Wall clock time and date at job start Mon Mar 30 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46926 * 2 1 4 4 C 1.52998 * 109.47350 * 239.99740 * 2 1 3 5 5 O 1.45203 * 109.46631 * 119.99616 * 2 1 3 6 6 C 1.34222 * 116.99911 * 60.00636 * 5 2 1 7 7 O 1.20822 * 120.00318 * 359.97438 * 6 5 2 8 8 C 1.50706 * 119.99842 * 179.97438 * 6 5 2 9 9 H 1.09007 * 109.50078 * 299.99242 * 8 6 5 10 10 C 1.53090 * 109.50818 * 60.08081 * 8 6 5 11 11 O 1.43019 * 109.25659 * 176.82667 * 10 8 6 12 12 C 1.43012 * 113.73915 * 301.32989 * 11 10 8 13 13 C 1.53097 * 109.25924 * 58.67258 * 12 11 10 14 14 N 1.47016 * 109.50611 * 179.91030 * 8 6 5 15 15 C 1.46902 * 110.99858 * 57.62717 * 14 8 6 16 16 C 1.50705 * 109.47105 * 175.58131 * 15 14 8 17 17 H 1.08007 * 119.99472 * 4.88745 * 16 15 14 18 18 C 1.37874 * 120.00375 * 184.88322 * 16 15 14 19 19 N 1.31513 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00367 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47164 * 59.99616 * 20 18 16 22 22 H 1.48492 * 109.47357 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46816 * 299.99935 * 20 18 16 24 24 H 1.08994 * 109.47573 * 300.00189 * 1 2 3 25 25 H 1.09001 * 109.46931 * 60.00167 * 1 2 3 26 26 H 1.08994 * 109.46744 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46688 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47180 * 299.99681 * 3 2 1 29 29 H 1.08994 * 109.47149 * 59.99552 * 3 2 1 30 30 H 1.09000 * 109.47108 * 299.99664 * 4 2 1 31 31 H 1.09001 * 109.47028 * 60.00152 * 4 2 1 32 32 H 1.09006 * 109.46949 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.51239 * 296.76299 * 10 8 6 34 34 H 1.08998 * 109.50700 * 56.89338 * 10 8 6 35 35 H 1.09004 * 109.50556 * 178.60304 * 12 11 10 36 36 H 1.09000 * 109.50589 * 298.69277 * 12 11 10 37 37 H 1.09010 * 109.50626 * 63.08234 * 13 12 11 38 38 H 1.09002 * 109.51004 * 183.16801 * 13 12 11 39 39 H 1.08996 * 109.47323 * 295.58090 * 15 14 8 40 40 H 1.08999 * 109.47144 * 55.58577 * 15 14 8 41 41 H 0.97004 * 120.00487 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1857 6 6 1.6533 -1.9683 1.3379 7 8 0.9560 -2.5025 0.5083 8 6 2.1182 -2.7436 2.5438 9 1 3.2077 -2.7729 2.5597 10 6 1.6063 -2.0644 3.8167 11 8 1.9874 -2.8443 4.9534 12 6 1.4905 -4.1850 4.9244 13 6 2.0012 -4.8857 3.6627 14 7 1.5911 -4.1145 2.4791 15 6 2.0136 -4.7830 1.2410 16 6 1.5475 -6.2160 1.2597 17 1 0.9261 -6.5712 2.0686 18 6 1.9142 -7.0736 0.2443 19 7 2.6712 -6.6411 -0.7404 20 14 1.3359 -8.8496 0.2671 21 1 -0.1485 -8.8871 0.2498 22 1 1.8634 -9.5573 -0.9270 23 1 1.8336 -9.5165 1.4971 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6768 -0.2075 -2.1392 32 1 3.1302 -0.7216 -1.2489 33 1 2.0401 -1.0678 3.8972 34 1 0.5198 -1.9869 3.7762 35 1 1.8406 -4.7221 5.8060 36 1 0.4006 -4.1692 4.9169 37 1 3.0889 -4.9493 3.6966 38 1 1.5796 -5.8894 3.6077 39 1 1.5771 -4.2701 0.3840 40 1 3.1006 -4.7555 1.1660 41 1 2.9295 -7.2444 -1.4546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595577321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:30 Heat of formation + Delta-G solvation = -116.661829 kcal Electronic energy + Delta-G solvation = -22607.603754 eV Core-core repulsion = 19295.385186 eV Total energy + Delta-G solvation = -3312.218568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67363 -38.92807 -36.73582 -34.97659 -33.92934 -32.47759 -31.07927 -28.31901 -27.35300 -27.24729 -25.46491 -24.68300 -22.15451 -21.80329 -19.92393 -19.14945 -16.99555 -16.60063 -16.28918 -15.95538 -15.65034 -15.26954 -14.54249 -14.43949 -14.25141 -14.12811 -13.94211 -13.40644 -12.98053 -12.62971 -12.43366 -12.11195 -12.03675 -11.83017 -11.76151 -11.62795 -11.27824 -11.20398 -11.05746 -10.94675 -10.77519 -10.63581 -10.26715 -10.11482 -9.98120 -9.78251 -9.07331 -8.90614 -8.37451 -7.40068 -6.01963 -4.02716 2.68429 2.87246 3.32784 3.37166 3.39541 4.07618 4.40074 4.70709 4.81396 4.84287 4.96490 5.02021 5.14373 5.33899 5.35872 5.50653 5.56848 5.58972 5.60779 5.73813 5.76232 5.80902 5.90467 5.94648 5.96867 5.99963 6.05768 6.38043 6.39308 6.52073 6.57798 6.81068 7.20706 7.31106 7.38444 7.72859 8.04658 8.12305 8.33580 8.51522 9.02580 9.59474 11.09290 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.006694 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.052327 B = 4182.134750 C = 5528.588720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.118 3.882 3 C -0.138 4.138 4 C -0.185 4.185 5 O -0.359 6.359 6 C 0.465 3.535 7 O -0.459 6.459 8 C 0.056 3.944 9 H 0.074 0.926 10 C 0.081 3.919 11 O -0.385 6.385 12 C 0.057 3.943 13 C 0.029 3.971 14 N -0.518 5.518 15 C 0.174 3.826 16 C -0.512 4.512 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.105 0.895 39 H 0.070 0.930 40 H -0.012 1.012 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 13.605 5.119 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.081 3.919 3 C -0.195 4.195 4 C -0.242 4.242 5 O -0.277 6.277 6 C 0.306 3.694 7 O -0.343 6.343 8 C -0.054 4.054 9 H 0.092 0.908 10 C 0.003 3.997 11 O -0.303 6.303 12 C -0.020 4.020 13 C -0.098 4.098 14 N -0.245 5.245 15 C 0.050 3.950 16 C -0.550 4.550 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.006 0.994 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.872 13.500 4.791 14.447 hybrid contribution 0.513 -1.218 -0.595 1.449 sum -1.360 12.282 4.197 13.051 Atomic orbital electron populations 1.22480 0.94225 1.05047 1.02181 1.22098 0.94288 0.91978 0.83494 1.21830 1.02105 0.92937 1.02655 1.22501 1.01663 1.03727 0.96281 1.86511 1.70555 1.25768 1.44907 1.23243 0.78435 0.80170 0.87560 1.90592 1.33255 1.68174 1.42282 1.21887 0.99272 0.92795 0.91482 0.90806 1.22484 0.99739 0.94077 0.83381 1.87941 1.76227 1.24206 1.41970 1.22871 0.98693 0.82172 0.98279 1.22727 0.98625 0.99422 0.89059 1.62388 1.58665 0.98303 1.05170 1.20231 0.93766 0.94383 0.86594 1.21099 1.31428 0.94243 1.08245 0.91916 1.24961 0.95212 0.98855 0.95416 1.69957 1.36352 1.35785 1.11353 0.86568 0.79127 0.84428 0.77322 1.20149 1.21341 1.20291 0.92245 0.91413 0.89449 0.91618 0.90657 0.91683 0.89210 0.91423 0.92126 0.88041 0.92218 0.88828 0.92470 0.94697 0.87740 0.91248 0.99431 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16 2 C 0.12 1.62 1.13 -90.62 -0.10 1.52 16 3 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 4 C -0.18 -2.72 8.37 37.16 0.31 -2.41 16 5 O -0.36 -5.78 9.82 -39.24 -0.39 -6.16 16 6 C 0.47 8.84 6.30 36.01 0.23 9.07 16 7 O -0.46 -10.09 9.16 -18.75 -0.17 -10.26 16 8 C 0.06 1.06 2.49 -68.75 -0.17 0.89 16 9 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 10 C 0.08 1.26 6.22 37.20 0.23 1.50 16 11 O -0.38 -6.29 10.83 -35.23 -0.38 -6.67 16 12 C 0.06 0.89 7.01 37.21 0.26 1.15 16 13 C 0.03 0.57 5.30 -3.66 -0.02 0.55 16 14 N -0.52 -11.42 4.47 -229.08 -1.02 -12.44 16 15 C 0.17 4.67 4.36 -4.97 -0.02 4.64 16 16 C -0.51 -14.46 8.33 -34.44 -0.29 -14.75 16 17 H 0.06 1.71 6.32 -52.48 -0.33 1.38 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 20 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.43 5.89 -51.93 -0.31 1.12 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.66 5.89 -51.93 -0.31 1.36 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.10 2.14 6.03 -51.93 -0.31 1.82 16 39 H 0.07 2.03 5.29 -51.93 -0.27 1.76 16 40 H -0.01 -0.35 8.13 -51.93 -0.42 -0.77 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -31.77 322.31 -7.00 -38.77 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.58 Total: 0.94 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 0.97 Total: 0.52 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.29 Total: -38.74 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.94 Total: -23.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.77 -7.00 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595577321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.889 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds