.93 10.79 -56.88 -0.61 -8.55 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.27 5.33 -51.93 -0.28 0.99 16 27 H 0.05 0.52 5.80 -51.93 -0.30 0.22 16 28 H 0.07 0.64 6.07 -51.93 -0.32 0.33 16 29 H 0.07 0.87 5.71 -51.93 -0.30 0.57 16 30 H 0.06 0.91 5.39 -51.93 -0.28 0.63 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 33 H 0.08 1.86 7.77 -51.93 -0.40 1.45 16 34 H 0.39 9.82 6.98 45.56 0.32 10.14 16 35 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.07 1.64 7.63 -51.93 -0.40 1.25 16 38 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.36 4.18 5.16 45.56 0.23 4.41 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -29.53 312.04 -7.01 -36.54 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -4.95 Total: 14.90 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.46 Total: -0.53 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.03 Total: -35.02 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.31 Total: -35.79 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.53 -7.01 -36.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592948862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.900 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds