Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.53002 * 109.47145 * 240.00070 * 2 1 3 5 5 O 1.45195 * 109.46974 * 120.00305 * 2 1 3 6 6 C 1.34223 * 117.00417 * 60.00031 * 5 2 1 7 7 O 1.20829 * 119.99764 * 359.97438 * 6 5 2 8 8 C 1.50703 * 120.00440 * 180.02562 * 6 5 2 9 9 H 1.08998 * 109.50488 * 31.77729 * 8 6 5 10 10 C 1.53094 * 109.50331 * 271.65010 * 8 6 5 11 11 O 1.43016 * 109.29447 * 183.23971 * 10 8 6 12 12 C 1.43011 * 113.74114 * 58.59332 * 11 10 8 13 13 C 1.53096 * 109.29702 * 301.40792 * 12 11 10 14 14 N 1.47014 * 109.50680 * 151.86557 * 8 6 5 15 15 C 1.46894 * 111.00001 * 302.32491 * 14 8 6 16 16 C 1.50702 * 109.46911 * 163.99932 * 15 14 8 17 17 H 1.08006 * 120.00207 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99971 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00384 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00161 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46997 * 89.99500 * 20 18 16 22 22 H 1.48497 * 109.47553 * 209.99469 * 20 18 16 23 23 H 1.48502 * 109.46846 * 329.99684 * 20 18 16 24 24 H 1.08997 * 109.47022 * 300.00270 * 1 2 3 25 25 H 1.09004 * 109.47137 * 59.99706 * 1 2 3 26 26 H 1.08998 * 109.47541 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47594 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47299 * 300.00195 * 3 2 1 29 29 H 1.09001 * 109.47095 * 60.00363 * 3 2 1 30 30 H 1.08998 * 109.47119 * 300.00526 * 4 2 1 31 31 H 1.09004 * 109.46921 * 60.00091 * 4 2 1 32 32 H 1.08995 * 109.47175 * 179.97438 * 4 2 1 33 33 H 1.09006 * 109.50740 * 303.14775 * 10 8 6 34 34 H 1.08995 * 109.51100 * 63.27899 * 10 8 6 35 35 H 1.08996 * 109.51175 * 181.44537 * 12 11 10 36 36 H 1.09010 * 109.50153 * 61.36009 * 12 11 10 37 37 H 1.09001 * 109.50937 * 176.75356 * 13 12 11 38 38 H 1.09001 * 109.50426 * 296.88705 * 13 12 11 39 39 H 1.08999 * 109.47218 * 283.99242 * 15 14 8 40 40 H 1.09004 * 109.47157 * 43.99900 * 15 14 8 41 41 H 0.96990 * 120.00505 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9559 -2.5025 0.5081 8 6 2.1173 -2.7435 2.5441 9 1 2.2136 -2.0691 3.3950 10 6 3.4730 -3.3892 2.2463 11 8 3.8736 -4.1847 3.3653 12 6 2.9429 -5.2177 3.6999 13 6 1.5817 -4.5905 4.0124 14 7 1.1383 -3.7942 2.8588 15 6 -0.1926 -3.2197 3.0959 16 6 -1.2304 -4.3101 3.0246 17 1 -0.9311 -5.3281 2.8228 18 6 -2.5620 -4.0081 3.2159 19 7 -2.9266 -2.7685 3.4610 20 14 -3.8484 -5.3596 3.1268 21 1 -4.0439 -5.9467 4.4767 22 1 -5.1322 -4.7902 2.6441 23 1 -3.3919 -6.4164 2.1887 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7208 -1.2495 33 1 3.3887 -4.0217 1.3625 34 1 4.2155 -2.6113 2.0684 35 1 3.3018 -5.7622 4.5732 36 1 2.8429 -5.9040 2.8588 37 1 0.8550 -5.3782 4.2117 38 1 1.6701 -3.9461 4.8871 39 1 -0.2184 -2.7577 4.0828 40 1 -0.4039 -2.4667 2.3365 41 1 -3.8633 -2.5561 3.5960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595577318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = -145.226044 kcal Electronic energy + Delta-G solvation = -22657.939699 eV Core-core repulsion = 19344.482494 eV Total energy + Delta-G solvation = -3313.457205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10464 -40.36123 -38.04061 -36.75959 -35.14323 -34.60195 -32.52866 -30.26492 -28.40728 -28.29271 -27.32668 -26.21143 -23.83718 -23.48181 -21.30968 -20.55148 -18.69378 -18.41867 -17.72470 -17.58270 -17.06606 -16.57396 -16.39826 -16.03481 -15.70431 -15.48036 -15.21847 -14.77497 -14.57964 -14.23386 -13.93554 -13.68764 -13.34490 -13.10708 -12.94008 -12.91796 -12.86969 -12.78524 -12.57930 -12.47027 -12.33635 -12.17624 -12.13777 -11.62915 -11.46875 -11.37970 -10.97535 -10.69684 -10.56174 -9.27977 -8.24459 -6.34254 1.16768 1.36924 1.39522 1.50863 1.56083 2.35807 2.74104 3.03744 3.09518 3.60807 3.70732 3.76179 3.79148 3.92328 3.94589 4.06984 4.26740 4.31915 4.53433 4.58196 4.59445 4.64245 4.73794 4.80734 4.85163 4.86035 4.88428 4.91541 5.04484 5.07902 5.12933 5.26108 5.31492 5.51436 5.55705 5.91850 6.00393 6.10696 6.33684 6.77884 6.88729 7.34209 8.86922 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.007535 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.446110 B = 3715.316239 C = 5242.835773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 C -0.131 4.131 4 C -0.175 4.175 5 O -0.359 6.359 6 C 0.472 3.528 7 O -0.496 6.496 8 C 0.050 3.950 9 H 0.067 0.933 10 C 0.089 3.911 11 O -0.381 6.381 12 C 0.067 3.933 13 C 0.028 3.972 14 N -0.526 5.526 15 C 0.210 3.790 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.047 0.953 25 H 0.096 0.904 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.031 0.969 39 H -0.038 1.038 40 H 0.004 0.996 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.508 4.101 -5.085 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.232 4.232 5 O -0.276 6.276 6 C 0.313 3.687 7 O -0.382 6.382 8 C -0.061 4.061 9 H 0.085 0.915 10 C 0.012 3.988 11 O -0.300 6.300 12 C -0.009 4.009 13 C -0.100 4.100 14 N -0.253 5.253 15 C 0.084 3.916 16 C -0.556 4.556 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.796 3.204 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.191 1.191 24 H 0.066 0.934 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.049 0.951 39 H -0.020 1.020 40 H 0.022 0.978 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.288 3.797 -5.645 14.928 hybrid contribution -1.723 0.160 0.633 1.843 sum 11.565 3.957 -5.012 13.210 Atomic orbital electron populations 1.22446 0.95474 1.02788 1.03111 1.22545 0.93549 0.94084 0.82837 1.21858 1.02834 0.90078 1.04052 1.22422 1.02291 1.01641 0.96876 1.86511 1.69891 1.24674 1.46573 1.23224 0.77409 0.80843 0.87182 1.90606 1.33781 1.70485 1.43343 1.22081 0.96388 0.93651 0.93931 0.91549 1.22545 0.91436 0.95320 0.89515 1.87955 1.45633 1.46593 1.49775 1.22893 0.86441 0.89167 1.02436 1.22802 0.98533 0.98078 0.90589 1.62200 1.01855 1.21919 1.39312 1.19433 0.85139 0.94668 0.92352 1.21335 0.91612 0.94925 1.47742 0.91863 1.25929 1.00889 0.98148 0.94742 1.70088 1.17536 1.20014 1.49820 0.85349 0.77555 0.78690 0.78829 1.19196 1.20875 1.19116 0.93375 0.88551 0.93567 0.90069 0.87900 0.91950 0.92819 0.88822 0.90432 0.91787 0.85069 0.85035 0.91767 0.89364 0.95120 1.01989 0.97806 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.08 8.37 71.98 0.60 -5.47 16 2 C 0.11 3.03 1.13 -10.79 -0.01 3.01 16 3 C -0.13 -2.59 8.85 71.98 0.64 -1.96 16 4 C -0.18 -4.46 8.37 71.98 0.60 -3.86 16 5 O -0.36 -12.43 9.89 -51.35 -0.51 -12.94 16 6 C 0.47 18.99 5.17 71.24 0.37 19.36 16 7 O -0.50 -23.03 11.10 21.95 0.24 -22.79 16 8 C 0.05 1.92 2.49 44.18 0.11 2.03 16 9 H 0.07 2.56 8.14 -2.39 -0.02 2.55 16 10 C 0.09 2.66 6.27 72.01 0.45 3.12 16 11 O -0.38 -11.36 10.83 -148.98 -1.61 -12.97 16 12 C 0.07 1.92 7.01 72.01 0.50 2.43 16 13 C 0.03 1.05 5.47 86.31 0.47 1.52 16 14 N -0.53 -23.77 4.22 -878.93 -3.71 -27.48 16 15 C 0.21 11.73 4.40 85.56 0.38 12.11 16 16 C -0.52 -30.46 8.57 25.60 0.22 -30.24 16 17 H 0.06 3.64 7.54 -2.91 -0.02 3.62 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 20 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 26 H 0.05 1.97 5.89 -2.39 -0.01 1.96 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.74 5.89 -2.39 -0.01 1.73 16 31 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.09 3.51 7.27 -2.39 -0.02 3.49 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 39 H -0.04 -2.26 8.05 -2.39 -0.02 -2.28 16 40 H 0.00 0.24 5.97 -2.38 -0.01 0.23 16 41 H 0.26 15.35 8.31 -92.72 -0.77 14.58 16 Total: -1.00 -72.67 326.50 2.52 -70.15 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.00 Total: 13.47 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 4.80 Total: 2.55 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -3.42 Total: -85.06 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -1.88 Total: -48.70 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.67 2.52 -70.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595577318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.074 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds