Wall clock time and date at job start Mon Mar 30 2020 01:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.53002 * 109.47145 * 240.00070 * 2 1 3 5 5 O 1.45195 * 109.46974 * 120.00305 * 2 1 3 6 6 C 1.34223 * 117.00417 * 60.00031 * 5 2 1 7 7 O 1.20829 * 119.99764 * 359.97438 * 6 5 2 8 8 C 1.50703 * 120.00440 * 180.02562 * 6 5 2 9 9 H 1.08998 * 109.50488 * 31.77729 * 8 6 5 10 10 C 1.53094 * 109.50331 * 271.65010 * 8 6 5 11 11 O 1.43016 * 109.29447 * 183.23971 * 10 8 6 12 12 C 1.43011 * 113.74114 * 58.59332 * 11 10 8 13 13 C 1.53096 * 109.29702 * 301.40792 * 12 11 10 14 14 N 1.47014 * 109.50680 * 151.86557 * 8 6 5 15 15 C 1.46894 * 111.00001 * 302.32491 * 14 8 6 16 16 C 1.50702 * 109.46911 * 163.99932 * 15 14 8 17 17 H 1.08006 * 120.00207 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99971 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00384 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00161 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46997 * 89.99500 * 20 18 16 22 22 H 1.48497 * 109.47553 * 209.99469 * 20 18 16 23 23 H 1.48502 * 109.46846 * 329.99684 * 20 18 16 24 24 H 1.08997 * 109.47022 * 300.00270 * 1 2 3 25 25 H 1.09004 * 109.47137 * 59.99706 * 1 2 3 26 26 H 1.08998 * 109.47541 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47594 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47299 * 300.00195 * 3 2 1 29 29 H 1.09001 * 109.47095 * 60.00363 * 3 2 1 30 30 H 1.08998 * 109.47119 * 300.00526 * 4 2 1 31 31 H 1.09004 * 109.46921 * 60.00091 * 4 2 1 32 32 H 1.08995 * 109.47175 * 179.97438 * 4 2 1 33 33 H 1.09006 * 109.50740 * 303.14775 * 10 8 6 34 34 H 1.08995 * 109.51100 * 63.27899 * 10 8 6 35 35 H 1.08996 * 109.51175 * 181.44537 * 12 11 10 36 36 H 1.09010 * 109.50153 * 61.36009 * 12 11 10 37 37 H 1.09001 * 109.50937 * 176.75356 * 13 12 11 38 38 H 1.09001 * 109.50426 * 296.88705 * 13 12 11 39 39 H 1.08999 * 109.47218 * 283.99242 * 15 14 8 40 40 H 1.09004 * 109.47157 * 43.99900 * 15 14 8 41 41 H 0.96990 * 120.00505 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9559 -2.5025 0.5081 8 6 2.1173 -2.7435 2.5441 9 1 2.2136 -2.0691 3.3950 10 6 3.4730 -3.3892 2.2463 11 8 3.8736 -4.1847 3.3653 12 6 2.9429 -5.2177 3.6999 13 6 1.5817 -4.5905 4.0124 14 7 1.1383 -3.7942 2.8588 15 6 -0.1926 -3.2197 3.0959 16 6 -1.2304 -4.3101 3.0246 17 1 -0.9311 -5.3281 2.8228 18 6 -2.5620 -4.0081 3.2159 19 7 -2.9266 -2.7685 3.4610 20 14 -3.8484 -5.3596 3.1268 21 1 -4.0439 -5.9467 4.4767 22 1 -5.1322 -4.7902 2.6441 23 1 -3.3919 -6.4164 2.1887 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7208 -1.2495 33 1 3.3887 -4.0217 1.3625 34 1 4.2155 -2.6113 2.0684 35 1 3.3018 -5.7622 4.5732 36 1 2.8429 -5.9040 2.8588 37 1 0.8550 -5.3782 4.2117 38 1 1.6701 -3.9461 4.8871 39 1 -0.2184 -2.7577 4.0828 40 1 -0.4039 -2.4667 2.3365 41 1 -3.8633 -2.5561 3.5960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595577318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:28 Heat of formation + Delta-G solvation = -123.172389 kcal Electronic energy + Delta-G solvation = -22656.983381 eV Core-core repulsion = 19344.482494 eV Total energy + Delta-G solvation = -3312.500887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63947 -38.95829 -36.62166 -35.08340 -33.84651 -32.50758 -31.11022 -28.41623 -27.31885 -27.16252 -25.45427 -24.80488 -22.10526 -21.87533 -19.88576 -19.09931 -16.99870 -16.62347 -16.30823 -16.02250 -15.65383 -15.21771 -14.61465 -14.48213 -14.27710 -14.03748 -13.80140 -13.37700 -13.03297 -12.62870 -12.35363 -12.13000 -12.08664 -11.87499 -11.74377 -11.66666 -11.19998 -11.16391 -11.05996 -10.90855 -10.78958 -10.61479 -10.33640 -10.07939 -9.95251 -9.70283 -9.24003 -9.12599 -8.43098 -7.48821 -6.03061 -4.03838 2.69128 2.91672 3.31598 3.37886 3.42905 4.03972 4.38497 4.65857 4.86423 4.89167 4.99474 5.07760 5.12871 5.31717 5.34802 5.51006 5.52545 5.54294 5.67239 5.70331 5.76318 5.86604 5.88688 5.92785 5.98824 6.05891 6.10623 6.29900 6.39699 6.43671 6.64863 6.87766 7.04193 7.16420 7.30629 7.69838 7.92780 8.04574 8.32513 8.46716 9.01216 9.59299 11.08008 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.007535 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.446110 B = 3715.316239 C = 5242.835773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.359 6.359 6 C 0.471 3.529 7 O -0.464 6.464 8 C 0.056 3.944 9 H 0.069 0.931 10 C 0.081 3.919 11 O -0.383 6.383 12 C 0.058 3.942 13 C 0.031 3.969 14 N -0.514 5.514 15 C 0.190 3.810 16 C -0.500 4.500 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.035 0.965 39 H -0.007 1.007 40 H 0.036 0.964 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.021 4.329 -4.480 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.277 6.277 6 C 0.311 3.689 7 O -0.348 6.348 8 C -0.055 4.055 9 H 0.086 0.914 10 C 0.003 3.997 11 O -0.301 6.301 12 C -0.019 4.019 13 C -0.097 4.097 14 N -0.242 5.242 15 C 0.065 3.935 16 C -0.539 4.539 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.197 1.197 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.053 0.947 39 H 0.010 0.990 40 H 0.054 0.946 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.763 4.022 -5.051 13.419 hybrid contribution -1.267 0.010 0.460 1.348 sum 10.496 4.032 -4.591 12.145 Atomic orbital electron populations 1.22485 0.93658 1.05575 1.02374 1.22108 0.94724 0.91923 0.83126 1.21829 1.01781 0.93060 1.02872 1.22479 1.01198 1.03498 0.96674 1.86521 1.70223 1.25832 1.45123 1.23098 0.78048 0.80202 0.87512 1.90609 1.32414 1.69590 1.42156 1.21875 0.95465 0.93985 0.94153 0.91355 1.22460 0.92875 0.94659 0.89692 1.87943 1.45891 1.46526 1.49765 1.22832 0.88777 0.89581 1.00674 1.22695 0.96507 0.98813 0.91712 1.62332 1.02896 1.20997 1.37972 1.19884 0.82408 0.95865 0.95305 1.21025 0.90616 0.94595 1.47655 0.91805 1.24971 0.98551 0.95633 0.95427 1.69952 1.16924 1.17836 1.49097 0.86476 0.80765 0.81874 0.78183 1.20739 1.21276 1.19742 0.91865 0.91570 0.89142 0.91760 0.90652 0.91527 0.89616 0.91369 0.92309 0.91818 0.88346 0.88696 0.92231 0.88206 0.94685 0.98955 0.94576 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 8.37 37.16 0.31 -2.69 16 2 C 0.12 1.73 1.13 -90.62 -0.10 1.63 16 3 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16 4 C -0.18 -2.43 8.37 37.16 0.31 -2.12 16 5 O -0.36 -6.19 9.89 -39.24 -0.39 -6.58 16 6 C 0.47 9.21 5.17 36.01 0.19 9.39 16 7 O -0.46 -10.27 11.10 -18.75 -0.21 -10.48 16 8 C 0.06 1.06 2.49 -68.75 -0.17 0.89 16 9 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 10 C 0.08 1.27 6.27 37.21 0.23 1.50 16 11 O -0.38 -6.17 10.83 -35.23 -0.38 -6.55 16 12 C 0.06 0.89 7.01 37.21 0.26 1.15 16 13 C 0.03 0.58 5.47 -3.71 -0.02 0.56 16 14 N -0.51 -11.30 4.22 -229.16 -0.97 -12.27 16 15 C 0.19 5.03 4.40 -4.98 -0.02 5.01 16 16 C -0.50 -14.24 8.57 -34.44 -0.30 -14.53 16 17 H 0.06 1.79 7.54 -52.48 -0.40 1.40 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 20 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.09 1.82 5.89 -51.93 -0.31 1.52 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.38 5.89 -51.93 -0.31 1.07 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.10 1.95 7.27 -51.93 -0.38 1.57 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H -0.01 -0.21 8.05 -51.93 -0.42 -0.62 16 40 H 0.04 1.05 5.97 -51.93 -0.31 0.74 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -31.99 326.50 -7.13 -39.11 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.74 Total: 0.06 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 0.92 Total: 1.07 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.23 Total: -38.47 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.98 Total: -23.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.99 -7.13 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595577318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.058 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds