Wall clock time and date at job start Mon Mar 30 2020 02:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99857 * 2 1 4 4 C 1.53005 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46888 * 180.02562 * 4 3 2 6 6 N 1.46894 * 109.46917 * 60.00024 * 4 3 2 7 7 C 1.46901 * 111.00335 * 64.92731 * 6 4 3 8 8 C 1.53000 * 109.47611 * 185.33339 * 7 6 4 9 9 C 1.50703 * 115.54968 * 269.64251 * 8 7 6 10 10 H 1.07997 * 120.00203 * 95.13001 * 9 8 7 11 11 C 1.37877 * 119.99282 * 275.13833 * 9 8 7 12 12 N 1.31512 * 120.00408 * 5.25205 * 11 9 8 13 13 Si 1.86801 * 119.99464 * 185.25750 * 11 9 8 14 14 H 1.48500 * 109.47495 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47036 * 119.99459 * 13 11 9 16 16 H 1.48501 * 109.47362 * 239.99686 * 13 11 9 17 17 C 1.53001 * 117.50049 * 123.92799 * 8 7 6 18 18 C 1.53003 * 117.49610 * 55.30500 * 8 7 6 19 19 C 1.50700 * 109.46989 * 299.99946 * 4 3 2 20 20 O 1.20818 * 119.99800 * 265.85547 * 19 4 3 21 21 O 1.34233 * 119.99779 * 85.85519 * 19 4 3 22 22 C 1.45203 * 116.99629 * 179.97438 * 21 19 4 23 23 H 1.09001 * 109.46820 * 60.00366 * 1 2 3 24 24 H 1.08998 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47354 * 299.99829 * 1 2 3 26 26 H 1.09000 * 109.47410 * 59.99927 * 3 2 1 27 27 H 1.08998 * 109.47044 * 300.00063 * 3 2 1 28 28 H 1.09002 * 109.46551 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.47188 * 60.00400 * 5 4 3 30 30 H 1.08998 * 109.47144 * 300.00037 * 5 4 3 31 31 H 1.00903 * 110.99779 * 188.88031 * 6 4 3 32 32 H 1.09007 * 109.47155 * 305.33233 * 7 6 4 33 33 H 1.09002 * 109.47100 * 65.33129 * 7 6 4 34 34 H 0.97000 * 119.99799 * 184.99901 * 12 11 9 35 35 H 1.09002 * 117.49948 * 0.02562 * 17 8 7 36 36 H 1.09001 * 117.49571 * 145.02213 * 17 8 7 37 37 H 1.08999 * 117.49702 * 214.97789 * 18 8 7 38 38 H 1.08996 * 117.50186 * 359.97438 * 18 8 7 39 39 H 1.09001 * 109.46499 * 180.02562 * 22 21 19 40 40 H 1.09003 * 109.47109 * 300.00066 * 22 21 19 41 41 H 1.09001 * 109.47156 * 60.00200 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 7 3.9694 0.4556 -1.1984 7 6 3.6563 1.2131 -2.4175 8 6 3.9999 0.3680 -3.6457 9 6 5.4014 0.5308 -4.1753 10 1 6.1772 -0.1557 -3.8700 11 6 5.6931 1.5564 -5.0495 12 7 4.7762 2.4530 -5.3408 13 14 7.3907 1.6721 -5.8202 14 1 8.2334 0.5507 -5.3325 15 1 7.2697 1.5943 -7.2983 16 1 8.0191 2.9634 -5.4422 17 6 2.8852 0.1131 -4.6622 18 6 3.3620 -1.0188 -3.7499 19 6 3.9797 0.4371 1.2314 20 8 4.3009 1.0454 2.2246 21 8 4.0184 -0.9046 1.2242 22 6 4.4567 -1.5580 2.4446 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 5.2443 2.4964 0.0013 29 1 3.8357 3.1231 0.8913 30 1 3.8364 3.1236 -0.8887 31 1 4.9531 0.2360 -1.1519 32 1 2.5941 1.4579 -2.4304 33 1 4.2412 2.1328 -2.4340 34 1 4.9568 3.1316 -6.0099 35 1 1.9071 0.5479 -4.4562 36 1 3.1654 0.0634 -5.7145 37 1 3.9558 -1.8132 -4.2019 38 1 2.6979 -1.3292 -2.9432 39 1 4.4420 -2.6387 2.3035 40 1 5.4703 -1.2370 2.6847 41 1 3.7872 -1.2887 3.2615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602797290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:40 Heat of formation + Delta-G solvation = -96.428155 kcal Electronic energy + Delta-G solvation = -22431.847984 eV Core-core repulsion = 19120.506814 eV Total energy + Delta-G solvation = -3311.341170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50778 -38.17099 -36.82113 -36.28685 -35.09756 -31.89882 -29.99249 -27.86693 -27.40817 -25.84424 -25.14751 -24.87860 -22.53056 -20.88265 -19.54199 -18.97995 -17.53628 -16.72707 -16.33575 -16.11492 -15.79032 -15.30285 -14.83583 -14.55119 -14.10809 -13.87146 -13.53629 -13.16120 -13.12303 -12.63219 -12.43749 -12.26789 -12.00956 -11.73773 -11.50949 -11.31759 -11.12392 -11.05812 -10.93884 -10.79611 -10.53441 -10.41455 -10.13914 -9.96199 -9.46273 -9.39528 -8.67221 -8.38145 -7.99983 -7.64988 -6.02565 -4.08527 2.38804 2.95545 3.27718 3.36911 3.40976 3.82398 4.41756 4.52521 4.88690 5.00703 5.23181 5.25007 5.28648 5.30081 5.37097 5.46807 5.50225 5.57961 5.61940 5.65690 5.77924 5.85119 5.95396 6.18789 6.26001 6.53380 6.59315 6.65655 6.80029 6.92353 7.04865 7.24590 7.30609 7.54681 7.62516 7.76501 7.88538 7.95183 8.12961 8.52135 8.96108 9.58084 11.05986 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.005962 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.594482 B = 4695.153981 C = 5198.748523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.078 3.922 4 C 0.126 3.874 5 C -0.172 4.172 6 N -0.651 5.651 7 C 0.103 3.897 8 C 0.045 3.955 9 C -0.494 4.494 10 H 0.059 0.941 11 C 0.071 3.929 12 N -0.879 5.879 13 Si 0.884 3.116 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.286 1.286 17 C -0.160 4.160 18 C -0.189 4.189 19 C 0.485 3.515 20 O -0.522 6.522 21 O -0.321 6.321 22 C 0.032 3.968 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.347 0.653 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.258 0.742 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 -2.882 11.675 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.000 4.000 4 C 0.033 3.967 5 C -0.231 4.231 6 N -0.283 5.283 7 C -0.025 4.025 8 C 0.044 3.956 9 C -0.531 4.531 10 H 0.077 0.923 11 C -0.132 4.132 12 N -0.516 5.516 13 Si 0.712 3.288 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.212 1.212 17 C -0.198 4.198 18 C -0.227 4.227 19 C 0.327 3.673 20 O -0.411 6.411 21 O -0.236 6.236 22 C -0.062 4.062 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.124 -3.089 11.900 13.735 hybrid contribution 1.375 1.108 -0.351 1.800 sum -4.749 -1.981 11.549 12.643 Atomic orbital electron populations 1.22721 0.81901 1.02582 0.99431 1.88092 1.18551 1.26030 1.95182 1.22509 0.90608 0.86026 1.00842 1.20805 0.95076 0.91936 0.88903 1.22400 1.01890 0.95235 1.03622 1.60716 1.24180 1.44210 0.99219 1.21720 0.97911 0.95275 0.87570 1.18707 0.92917 0.91984 0.91994 1.20585 0.93179 1.11993 1.27392 0.92288 1.24967 0.96647 0.94938 0.96655 1.70025 1.33978 1.15760 1.31864 0.86674 0.85039 0.77861 0.79257 1.19727 1.21023 1.21187 1.22518 0.97462 1.03047 0.96739 1.22806 1.04766 0.93082 1.02039 1.23558 0.72971 0.81481 0.89251 1.90620 1.45702 1.69441 1.35323 1.86727 1.77228 1.20867 1.38728 1.23233 0.99677 0.97668 0.85656 0.94083 0.89697 0.94867 0.93225 0.91214 0.91240 0.91325 0.89829 0.83423 0.93583 0.93970 0.93219 0.92366 0.90574 0.91288 0.90550 0.88297 0.92380 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.36 -5.76 10.13 -35.23 -0.36 -6.11 16 3 C 0.08 1.18 4.59 37.16 0.17 1.35 16 4 C 0.13 2.08 0.72 -132.75 -0.10 1.99 16 5 C -0.17 -2.66 7.62 37.16 0.28 -2.37 16 6 N -0.65 -12.21 5.49 -101.13 -0.56 -12.77 16 7 C 0.10 2.18 4.80 -3.82 -0.02 2.16 16 8 C 0.04 1.07 1.59 -155.66 -0.25 0.82 16 9 C -0.49 -13.06 8.77 -34.44 -0.30 -13.36 16 10 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 11 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 12 N -0.88 -24.25 12.91 55.43 0.72 -23.54 16 13 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 C -0.16 -3.75 9.37 -26.73 -0.25 -4.00 16 18 C -0.19 -4.21 9.73 -26.73 -0.26 -4.47 16 19 C 0.48 8.20 6.35 36.01 0.23 8.43 16 20 O -0.52 -9.38 15.85 -18.74 -0.30 -9.68 16 21 O -0.32 -5.23 10.19 -39.30 -0.40 -5.63 16 22 C 0.03 0.38 10.56 101.05 1.07 1.45 16 23 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.05 6.41 -51.93 -0.33 0.72 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 30 H 0.08 1.31 6.46 -51.93 -0.34 0.97 16 31 H 0.35 6.73 8.71 -39.29 -0.34 6.39 16 32 H 0.05 0.95 5.93 -51.92 -0.31 0.65 16 33 H 0.04 0.96 6.45 -51.93 -0.33 0.63 16 34 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.06 1.29 8.03 -51.93 -0.42 0.88 16 36 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -29.66 341.50 -5.85 -35.52 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.67 Total: 6.07 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 1.59 Total: -4.75 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.16 Total: -36.31 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.05 Total: -21.42 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.66 -5.85 -35.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602797290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.911 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds