Wall clock time and date at job start Mon Mar 30 2020 02:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00278 * 2 1 4 4 C 1.53001 * 109.47651 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47692 * 184.99561 * 4 3 2 6 6 N 1.46901 * 109.46951 * 304.99810 * 4 3 2 7 7 C 1.46894 * 110.99930 * 302.91838 * 6 4 3 8 8 C 1.53006 * 109.46855 * 179.97438 * 7 6 4 9 9 C 1.50703 * 115.54773 * 185.16947 * 8 7 6 10 10 H 1.07998 * 119.99815 * 144.31862 * 9 8 7 11 11 C 1.37881 * 120.00100 * 324.31698 * 9 8 7 12 12 N 1.31516 * 119.99974 * 3.69645 * 11 9 8 13 13 Si 1.86800 * 120.00081 * 183.69046 * 11 9 8 14 14 H 1.48497 * 109.46974 * 60.00008 * 13 11 9 15 15 H 1.48496 * 109.47039 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47023 * 300.00101 * 13 11 9 17 17 C 1.53001 * 117.49988 * 39.50149 * 8 7 6 18 18 C 1.52996 * 117.50058 * 330.83836 * 8 7 6 19 19 C 1.50709 * 109.46775 * 64.99313 * 4 3 2 20 20 O 1.20818 * 120.00002 * 27.94551 * 19 4 3 21 21 O 1.34228 * 119.99716 * 207.94050 * 19 4 3 22 22 C 1.45205 * 116.99782 * 180.02562 * 21 19 4 23 23 H 1.08998 * 109.47149 * 300.00462 * 1 2 3 24 24 H 1.09005 * 109.46904 * 60.00248 * 1 2 3 25 25 H 1.08997 * 109.46950 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47579 * 59.99609 * 3 2 1 27 27 H 1.08999 * 109.46875 * 299.99691 * 3 2 1 28 28 H 1.08992 * 109.47366 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47396 * 300.00358 * 5 4 3 30 30 H 1.09004 * 109.46404 * 59.99821 * 5 4 3 31 31 H 1.00903 * 110.99703 * 66.87258 * 6 4 3 32 32 H 1.09000 * 109.46771 * 299.95329 * 7 6 4 33 33 H 1.08998 * 109.47571 * 59.95540 * 7 6 4 34 34 H 0.97001 * 120.00097 * 185.00616 * 12 11 9 35 35 H 1.08993 * 117.49905 * 359.97438 * 17 8 7 36 36 H 1.09000 * 117.49713 * 145.01961 * 17 8 7 37 37 H 1.08997 * 117.49953 * 214.98352 * 18 8 7 38 38 H 1.08997 * 117.49758 * 359.97438 * 18 8 7 39 39 H 1.08999 * 109.47236 * 59.99877 * 22 21 19 40 40 H 1.08995 * 109.46934 * 179.97438 * 22 21 19 41 41 H 1.09003 * 109.46850 * 299.99996 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1574 2.5769 0.1262 6 7 3.9605 0.3543 1.1355 7 6 3.4751 0.9105 2.4055 8 6 3.9360 0.0202 3.5614 9 6 3.4105 0.3980 4.9223 10 1 3.1702 -0.3714 5.6411 11 6 3.2365 1.7260 5.2499 12 7 3.4596 2.6597 4.3509 13 14 2.6836 2.1990 6.9703 14 1 3.6773 1.7124 7.9608 15 1 2.5717 3.6767 7.0656 16 1 1.3617 1.5838 7.2521 17 6 5.3498 -0.5598 3.4861 18 6 4.1369 -1.4683 3.2700 19 6 3.9893 0.5460 -1.2868 20 8 3.3275 0.6719 -2.2897 21 8 5.1289 -0.1625 -1.3192 22 6 5.5046 -0.7488 -2.5933 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 5.2439 2.4908 0.1272 29 1 3.8421 3.1930 -0.7158 30 1 3.8290 3.0387 1.0574 31 1 3.6559 -0.6005 1.0190 32 1 3.8760 1.9152 2.5390 33 1 2.3860 0.9528 2.3911 34 1 3.4080 3.5956 4.6006 35 1 5.9514 -0.3075 2.6129 36 1 5.8997 -0.6685 4.4209 37 1 3.8893 -2.1742 4.0627 38 1 3.9403 -1.8134 2.2549 39 1 5.6297 0.0410 -3.3340 40 1 6.4425 -1.2925 -2.4806 41 1 4.7238 -1.4347 -2.9220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602797289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:37 Heat of formation + Delta-G solvation = -109.714646 kcal Electronic energy + Delta-G solvation = -22650.341696 eV Core-core repulsion = 19338.424381 eV Total energy + Delta-G solvation = -3311.917315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82718 -39.70025 -38.48774 -37.44610 -36.40748 -34.16125 -31.30666 -28.88840 -28.59949 -27.81971 -26.59308 -26.12303 -23.93793 -22.82674 -21.05062 -20.20431 -19.14113 -18.19619 -17.62473 -17.53104 -17.18228 -16.72418 -16.64166 -16.49405 -15.49417 -15.37155 -14.79916 -14.52980 -14.29986 -14.10791 -13.69393 -13.34975 -13.16901 -13.04557 -12.92952 -12.86442 -12.77363 -12.63608 -12.37840 -12.33275 -12.24707 -11.88383 -11.73026 -11.36590 -11.18542 -10.77437 -10.68943 -10.50712 -9.97321 -9.16612 -7.98493 -6.14358 1.11075 1.46285 1.47245 1.54661 1.75118 2.45071 2.59023 3.08360 3.29863 3.67675 3.77093 3.87706 4.09434 4.31348 4.32452 4.35088 4.36503 4.46893 4.50960 4.52940 4.66857 4.71747 4.74864 4.76050 4.80423 4.85948 5.03090 5.17604 5.21609 5.34477 5.38467 5.51104 5.64747 5.74479 6.01747 6.11900 6.25143 6.51164 6.54112 6.77873 6.92058 7.48627 8.96385 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.006075 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.226579 B = 4607.727790 C = 4990.280676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.410 6.410 3 C 0.045 3.955 4 C 0.129 3.871 5 C -0.133 4.133 6 N -0.662 5.662 7 C 0.121 3.879 8 C 0.021 3.979 9 C -0.512 4.512 10 H 0.048 0.952 11 C 0.030 3.970 12 N -0.899 5.899 13 Si 0.954 3.046 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.276 1.276 17 C -0.185 4.185 18 C -0.197 4.197 19 C 0.488 3.512 20 O -0.531 6.531 21 O -0.347 6.347 22 C 0.025 3.975 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.335 0.665 32 H 0.113 0.887 33 H -0.002 1.002 34 H 0.263 0.737 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 -1.734 -11.329 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.329 6.329 3 C -0.033 4.033 4 C 0.035 3.965 5 C -0.190 4.190 6 N -0.295 5.295 7 C -0.006 4.006 8 C 0.020 3.980 9 C -0.549 4.549 10 H 0.066 0.934 11 C -0.170 4.170 12 N -0.537 5.537 13 Si 0.779 3.221 14 H -0.202 1.202 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.223 4.223 18 C -0.235 4.235 19 C 0.331 3.669 20 O -0.420 6.420 21 O -0.262 6.262 22 C -0.068 4.068 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.016 0.984 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.147 0.853 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.097 -1.384 -11.647 11.730 hybrid contribution -1.454 0.030 0.796 1.658 sum -1.357 -1.354 -10.852 11.020 Atomic orbital electron populations 1.22871 0.79211 1.03859 1.00484 1.87753 1.21883 1.27716 1.95548 1.23102 0.92990 0.85700 1.01529 1.20864 0.91883 0.96324 0.87401 1.21800 1.02134 0.91325 1.03777 1.61007 1.62476 1.05088 1.00969 1.21602 0.94563 1.00442 0.84020 1.19194 0.94912 0.89793 0.94105 1.20854 1.43527 0.92239 0.98325 0.93396 1.25591 0.94677 0.96351 1.00405 1.69865 1.50013 1.00368 1.33445 0.85692 0.78619 0.77100 0.80641 1.20204 1.20491 1.20160 1.22821 0.92387 1.06988 1.00097 1.22821 1.05521 0.95234 0.99894 1.23530 0.78286 0.74956 0.90136 1.90589 1.55558 1.59003 1.36853 1.86645 1.39509 1.61777 1.38277 1.23571 1.02350 0.98339 0.82550 0.94021 0.92858 0.88205 0.91869 0.91485 0.90288 0.90150 0.90400 0.84562 0.86913 0.98408 0.92693 0.89598 0.92219 0.91445 0.89823 0.91562 0.85292 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.41 -14.29 9.84 -148.98 -1.47 -15.76 16 3 C 0.05 1.54 3.86 71.98 0.28 1.82 16 4 C 0.13 4.45 0.74 2.78 0.00 4.46 16 5 C -0.13 -4.17 8.30 71.98 0.60 -3.58 16 6 N -0.66 -25.83 4.81 -473.89 -2.28 -28.11 16 7 C 0.12 5.54 4.00 86.31 0.35 5.89 16 8 C 0.02 1.02 2.45 -52.93 -0.13 0.89 16 9 C -0.51 -27.73 9.06 25.60 0.23 -27.49 16 10 H 0.05 2.62 7.82 -2.91 -0.02 2.59 16 11 C 0.03 1.57 5.39 84.66 0.46 2.03 16 12 N -0.90 -47.28 10.31 21.45 0.22 -47.06 16 13 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 C -0.19 -8.43 9.65 30.62 0.30 -8.14 16 18 C -0.20 -8.62 9.57 30.62 0.29 -8.33 16 19 C 0.49 16.52 6.47 71.24 0.46 16.98 16 20 O -0.53 -19.10 15.78 21.99 0.35 -18.75 16 21 O -0.35 -10.80 10.23 -51.40 -0.53 -11.33 16 22 C 0.02 0.55 10.56 113.37 1.20 1.74 16 23 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.06 2.28 6.65 -2.39 -0.02 2.27 16 27 H 0.07 2.11 7.68 -2.39 -0.02 2.09 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.70 6.47 -2.38 -0.02 2.68 16 31 H 0.33 13.37 5.99 -89.69 -0.54 12.84 16 32 H 0.11 5.57 4.12 -2.39 -0.01 5.56 16 33 H 0.00 -0.11 6.36 -2.39 -0.02 -0.13 16 34 H 0.26 13.19 8.32 -92.71 -0.77 12.42 16 35 H 0.09 3.77 7.76 -2.39 -0.02 3.75 16 36 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.08 3.38 6.21 -2.39 -0.01 3.36 16 39 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 40 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 Total: -1.00 -59.81 331.65 4.09 -55.72 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.49 Total: 32.93 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 5.28 Total: -11.63 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -2.06 Total: -75.17 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.64 Total: -45.83 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -59.81 4.09 -55.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602797289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.992 kcal (2) G-P(sol) polarization free energy of solvation -59.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds