Wall clock time and date at job start Mon Mar 30 2020 02:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99893 * 2 1 4 4 C 1.52999 * 109.46747 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47065 * 304.99021 * 4 3 2 6 6 O 1.42896 * 109.47732 * 64.99421 * 4 3 2 7 7 C 1.50707 * 109.46733 * 184.99918 * 4 3 2 8 8 O 1.21277 * 120.00067 * 18.90667 * 7 4 3 9 9 N 1.34776 * 119.99681 * 198.90964 * 7 4 3 10 10 C 1.46927 * 120.62944 * 174.28021 * 9 7 4 11 11 C 1.53188 * 108.77570 * 126.41252 * 10 9 7 12 12 C 1.53044 * 109.31385 * 54.63608 * 11 10 9 13 13 C 1.53035 * 109.53499 * 298.63482 * 12 11 10 14 14 H 1.09004 * 109.50170 * 301.38115 * 13 12 11 15 15 C 1.50698 * 109.49870 * 181.31419 * 13 12 11 16 16 H 1.07999 * 120.00345 * 240.00327 * 15 13 12 17 17 C 1.37879 * 119.99700 * 59.99823 * 15 13 12 18 18 N 1.31513 * 120.00161 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99844 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47320 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47065 * 120.00198 * 19 17 15 22 22 H 1.48501 * 109.46866 * 239.99910 * 19 17 15 23 23 C 1.46928 * 120.63377 * 354.30249 * 9 7 4 24 24 H 1.09004 * 109.47145 * 300.00433 * 1 2 3 25 25 H 1.08997 * 109.46823 * 60.00654 * 1 2 3 26 26 H 1.08998 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46899 * 59.99484 * 3 2 1 28 28 H 1.08997 * 109.46159 * 299.99469 * 3 2 1 29 29 H 1.08994 * 109.47423 * 300.00743 * 5 4 3 30 30 H 1.09010 * 109.46878 * 60.00623 * 5 4 3 31 31 H 1.08998 * 109.47367 * 180.02562 * 5 4 3 32 32 H 0.96704 * 113.99688 * 59.99607 * 6 4 3 33 33 H 1.09001 * 109.58485 * 6.62616 * 10 9 7 34 34 H 1.09006 * 109.58378 * 246.20408 * 10 9 7 35 35 H 1.08999 * 109.50084 * 294.68310 * 11 10 9 36 36 H 1.09001 * 109.49438 * 174.58706 * 11 10 9 37 37 H 1.09002 * 109.45743 * 58.65029 * 12 11 10 38 38 H 1.08990 * 109.45833 * 178.62463 * 12 11 10 39 39 H 0.97001 * 119.99847 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58839 * 113.79333 * 23 9 7 41 41 H 1.09001 * 109.58327 * 353.37697 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9790 0.3195 1.1808 6 8 3.9649 0.5795 -1.2218 7 6 4.1480 2.5560 0.1232 8 8 3.4845 3.4811 0.5413 9 7 5.4332 2.7544 -0.2309 10 6 6.0084 4.1064 -0.2349 11 6 7.2833 4.1024 0.6144 12 6 8.2301 3.0150 0.1011 13 6 7.5574 1.6468 0.2331 14 1 7.2990 1.4675 1.2768 15 6 8.5025 0.5736 -0.2424 16 1 8.2241 -0.0639 -1.0686 17 6 9.7227 0.4057 0.3772 18 7 10.0616 1.1817 1.3834 19 14 10.8946 -0.9241 -0.2128 20 1 10.2812 -1.6554 -1.3504 21 1 12.1687 -0.3013 -0.6533 22 1 11.1652 -1.8732 0.8969 23 6 6.2856 1.6229 -0.6205 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8462 -0.8901 29 1 3.6514 0.7810 2.1123 30 1 3.5359 -0.6724 1.0913 31 1 5.0656 0.2338 1.1807 32 1 3.7176 1.0751 -2.0146 33 1 5.2907 4.8101 0.1867 34 1 6.2511 4.3971 -1.2571 35 1 7.0270 3.9003 1.6544 36 1 7.7718 5.0741 0.5418 37 1 8.4663 3.2039 -0.9461 38 1 9.1482 3.0263 0.6882 39 1 10.9200 1.0632 1.8195 40 1 6.5509 1.7110 -1.6741 41 1 5.7507 0.6880 -0.4534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:35 Heat of formation + Delta-G solvation = -153.466144 kcal Electronic energy + Delta-G solvation = -22538.661618 eV Core-core repulsion = 19224.847095 eV Total energy + Delta-G solvation = -3313.814523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75220 -39.27979 -38.33663 -37.51966 -35.18251 -33.28423 -32.65543 -31.78531 -28.44139 -27.10458 -26.94471 -26.20365 -23.91394 -22.88026 -21.41156 -20.18152 -19.10678 -18.21120 -17.54482 -17.15274 -17.05867 -16.59473 -16.51621 -16.05760 -15.40704 -15.22996 -14.94110 -14.58196 -14.47876 -14.42748 -13.69856 -13.60695 -13.35973 -13.25769 -13.10365 -12.85862 -12.78461 -12.63595 -12.50567 -12.29910 -11.92755 -11.80962 -11.61660 -11.55591 -11.23083 -10.79163 -10.69076 -10.43876 -10.25160 -9.52136 -8.05982 -6.20364 1.37365 1.43552 1.46883 1.57312 1.86487 2.46337 2.79574 3.13763 3.21769 3.44373 3.75097 3.79510 4.14014 4.22043 4.32836 4.39371 4.45267 4.56629 4.57979 4.59182 4.60708 4.71694 4.79495 4.83483 4.87004 4.92513 5.03542 5.14275 5.19771 5.28190 5.44048 5.62578 5.66316 5.96194 6.12158 6.12581 6.34775 6.41468 6.61589 6.90937 7.04081 7.48319 8.98051 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.005650 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.131186 B = 4954.169072 C = 5844.513581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.061 3.939 4 C 0.132 3.868 5 C -0.137 4.137 6 O -0.538 6.538 7 C 0.490 3.510 8 O -0.578 6.578 9 N -0.591 5.591 10 C 0.112 3.888 11 C -0.124 4.124 12 C -0.107 4.107 13 C 0.036 3.964 14 H -0.010 1.010 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.285 1.285 23 C 0.119 3.881 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.390 0.610 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.259 0.741 40 H 0.064 0.936 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 1.159 -4.710 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C -0.016 4.016 4 C 0.088 3.912 5 C -0.195 4.195 6 O -0.345 6.345 7 C 0.278 3.722 8 O -0.460 6.460 9 N -0.321 5.321 10 C -0.010 4.010 11 C -0.162 4.162 12 C -0.146 4.146 13 C 0.017 3.983 14 H 0.008 0.992 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.183 4.183 18 N -0.556 5.556 19 Si 0.778 3.222 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.211 1.211 23 C -0.002 4.002 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.240 0.760 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.475 1.058 -3.989 15.052 hybrid contribution 0.710 0.119 -0.226 0.754 sum -13.766 1.176 -4.215 14.444 Atomic orbital electron populations 1.22974 0.79246 1.04053 1.00884 1.87882 1.21468 1.26686 1.95572 1.22741 0.91260 0.85298 1.02315 1.21136 0.92676 0.88868 0.88492 1.21770 1.02096 1.00900 0.94697 1.86677 1.80244 1.52603 1.15000 1.21497 0.82205 0.91092 0.77419 1.90627 1.62339 1.45137 1.47868 1.48346 1.10105 1.09486 1.64156 1.21694 0.95060 0.83368 1.00888 1.21872 0.95940 1.00023 0.98410 1.21465 0.99416 0.94636 0.99044 1.18946 0.91866 0.93729 0.93762 0.99154 1.21454 1.01640 1.16639 1.16795 0.92221 1.25677 0.99632 0.97984 0.94990 1.70031 1.22429 1.39745 1.23419 0.85596 0.78873 0.79376 0.78347 1.18829 1.20833 1.21107 1.22225 0.91238 0.88353 0.98417 0.93364 0.93002 0.88034 0.91692 0.91542 0.90674 0.89173 0.92325 0.76013 0.89797 0.89935 0.94371 0.90065 0.94318 0.92020 0.93174 0.91817 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -9.78 9.79 -144.34 -1.41 -11.20 16 3 C 0.06 1.56 4.62 71.98 0.33 1.89 16 4 C 0.13 3.92 0.75 -11.54 -0.01 3.91 16 5 C -0.14 -4.29 8.35 71.98 0.60 -3.69 16 6 O -0.54 -15.03 10.06 -144.34 -1.45 -16.48 16 7 C 0.49 16.81 6.62 87.66 0.58 17.39 16 8 O -0.58 -21.89 15.33 -3.02 -0.05 -21.93 16 9 N -0.59 -21.05 2.97 -818.89 -2.43 -23.48 16 10 C 0.11 3.75 6.44 86.36 0.56 4.31 16 11 C -0.12 -4.67 6.08 30.67 0.19 -4.48 16 12 C -0.11 -4.88 4.96 30.62 0.15 -4.73 16 13 C 0.04 1.73 2.25 -11.46 -0.03 1.71 16 14 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 15 C -0.53 -27.71 8.56 25.60 0.22 -27.49 16 16 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 17 C 0.02 0.85 5.30 84.66 0.45 1.30 16 18 N -0.92 -51.87 11.31 21.45 0.24 -51.63 16 19 Si 0.95 42.56 29.54 68.60 2.03 44.58 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 C 0.12 4.63 4.31 86.36 0.37 5.01 16 24 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.71 7.72 -2.39 -0.02 1.69 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.65 7.56 -2.38 -0.02 2.63 16 31 H 0.06 2.11 6.33 -2.39 -0.02 2.10 16 32 H 0.39 8.01 9.04 -74.05 -0.67 7.34 16 33 H 0.08 2.76 7.00 -2.39 -0.02 2.75 16 34 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 39 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.10 4.06 3.64 -2.39 -0.01 4.05 16 Total: -1.00 -63.11 322.54 1.94 -61.17 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.35 Total: 22.18 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 4.66 Total: -3.22 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -2.19 Total: -75.11 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -2.91 Total: -49.61 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -63.11 1.94 -61.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.294 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds