Wall clock time and date at job start Mon Mar 30 2020 01:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47090 * 2 1 4 4 H 1.08996 * 109.47153 * 171.26034 * 3 2 1 5 5 C 1.50703 * 109.47154 * 51.26261 * 3 2 1 6 6 O 1.21286 * 119.99498 * 256.40551 * 5 3 2 7 7 N 1.34772 * 119.99960 * 76.40567 * 5 3 2 8 8 C 1.47423 * 125.65033 * 353.75052 * 7 5 3 9 9 C 1.54911 * 104.83069 * 204.09403 * 8 7 5 10 10 C 1.55163 * 101.58071 * 322.98844 * 9 8 7 11 11 O 1.42894 * 110.71857 * 277.13874 * 10 9 8 12 12 C 1.50701 * 110.71745 * 153.86849 * 10 9 8 13 13 H 1.08005 * 119.99730 * 246.47850 * 12 10 9 14 14 C 1.37879 * 120.00420 * 66.47600 * 12 10 9 15 15 N 1.31516 * 119.99518 * 0.02562 * 14 12 10 16 16 Si 1.86789 * 120.00289 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47657 * 89.99799 * 16 14 12 18 18 H 1.48499 * 109.47323 * 210.00170 * 16 14 12 19 19 H 1.48502 * 109.47070 * 330.00073 * 16 14 12 20 20 C 1.47027 * 125.64639 * 173.70859 * 7 5 3 21 21 C 1.53006 * 109.47034 * 291.25939 * 3 2 1 22 22 H 1.09004 * 109.46833 * 182.94827 * 21 3 2 23 23 C 1.52995 * 109.47124 * 302.95239 * 21 3 2 24 24 O 1.42902 * 109.46677 * 62.95083 * 21 3 2 25 25 H 1.08996 * 109.47457 * 209.77424 * 1 2 3 26 26 H 1.08996 * 109.47267 * 329.78010 * 1 2 3 27 27 H 1.09002 * 109.46575 * 89.77372 * 1 2 3 28 28 H 1.08999 * 109.47315 * 240.00112 * 2 1 3 29 29 H 1.09001 * 109.46846 * 119.99443 * 2 1 3 30 30 H 1.08997 * 110.36664 * 322.92695 * 8 7 5 31 31 H 1.08997 * 110.36852 * 85.14614 * 8 7 5 32 32 H 1.09005 * 111.00572 * 81.06595 * 9 8 7 33 33 H 1.08997 * 111.00322 * 204.91838 * 9 8 7 34 34 H 0.96706 * 114.00367 * 293.52221 * 11 10 9 35 35 H 0.97000 * 119.99504 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.88235 * 298.39528 * 20 7 5 37 37 H 1.09001 * 109.88347 * 59.56001 * 20 7 5 38 38 H 1.08995 * 109.47427 * 67.12232 * 23 21 3 39 39 H 1.08995 * 109.46903 * 187.12768 * 23 21 3 40 40 H 1.09008 * 109.47060 * 307.12073 * 23 21 3 41 41 H 0.96699 * 113.99843 * 287.73879 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1187 1.4465 0.1561 5 6 1.3692 2.2125 1.1083 6 8 0.4746 2.9901 0.8511 7 7 1.7634 2.0370 2.3851 8 6 2.7406 1.0372 2.8530 9 6 2.3933 0.8117 4.3457 10 6 1.9940 2.2430 4.7923 11 8 3.1532 3.0138 5.1149 12 6 1.0440 2.1913 5.9611 13 1 0.0249 2.5291 5.8440 14 6 1.4759 1.7126 7.1799 15 7 2.7170 1.3017 7.3225 16 14 0.2982 1.6479 8.6283 17 1 -0.3996 0.3371 8.6408 18 1 1.0588 1.8158 9.8926 19 1 -0.7010 2.7393 8.5031 20 6 1.2908 2.8117 3.5419 21 6 1.7169 2.0977 -1.3444 22 1 2.1261 3.1078 -1.3639 23 6 2.3367 1.2743 -2.4751 24 8 0.2996 2.1544 -1.5181 25 1 -0.3634 -0.8919 0.5103 26 1 -0.3633 0.8880 0.5172 27 1 -0.3632 0.0041 -1.0277 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.6304 0.1084 2.2934 31 1 3.7553 1.4222 2.7518 32 1 1.5564 0.1214 4.4522 33 1 3.2625 0.4578 4.8999 34 1 3.6316 2.6976 5.8936 35 1 3.0209 0.9653 8.1801 36 1 1.5513 3.8626 3.4158 37 1 0.2107 2.7049 3.6433 38 1 1.8379 0.3070 -2.5358 39 1 2.2161 1.8051 -3.4194 40 1 3.3978 1.1240 -2.2757 41 1 -0.1092 1.2968 -1.6981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592948862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:59 Heat of formation + Delta-G solvation = -157.094876 kcal Electronic energy + Delta-G solvation = -22580.149706 eV Core-core repulsion = 19266.177829 eV Total energy + Delta-G solvation = -3313.971876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54358 -39.60684 -38.13771 -36.11880 -34.67762 -34.16710 -31.74447 -31.43741 -30.13841 -28.54523 -26.76646 -24.34588 -23.76643 -22.15603 -21.31352 -20.16155 -19.18161 -18.25437 -17.54135 -17.06131 -16.92574 -16.53190 -16.06974 -15.80955 -15.45734 -15.02400 -14.76787 -14.27677 -14.12570 -13.89229 -13.75560 -13.31726 -13.23685 -13.20096 -12.97304 -12.86325 -12.76986 -12.64515 -12.40649 -12.28874 -12.15062 -12.01643 -11.78391 -11.43364 -11.29968 -10.78357 -10.68666 -10.43303 -10.14462 -9.53761 -8.27627 -6.41676 1.39794 1.43077 1.52238 1.73272 2.08652 2.38723 2.97822 3.40135 3.62493 3.77620 3.83695 3.93411 4.00874 4.14120 4.23090 4.27353 4.39729 4.42882 4.50851 4.57246 4.61768 4.75203 4.80994 4.90409 4.93791 5.02095 5.13672 5.20951 5.23923 5.27497 5.32610 5.46057 5.47463 5.50489 5.74670 6.04934 6.59472 6.71935 6.96751 7.27989 7.30328 7.43344 8.78913 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.004771 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.015201 B = 5867.863861 C = 5962.587950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C -0.130 4.130 4 H 0.116 0.884 5 C 0.522 3.478 6 O -0.571 6.571 7 N -0.616 5.616 8 C 0.104 3.896 9 C -0.127 4.127 10 C 0.236 3.764 11 O -0.595 6.595 12 C -0.565 4.565 13 H 0.049 0.951 14 C 0.039 3.961 15 N -0.907 5.907 16 Si 0.959 3.041 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.279 1.279 20 C 0.130 3.870 21 C 0.119 3.881 22 H 0.075 0.925 23 C -0.176 4.176 24 O -0.569 6.569 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.383 0.617 35 H 0.274 0.726 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 -7.900 -14.933 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.154 4.154 3 C -0.151 4.151 4 H 0.134 0.866 5 C 0.313 3.687 6 O -0.451 6.451 7 N -0.350 5.350 8 C -0.018 4.018 9 C -0.166 4.166 10 C 0.196 3.804 11 O -0.405 6.405 12 C -0.604 4.604 13 H 0.067 0.933 14 C -0.162 4.162 15 N -0.547 5.547 16 Si 0.785 3.215 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.204 1.204 20 C 0.006 3.994 21 C 0.059 3.941 22 H 0.093 0.907 23 C -0.233 4.233 24 O -0.380 6.380 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.422 -6.596 -15.447 16.970 hybrid contribution -0.574 -0.423 1.795 1.932 sum 1.847 -7.019 -13.651 15.461 Atomic orbital electron populations 1.22112 0.96196 1.01678 1.02375 1.21715 0.96025 0.92623 1.05073 1.22212 1.02075 0.97204 0.93650 0.86563 1.20989 0.82731 0.82615 0.82404 1.90697 1.31611 1.39658 1.83096 1.48772 1.43576 1.36442 1.06197 1.22567 0.91877 0.91767 0.95575 1.23084 1.01215 0.98762 0.93534 1.19560 0.83615 0.87329 0.89865 1.86082 1.42895 1.59355 1.52173 1.21763 0.97688 1.44220 0.96684 0.93288 1.25571 0.96966 0.93101 1.00594 1.69621 1.16332 1.42433 1.26282 0.85538 0.78901 0.78448 0.78617 1.19737 1.20129 1.20400 1.21719 0.97482 0.94438 0.85747 1.21674 0.81757 0.99177 0.91465 0.90655 1.22522 1.02713 1.00633 0.97444 1.86814 1.20427 1.36886 1.93871 0.91926 0.94686 0.90332 0.86736 0.90683 0.88078 0.91195 0.92430 0.90470 0.76594 0.91672 0.94481 0.93078 0.90011 0.91341 0.89678 0.77328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 8.38 71.98 0.60 -3.06 16 2 C -0.12 -2.18 5.38 30.60 0.16 -2.01 16 3 C -0.13 -3.16 1.93 -11.54 -0.02 -3.18 16 4 H 0.12 2.36 7.92 -2.39 -0.02 2.34 16 5 C 0.52 19.34 5.49 87.66 0.48 19.82 16 6 O -0.57 -26.04 14.45 17.65 0.26 -25.79 16 7 N -0.62 -24.33 3.33 -811.80 -2.70 -27.03 16 8 C 0.10 3.52 6.46 86.86 0.56 4.08 16 9 C -0.13 -5.39 5.67 31.99 0.18 -5.21 16 10 C 0.24 11.71 0.86 -10.35 -0.01 11.70 16 11 O -0.59 -30.74 13.09 -148.98 -1.95 -32.69 16 12 C -0.57 -30.49 8.21 25.60 0.21 -30.28 16 13 H 0.05 2.71 7.53 -2.91 -0.02 2.69 16 14 C 0.04 2.00 5.28 84.65 0.45 2.45 16 15 N -0.91 -46.19 10.70 21.45 0.23 -45.96 16 16 Si 0.96 41.56 29.54 68.60 2.03 43.58 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 C 0.13 6.19 6.23 86.73 0.54 6.73 16 21 C 0.12 2.76 3.16 30.59 0.10 2.85 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 C -0.18 -2.34 8.79 71.98 0.63 -1.71 16 24 O -0.57 -16.09 10.79 -128.28 -1.38 -17.47 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.03 1.10 5.33 -2.39 -0.01 1.09 16 27 H 0.08 1.28 5.80 -2.39 -0.01 1.27 16 28 H 0.11 1.29 6.07 -2.39 -0.01 1.28 16 29 H 0.07 1.41 5.71 -2.39 -0.01 1.40 16 30 H 0.10 2.65 5.39 -2.39 -0.01 2.63 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.50 8.04 -2.38 -0.02 2.48 16 33 H 0.08 3.36 7.77 -2.39 -0.02 3.34 16 34 H 0.38 19.82 6.98 -74.05 -0.52 19.30 16 35 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 36 H 0.04 1.88 8.07 -2.39 -0.02 1.86 16 37 H 0.05 2.57 7.63 -2.39 -0.02 2.56 16 38 H 0.08 0.79 6.56 -2.39 -0.02 0.78 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.37 7.90 5.16 -74.06 -0.38 7.52 16 Total: -1.00 -66.71 312.04 0.52 -66.19 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.15 Total: 36.99 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 3.89 Total: 2.18 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -2.47 Total: -72.99 kcal Atomic # 8 Polarization: -72.88 SS G_CDS: -3.08 Total: -75.95 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -66.71 0.52 -66.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592948862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.904 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds