Wall clock time and date at job start Mon Mar 30 2020 02:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99893 * 2 1 4 4 C 1.52999 * 109.46747 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47065 * 304.99021 * 4 3 2 6 6 O 1.42896 * 109.47732 * 64.99421 * 4 3 2 7 7 C 1.50707 * 109.46733 * 184.99918 * 4 3 2 8 8 O 1.21277 * 120.00067 * 18.90667 * 7 4 3 9 9 N 1.34776 * 119.99681 * 198.90964 * 7 4 3 10 10 C 1.46927 * 120.62944 * 174.28021 * 9 7 4 11 11 C 1.53188 * 108.77570 * 126.41252 * 10 9 7 12 12 C 1.53044 * 109.31385 * 54.63608 * 11 10 9 13 13 C 1.53035 * 109.53499 * 298.63482 * 12 11 10 14 14 H 1.09004 * 109.50170 * 301.38115 * 13 12 11 15 15 C 1.50698 * 109.49870 * 181.31419 * 13 12 11 16 16 H 1.07999 * 120.00345 * 240.00327 * 15 13 12 17 17 C 1.37879 * 119.99700 * 59.99823 * 15 13 12 18 18 N 1.31513 * 120.00161 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99844 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47320 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47065 * 120.00198 * 19 17 15 22 22 H 1.48501 * 109.46866 * 239.99910 * 19 17 15 23 23 C 1.46928 * 120.63377 * 354.30249 * 9 7 4 24 24 H 1.09004 * 109.47145 * 300.00433 * 1 2 3 25 25 H 1.08997 * 109.46823 * 60.00654 * 1 2 3 26 26 H 1.08998 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46899 * 59.99484 * 3 2 1 28 28 H 1.08997 * 109.46159 * 299.99469 * 3 2 1 29 29 H 1.08994 * 109.47423 * 300.00743 * 5 4 3 30 30 H 1.09010 * 109.46878 * 60.00623 * 5 4 3 31 31 H 1.08998 * 109.47367 * 180.02562 * 5 4 3 32 32 H 0.96704 * 113.99688 * 59.99607 * 6 4 3 33 33 H 1.09001 * 109.58485 * 6.62616 * 10 9 7 34 34 H 1.09006 * 109.58378 * 246.20408 * 10 9 7 35 35 H 1.08999 * 109.50084 * 294.68310 * 11 10 9 36 36 H 1.09001 * 109.49438 * 174.58706 * 11 10 9 37 37 H 1.09002 * 109.45743 * 58.65029 * 12 11 10 38 38 H 1.08990 * 109.45833 * 178.62463 * 12 11 10 39 39 H 0.97001 * 119.99847 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58839 * 113.79333 * 23 9 7 41 41 H 1.09001 * 109.58327 * 353.37697 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9790 0.3195 1.1808 6 8 3.9649 0.5795 -1.2218 7 6 4.1480 2.5560 0.1232 8 8 3.4845 3.4811 0.5413 9 7 5.4332 2.7544 -0.2309 10 6 6.0084 4.1064 -0.2349 11 6 7.2833 4.1024 0.6144 12 6 8.2301 3.0150 0.1011 13 6 7.5574 1.6468 0.2331 14 1 7.2990 1.4675 1.2768 15 6 8.5025 0.5736 -0.2424 16 1 8.2241 -0.0639 -1.0686 17 6 9.7227 0.4057 0.3772 18 7 10.0616 1.1817 1.3834 19 14 10.8946 -0.9241 -0.2128 20 1 10.2812 -1.6554 -1.3504 21 1 12.1687 -0.3013 -0.6533 22 1 11.1652 -1.8732 0.8969 23 6 6.2856 1.6229 -0.6205 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8462 -0.8901 29 1 3.6514 0.7810 2.1123 30 1 3.5359 -0.6724 1.0913 31 1 5.0656 0.2338 1.1807 32 1 3.7176 1.0751 -2.0146 33 1 5.2907 4.8101 0.1867 34 1 6.2511 4.3971 -1.2571 35 1 7.0270 3.9003 1.6544 36 1 7.7718 5.0741 0.5418 37 1 8.4663 3.2039 -0.9461 38 1 9.1482 3.0263 0.6882 39 1 10.9200 1.0632 1.8195 40 1 6.5509 1.7110 -1.6741 41 1 5.7507 0.6880 -0.4534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:35 Heat of formation + Delta-G solvation = -132.896634 kcal Electronic energy + Delta-G solvation = -22537.769657 eV Core-core repulsion = 19224.847095 eV Total energy + Delta-G solvation = -3312.922562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36761 -38.09811 -36.79670 -36.36765 -33.32643 -31.82016 -31.23239 -30.04760 -27.45489 -25.91759 -25.17306 -24.75612 -22.43013 -21.30042 -19.87846 -18.76112 -17.65328 -16.41516 -16.29938 -16.04886 -15.74693 -15.40256 -14.84401 -14.56401 -14.04986 -13.79396 -13.65946 -13.12319 -12.87272 -12.72741 -12.28041 -12.18549 -12.16255 -11.88574 -11.82652 -11.54069 -11.34875 -11.00528 -10.86972 -10.71188 -10.39077 -10.21830 -9.94706 -9.80310 -9.75190 -9.57023 -8.95417 -8.77584 -8.40167 -7.94078 -6.03192 -4.10719 2.79097 3.13933 3.27999 3.36696 3.40705 3.92410 4.27850 4.40986 4.71135 4.90341 4.92328 5.22373 5.23728 5.26598 5.48155 5.52911 5.60503 5.65067 5.74837 5.89337 5.97203 6.05972 6.07803 6.32471 6.36136 6.45374 6.54087 6.70598 6.82928 6.93251 7.02962 7.15744 7.34393 7.57144 7.68639 7.87593 7.91592 8.08260 8.34030 8.48056 8.93564 9.54739 11.02158 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.005650 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.131186 B = 4954.169072 C = 5844.513581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.053 3.947 4 C 0.127 3.873 5 C -0.141 4.141 6 O -0.530 6.530 7 C 0.489 3.511 8 O -0.562 6.562 9 N -0.586 5.586 10 C 0.110 3.890 11 C -0.133 4.133 12 C -0.114 4.114 13 C 0.038 3.962 14 H 0.028 0.972 15 C -0.513 4.513 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.100 3.900 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.374 0.626 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.260 0.740 40 H 0.056 0.944 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 1.300 -3.363 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.025 4.025 4 C 0.083 3.917 5 C -0.198 4.198 6 O -0.335 6.335 7 C 0.276 3.724 8 O -0.442 6.442 9 N -0.317 5.317 10 C -0.012 4.012 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.018 3.982 14 H 0.046 0.954 15 C -0.552 4.552 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.020 4.020 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.222 0.778 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.261 1.194 -2.624 13.571 hybrid contribution 0.375 0.078 -0.670 0.771 sum -12.886 1.272 -3.294 13.361 Atomic orbital electron populations 1.22741 0.81251 1.02635 0.99877 1.87917 1.19296 1.27026 1.95413 1.22893 0.92826 0.84861 1.01875 1.21231 0.91386 0.90633 0.88410 1.21823 1.03811 1.00193 0.93956 1.86716 1.79997 1.52309 1.14511 1.21081 0.82641 0.90334 0.78386 1.90638 1.62054 1.44248 1.47283 1.48337 1.09839 1.09602 1.63905 1.21643 0.95999 0.83554 0.99996 1.21987 0.95635 1.00099 0.99423 1.21646 1.00107 0.93933 0.99469 1.19016 0.90236 0.93567 0.95333 0.95368 1.21103 1.01081 1.16057 1.16916 0.92290 1.24940 0.98000 0.96045 0.94807 1.69888 1.22103 1.38341 1.22367 0.86543 0.80876 0.81864 0.78771 1.19673 1.21104 1.21051 1.22563 0.92803 0.87566 0.99105 0.94134 0.94263 0.89572 0.91182 0.92941 0.91120 0.89925 0.89837 0.77845 0.90373 0.92127 0.92467 0.92555 0.94629 0.88670 0.93030 0.92574 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.05 9.79 -40.08 -0.39 -5.44 16 3 C 0.05 0.72 4.62 37.16 0.17 0.89 16 4 C 0.13 1.97 0.75 -91.77 -0.07 1.90 16 5 C -0.14 -2.22 8.35 37.16 0.31 -1.91 16 6 O -0.53 -7.88 10.06 -40.08 -0.40 -8.28 16 7 C 0.49 8.70 6.62 -10.98 -0.07 8.63 16 8 O -0.56 -11.04 15.33 5.56 0.09 -10.96 16 9 N -0.59 -10.77 2.97 -172.76 -0.51 -11.28 16 10 C 0.11 1.95 6.44 -3.71 -0.02 1.92 16 11 C -0.13 -2.54 6.08 -26.61 -0.16 -2.70 16 12 C -0.11 -2.55 4.96 -26.69 -0.13 -2.69 16 13 C 0.04 0.89 2.25 -91.66 -0.21 0.68 16 14 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.51 -13.37 8.56 -34.44 -0.29 -13.67 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.56 11.31 55.43 0.63 -23.93 16 19 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.10 1.98 4.31 -3.71 -0.02 1.97 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.98 7.72 -51.93 -0.40 0.58 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.24 7.56 -51.92 -0.39 0.85 16 31 H 0.08 1.48 6.33 -51.93 -0.33 1.15 16 32 H 0.37 4.29 9.04 45.56 0.41 4.70 16 33 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.10 2.01 3.64 -51.93 -0.19 1.82 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -29.56 322.54 -6.00 -35.56 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.77 Total: 5.78 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 0.52 Total: -1.97 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.11 Total: -35.21 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.71 Total: -24.68 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.56 -6.00 -35.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.334 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds