Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46824 * 2 1 4 4 C 1.53002 * 109.47055 * 240.00095 * 2 1 3 5 5 N 1.46497 * 109.47157 * 59.99781 * 4 2 1 6 6 C 1.34778 * 119.99885 * 179.97438 * 5 4 2 7 7 O 1.21684 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.46371 * 119.99991 * 179.97438 * 6 5 4 9 9 H 1.08002 * 120.00029 * 353.94620 * 8 6 5 10 10 C 1.40047 * 119.99962 * 173.94211 * 8 6 5 11 11 N 1.30667 * 120.00041 * 6.15248 * 10 8 6 12 12 Si 1.86803 * 119.99744 * 186.15547 * 10 8 6 13 13 H 1.48494 * 109.47272 * 94.98582 * 12 10 8 14 14 H 1.48508 * 109.46863 * 214.98300 * 12 10 8 15 15 H 1.48498 * 109.47181 * 334.97940 * 12 10 8 16 16 C 1.53003 * 109.47462 * 119.99730 * 2 1 3 17 17 O 1.42897 * 109.57118 * 180.15996 * 16 2 1 18 18 C 1.53182 * 109.52234 * 300.31508 * 16 2 1 19 19 C 1.53174 * 109.03576 * 176.88318 * 18 16 2 20 20 C 1.53088 * 109.16509 * 303.02182 * 19 18 16 21 21 O 1.42904 * 109.41520 * 57.60852 * 20 19 18 22 22 C 1.42904 * 114.09993 * 298.83981 * 21 20 19 23 23 H 1.09002 * 109.47125 * 299.99802 * 1 2 3 24 24 H 1.08995 * 109.47566 * 59.99982 * 1 2 3 25 25 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47247 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46847 * 300.00106 * 3 2 1 28 28 H 1.08996 * 109.47787 * 60.00207 * 3 2 1 29 29 H 1.09004 * 109.46674 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46763 * 299.99657 * 4 2 1 31 31 H 0.97003 * 120.00047 * 359.97438 * 5 4 2 32 32 H 0.97004 * 119.99646 * 180.02562 * 11 10 8 33 33 H 0.96705 * 113.99520 * 179.84344 * 17 16 2 34 34 H 1.09001 * 109.54161 * 296.75731 * 18 16 2 35 35 H 1.09005 * 109.53873 * 57.01683 * 18 16 2 36 36 H 1.08995 * 109.52052 * 183.11320 * 19 18 16 37 37 H 1.09003 * 109.52014 * 62.92494 * 19 18 16 38 38 H 1.08999 * 109.48229 * 297.62857 * 20 19 18 39 39 H 1.09004 * 109.47927 * 177.58761 * 20 19 18 40 40 H 1.09001 * 109.48087 * 301.18151 * 22 21 20 41 41 H 1.08998 * 109.49261 * 181.14625 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5516 -0.0307 -2.4454 6 6 1.8776 -0.4908 -3.6695 7 8 2.5772 -1.4802 -3.7812 8 6 1.3892 0.1988 -4.8646 9 1 0.6896 1.0159 -4.7686 10 6 1.8292 -0.2009 -6.1327 11 7 2.5797 -1.2630 -6.2591 12 14 1.3433 0.7846 -7.6434 13 1 2.4179 1.7571 -7.9668 14 1 1.1463 -0.1355 -8.7923 15 1 0.0794 1.5154 -7.3722 16 6 2.0401 -0.7212 1.2493 17 8 3.4690 -0.7191 1.2532 18 6 1.5237 -0.0046 2.5008 19 6 1.9754 -0.7795 3.7424 20 6 1.4683 -2.2208 3.6473 21 8 1.9598 -2.8190 2.4462 22 6 1.5305 -2.1648 1.2505 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 -0.7208 -1.2494 30 1 1.6766 -1.7489 -1.2492 31 1 0.9936 0.7578 -2.3564 32 1 2.8848 -1.5396 -7.1374 33 1 3.8608 -1.1589 2.0203 34 1 1.9284 1.0070 2.5348 35 1 0.4348 0.0378 2.4735 36 1 1.5659 -0.3074 4.6354 37 1 3.0642 -0.7792 3.7958 38 1 0.3784 -2.2226 3.6347 39 1 1.8231 -2.7884 4.5077 40 1 0.4413 -2.1658 1.2066 41 1 1.9297 -2.6920 0.3840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598388535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = -175.553556 kcal Electronic energy + Delta-G solvation = -22374.040527 eV Core-core repulsion = 19059.268223 eV Total energy + Delta-G solvation = -3314.772305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69764 -39.50268 -38.01689 -36.31899 -34.70490 -34.03190 -33.26193 -30.41268 -29.00963 -28.19342 -27.16533 -25.44564 -24.64949 -22.05140 -21.29500 -19.79409 -19.10210 -18.42918 -17.59450 -17.28136 -16.63093 -16.30342 -16.10845 -15.70790 -15.63625 -15.40868 -14.88035 -14.54756 -14.18511 -14.11071 -14.02143 -13.65649 -13.19488 -13.08608 -12.97340 -12.87752 -12.69895 -12.59970 -12.47324 -12.19106 -12.00614 -11.86741 -11.76775 -11.64249 -11.30130 -10.95375 -10.93144 -10.13536 -9.86122 -9.44230 -8.29351 -6.84759 1.39926 1.41772 1.57652 2.25068 2.48142 2.83397 3.09187 3.19723 3.54329 3.62089 3.74662 3.78788 3.98566 3.99576 4.09642 4.15618 4.30196 4.45547 4.52350 4.69813 4.72001 4.74996 4.83198 4.86002 4.91535 5.00488 5.00859 5.04778 5.09289 5.19840 5.28178 5.32286 5.38263 5.50094 5.88250 6.16711 6.25752 6.29027 6.81273 6.87047 7.57232 8.50628 8.68462 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.039436 B = 0.004244 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.837293 B = 6596.410096 C = 6859.789842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C -0.131 4.131 4 C 0.152 3.848 5 N -0.748 5.748 6 C 0.535 3.465 7 O -0.637 6.637 8 C -0.574 4.574 9 H 0.089 0.911 10 C 0.027 3.973 11 N -0.824 5.824 12 Si 1.000 3.000 13 H -0.264 1.264 14 H -0.273 1.273 15 H -0.246 1.246 16 C 0.120 3.880 17 O -0.565 6.565 18 C -0.146 4.146 19 C -0.154 4.154 20 C 0.046 3.954 21 O -0.399 6.399 22 C 0.032 3.968 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.020 0.980 30 H 0.026 0.974 31 H 0.394 0.606 32 H 0.274 0.726 33 H 0.382 0.618 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 5.621 20.622 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 C -0.189 4.189 4 C 0.027 3.973 5 N -0.403 5.403 6 C 0.339 3.661 7 O -0.524 6.524 8 C -0.610 4.610 9 H 0.107 0.893 10 C -0.188 4.188 11 N -0.454 5.454 12 Si 0.819 3.181 13 H -0.189 1.189 14 H -0.198 1.198 15 H -0.169 1.169 16 C 0.079 3.921 17 O -0.373 6.373 18 C -0.183 4.183 19 C -0.191 4.191 20 C -0.030 4.030 21 O -0.319 6.319 22 C -0.045 4.045 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.232 0.768 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.872 4.936 19.920 21.346 hybrid contribution 0.035 0.059 -0.450 0.455 sum -5.837 4.995 19.470 20.930 Atomic orbital electron populations 1.22041 0.91806 1.02689 1.03620 1.20646 0.96865 0.96289 0.91269 1.21777 1.00771 0.93834 1.02473 1.20883 0.96613 0.94575 0.85188 1.45806 1.56877 1.32999 1.04623 1.18688 0.80013 0.83726 0.83703 1.90550 1.44240 1.30388 1.87252 1.21430 1.29858 1.19269 0.90485 0.89287 1.27021 0.92757 0.94984 1.03997 1.70213 1.27640 1.22082 1.25427 0.84978 0.79865 0.77969 0.75257 1.18882 1.19771 1.16863 1.21655 0.81349 0.93955 0.95141 1.86576 1.19225 1.81144 1.50394 1.22374 1.02758 1.00317 0.92846 1.22227 1.02208 0.95746 0.98960 1.22926 0.99061 0.94115 0.86936 1.87960 1.74478 1.54928 1.14502 1.23401 1.00051 0.93558 0.87531 0.88900 0.92034 0.92470 0.93879 0.92838 0.89655 0.96159 0.95538 0.77096 0.91626 0.76846 0.89685 0.88914 0.87936 0.91101 0.92003 0.87165 0.90670 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 7.60 71.98 0.55 -2.78 16 2 C -0.05 -1.42 0.16 -52.18 -0.01 -1.43 16 3 C -0.13 -3.50 7.81 71.98 0.56 -2.94 16 4 C 0.15 6.41 4.07 86.38 0.35 6.76 16 5 N -0.75 -35.08 4.95 -467.41 -2.32 -37.39 16 6 C 0.53 32.44 7.74 86.36 0.67 33.10 16 7 O -0.64 -45.01 15.04 -4.30 -0.06 -45.07 16 8 C -0.57 -33.40 9.53 24.83 0.24 -33.17 16 9 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 10 C 0.03 1.56 5.49 85.30 0.47 2.02 16 11 N -0.82 -52.10 11.85 21.83 0.26 -51.84 16 12 Si 1.00 41.76 29.56 68.60 2.03 43.79 16 13 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 14 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 16 C 0.12 2.95 0.25 -10.70 0.00 2.95 16 17 O -0.57 -16.21 11.64 -141.82 -1.65 -17.86 16 18 C -0.15 -2.35 4.31 30.71 0.13 -2.22 16 19 C -0.15 -1.96 5.82 30.68 0.18 -1.79 16 20 C 0.05 0.69 6.84 72.01 0.49 1.18 16 21 O -0.40 -9.65 10.34 -141.82 -1.47 -11.12 16 22 C 0.03 0.83 5.09 72.01 0.37 1.20 16 23 H 0.09 1.48 6.36 -2.39 -0.02 1.46 16 24 H 0.06 1.52 6.86 -2.39 -0.02 1.50 16 25 H 0.06 1.34 6.38 -2.39 -0.02 1.33 16 26 H 0.04 1.33 7.68 -2.39 -0.02 1.31 16 27 H 0.05 1.48 6.86 -2.38 -0.02 1.46 16 28 H 0.08 1.67 6.52 -2.39 -0.02 1.66 16 29 H 0.02 0.99 7.69 -2.39 -0.02 0.98 16 30 H 0.03 1.20 6.49 -2.39 -0.02 1.19 16 31 H 0.39 15.76 6.14 -92.71 -0.57 15.19 16 32 H 0.27 15.65 8.29 -92.71 -0.77 14.88 16 33 H 0.38 8.74 7.06 -74.05 -0.52 8.22 16 34 H 0.08 1.33 6.63 -2.39 -0.02 1.32 16 35 H 0.09 1.23 6.28 -2.38 -0.01 1.21 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.95 6.94 -2.39 -0.02 0.93 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.08 1.73 6.31 -2.39 -0.02 1.72 16 41 H 0.07 2.42 6.57 -2.39 -0.02 2.40 16 Total: -1.00 -81.99 310.79 0.75 -81.24 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.03 Total: 35.37 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 3.99 Total: 2.90 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -2.06 Total: -89.24 kcal Atomic # 8 Polarization: -70.88 SS G_CDS: -3.18 Total: -74.06 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -81.99 0.75 -81.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598388535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.313 kcal (2) G-P(sol) polarization free energy of solvation -81.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds