Wall clock time and date at job start Mon Mar 30 2020 01:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46926 * 2 1 4 4 C 1.52998 * 109.47350 * 239.99740 * 2 1 3 5 5 O 1.45203 * 109.46631 * 119.99616 * 2 1 3 6 6 C 1.34222 * 116.99911 * 60.00636 * 5 2 1 7 7 O 1.20822 * 120.00318 * 359.97438 * 6 5 2 8 8 C 1.50706 * 119.99842 * 179.97438 * 6 5 2 9 9 H 1.09007 * 109.50078 * 299.99242 * 8 6 5 10 10 C 1.53090 * 109.50818 * 60.08081 * 8 6 5 11 11 O 1.43019 * 109.25659 * 176.82667 * 10 8 6 12 12 C 1.43012 * 113.73915 * 301.32989 * 11 10 8 13 13 C 1.53097 * 109.25924 * 58.67258 * 12 11 10 14 14 N 1.47016 * 109.50611 * 179.91030 * 8 6 5 15 15 C 1.46902 * 110.99858 * 57.62717 * 14 8 6 16 16 C 1.50705 * 109.47105 * 175.58131 * 15 14 8 17 17 H 1.08007 * 119.99472 * 4.88745 * 16 15 14 18 18 C 1.37874 * 120.00375 * 184.88322 * 16 15 14 19 19 N 1.31513 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00367 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47164 * 59.99616 * 20 18 16 22 22 H 1.48492 * 109.47357 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46816 * 299.99935 * 20 18 16 24 24 H 1.08994 * 109.47573 * 300.00189 * 1 2 3 25 25 H 1.09001 * 109.46931 * 60.00167 * 1 2 3 26 26 H 1.08994 * 109.46744 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46688 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47180 * 299.99681 * 3 2 1 29 29 H 1.08994 * 109.47149 * 59.99552 * 3 2 1 30 30 H 1.09000 * 109.47108 * 299.99664 * 4 2 1 31 31 H 1.09001 * 109.47028 * 60.00152 * 4 2 1 32 32 H 1.09006 * 109.46949 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.51239 * 296.76299 * 10 8 6 34 34 H 1.08998 * 109.50700 * 56.89338 * 10 8 6 35 35 H 1.09004 * 109.50556 * 178.60304 * 12 11 10 36 36 H 1.09000 * 109.50589 * 298.69277 * 12 11 10 37 37 H 1.09010 * 109.50626 * 63.08234 * 13 12 11 38 38 H 1.09002 * 109.51004 * 183.16801 * 13 12 11 39 39 H 1.08996 * 109.47323 * 295.58090 * 15 14 8 40 40 H 1.08999 * 109.47144 * 55.58577 * 15 14 8 41 41 H 0.97004 * 120.00487 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1857 6 6 1.6533 -1.9683 1.3379 7 8 0.9560 -2.5025 0.5083 8 6 2.1182 -2.7436 2.5438 9 1 3.2077 -2.7729 2.5597 10 6 1.6063 -2.0644 3.8167 11 8 1.9874 -2.8443 4.9534 12 6 1.4905 -4.1850 4.9244 13 6 2.0012 -4.8857 3.6627 14 7 1.5911 -4.1145 2.4791 15 6 2.0136 -4.7830 1.2410 16 6 1.5475 -6.2160 1.2597 17 1 0.9261 -6.5712 2.0686 18 6 1.9142 -7.0736 0.2443 19 7 2.6712 -6.6411 -0.7404 20 14 1.3359 -8.8496 0.2671 21 1 -0.1485 -8.8871 0.2498 22 1 1.8634 -9.5573 -0.9270 23 1 1.8336 -9.5165 1.4971 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6768 -0.2075 -2.1392 32 1 3.1302 -0.7216 -1.2489 33 1 2.0401 -1.0678 3.8972 34 1 0.5198 -1.9869 3.7762 35 1 1.8406 -4.7221 5.8060 36 1 0.4006 -4.1692 4.9169 37 1 3.0889 -4.9493 3.6966 38 1 1.5796 -5.8894 3.6077 39 1 1.5771 -4.2701 0.3840 40 1 3.1006 -4.7555 1.1660 41 1 2.9295 -7.2444 -1.4546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595577321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:29 Heat of formation + Delta-G solvation = -138.933661 kcal Electronic energy + Delta-G solvation = -22608.569533 eV Core-core repulsion = 19295.385186 eV Total energy + Delta-G solvation = -3313.184347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11026 -40.33524 -38.13338 -36.65662 -35.16689 -34.55202 -32.52170 -30.16438 -28.39683 -28.27478 -27.35004 -26.09477 -23.79904 -23.47412 -21.37258 -20.54327 -18.61594 -18.44874 -17.65274 -17.49368 -17.04853 -16.58871 -16.40220 -15.91381 -15.66415 -15.65548 -15.27726 -14.72438 -14.56998 -14.20614 -13.86325 -13.64143 -13.25847 -13.08527 -12.96335 -12.90424 -12.85084 -12.73381 -12.59437 -12.46300 -12.33649 -12.20154 -12.02117 -11.69819 -11.40152 -11.32229 -10.84837 -10.71135 -10.35024 -9.23324 -8.22940 -6.32455 1.19024 1.37932 1.42489 1.49699 1.54006 2.37003 2.76692 3.09780 3.11104 3.58937 3.74002 3.78500 3.80266 3.94400 3.96331 4.11734 4.29872 4.36813 4.56209 4.59209 4.62771 4.69695 4.74888 4.82144 4.87811 4.89755 4.91613 4.96162 5.12015 5.15044 5.26526 5.31262 5.35460 5.52184 5.56876 5.99300 6.04519 6.12919 6.41016 6.80491 6.92199 7.35388 8.89210 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.006694 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.052327 B = 4182.134750 C = 5528.588720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.106 3.894 3 C -0.130 4.130 4 C -0.183 4.183 5 O -0.352 6.352 6 C 0.468 3.532 7 O -0.495 6.495 8 C 0.050 3.950 9 H 0.068 0.932 10 C 0.090 3.910 11 O -0.385 6.385 12 C 0.066 3.934 13 C 0.027 3.973 14 N -0.526 5.526 15 C 0.193 3.807 16 C -0.527 4.527 17 H 0.070 0.930 18 C -0.001 4.001 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.262 1.262 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.133 0.867 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.091 0.909 39 H 0.040 0.960 40 H -0.050 1.050 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 14.773 6.610 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.071 3.929 3 C -0.187 4.187 4 C -0.240 4.240 5 O -0.270 6.270 6 C 0.310 3.690 7 O -0.381 6.381 8 C -0.061 4.061 9 H 0.086 0.914 10 C 0.012 3.988 11 O -0.303 6.303 12 C -0.010 4.010 13 C -0.100 4.100 14 N -0.253 5.253 15 C 0.068 3.932 16 C -0.566 4.566 17 H 0.088 0.912 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.797 3.203 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.186 1.186 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.110 0.890 39 H 0.057 0.943 40 H -0.032 1.032 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.571 14.699 6.320 16.205 hybrid contribution 0.755 -1.485 -1.103 1.998 sum -1.816 13.214 5.217 14.322 Atomic orbital electron populations 1.22432 0.93716 1.03159 1.04171 1.22536 0.94934 0.93593 0.81880 1.21851 1.02285 0.89951 1.04634 1.22474 1.01474 1.01612 0.98456 1.86498 1.70170 1.24199 1.46091 1.23287 0.77732 0.80978 0.87050 1.90603 1.35017 1.69159 1.43311 1.22073 0.98950 0.91414 0.93623 0.91446 1.22581 1.00180 0.94780 0.81213 1.87951 1.76361 1.24254 1.41748 1.22908 0.99154 0.81828 0.97117 1.22807 0.97984 0.99295 0.89929 1.62244 1.58972 0.99829 1.04222 1.19775 0.90914 0.94296 0.88250 1.21472 1.31437 0.95113 1.08535 0.91205 1.25969 0.95146 1.03931 0.94809 1.70117 1.37694 1.37588 1.12175 0.85387 0.78749 0.78312 0.77880 1.19403 1.21002 1.18614 0.90725 0.88938 0.93183 0.91393 0.88090 0.90277 0.93721 0.88658 0.92335 0.84937 0.91634 0.85400 0.91587 0.95874 0.89033 0.94273 1.03233 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.53 8.37 71.98 0.60 -3.92 16 2 C 0.11 2.82 1.13 -10.79 -0.01 2.81 16 3 C -0.13 -2.26 8.85 71.98 0.64 -1.62 16 4 C -0.18 -5.48 8.37 71.98 0.60 -4.88 16 5 O -0.35 -11.21 9.82 -51.34 -0.50 -11.72 16 6 C 0.47 18.34 6.30 71.24 0.45 18.79 16 7 O -0.49 -23.07 9.16 21.97 0.20 -22.87 16 8 C 0.05 1.91 2.49 44.18 0.11 2.02 16 9 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 10 C 0.09 2.65 6.22 72.01 0.45 3.10 16 11 O -0.38 -11.61 10.83 -148.98 -1.61 -13.23 16 12 C 0.07 1.95 7.01 72.01 0.50 2.45 16 13 C 0.03 1.07 5.30 86.30 0.46 1.53 16 14 N -0.53 -23.91 4.47 -878.67 -3.92 -27.83 16 15 C 0.19 10.95 4.36 85.56 0.37 11.32 16 16 C -0.53 -30.80 8.33 25.60 0.21 -30.59 16 17 H 0.07 3.88 6.32 -2.91 -0.02 3.86 16 18 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 19 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 20 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.68 5.89 -2.39 -0.01 1.67 16 27 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 1.76 5.89 -2.39 -0.01 1.75 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.09 3.78 6.03 -2.39 -0.01 3.77 16 39 H 0.04 2.47 5.29 -2.39 -0.01 2.46 16 40 H -0.05 -3.12 8.13 -2.39 -0.02 -3.14 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -72.80 322.31 2.32 -70.48 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.00 Total: 14.89 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 4.85 Total: 1.42 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -3.64 Total: -86.23 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -1.92 Total: -47.81 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.80 2.32 -70.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595577321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.454 kcal (2) G-P(sol) polarization free energy of solvation -72.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds