Wall clock time and date at job start Mon Mar 30 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99857 * 2 1 4 4 C 1.53005 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46888 * 180.02562 * 4 3 2 6 6 N 1.46894 * 109.46917 * 60.00024 * 4 3 2 7 7 C 1.46901 * 111.00335 * 64.92731 * 6 4 3 8 8 C 1.53000 * 109.47611 * 185.33339 * 7 6 4 9 9 C 1.50703 * 115.54968 * 269.64251 * 8 7 6 10 10 H 1.07997 * 120.00203 * 95.13001 * 9 8 7 11 11 C 1.37877 * 119.99282 * 275.13833 * 9 8 7 12 12 N 1.31512 * 120.00408 * 5.25205 * 11 9 8 13 13 Si 1.86801 * 119.99464 * 185.25750 * 11 9 8 14 14 H 1.48500 * 109.47495 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47036 * 119.99459 * 13 11 9 16 16 H 1.48501 * 109.47362 * 239.99686 * 13 11 9 17 17 C 1.53001 * 117.50049 * 123.92799 * 8 7 6 18 18 C 1.53003 * 117.49610 * 55.30500 * 8 7 6 19 19 C 1.50700 * 109.46989 * 299.99946 * 4 3 2 20 20 O 1.20818 * 119.99800 * 265.85547 * 19 4 3 21 21 O 1.34233 * 119.99779 * 85.85519 * 19 4 3 22 22 C 1.45203 * 116.99629 * 179.97438 * 21 19 4 23 23 H 1.09001 * 109.46820 * 60.00366 * 1 2 3 24 24 H 1.08998 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47354 * 299.99829 * 1 2 3 26 26 H 1.09000 * 109.47410 * 59.99927 * 3 2 1 27 27 H 1.08998 * 109.47044 * 300.00063 * 3 2 1 28 28 H 1.09002 * 109.46551 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.47188 * 60.00400 * 5 4 3 30 30 H 1.08998 * 109.47144 * 300.00037 * 5 4 3 31 31 H 1.00903 * 110.99779 * 188.88031 * 6 4 3 32 32 H 1.09007 * 109.47155 * 305.33233 * 7 6 4 33 33 H 1.09002 * 109.47100 * 65.33129 * 7 6 4 34 34 H 0.97000 * 119.99799 * 184.99901 * 12 11 9 35 35 H 1.09002 * 117.49948 * 0.02562 * 17 8 7 36 36 H 1.09001 * 117.49571 * 145.02213 * 17 8 7 37 37 H 1.08999 * 117.49702 * 214.97789 * 18 8 7 38 38 H 1.08996 * 117.50186 * 359.97438 * 18 8 7 39 39 H 1.09001 * 109.46499 * 180.02562 * 22 21 19 40 40 H 1.09003 * 109.47109 * 300.00066 * 22 21 19 41 41 H 1.09001 * 109.47156 * 60.00200 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 7 3.9694 0.4556 -1.1984 7 6 3.6563 1.2131 -2.4175 8 6 3.9999 0.3680 -3.6457 9 6 5.4014 0.5308 -4.1753 10 1 6.1772 -0.1557 -3.8700 11 6 5.6931 1.5564 -5.0495 12 7 4.7762 2.4530 -5.3408 13 14 7.3907 1.6721 -5.8202 14 1 8.2334 0.5507 -5.3325 15 1 7.2697 1.5943 -7.2983 16 1 8.0191 2.9634 -5.4422 17 6 2.8852 0.1131 -4.6622 18 6 3.3620 -1.0188 -3.7499 19 6 3.9797 0.4371 1.2314 20 8 4.3009 1.0454 2.2246 21 8 4.0184 -0.9046 1.2242 22 6 4.4567 -1.5580 2.4446 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 5.2443 2.4964 0.0013 29 1 3.8357 3.1231 0.8913 30 1 3.8364 3.1236 -0.8887 31 1 4.9531 0.2360 -1.1519 32 1 2.5941 1.4579 -2.4304 33 1 4.2412 2.1328 -2.4340 34 1 4.9568 3.1316 -6.0099 35 1 1.9071 0.5479 -4.4562 36 1 3.1654 0.0634 -5.7145 37 1 3.9558 -1.8132 -4.2019 38 1 2.6979 -1.3292 -2.9432 39 1 4.4420 -2.6387 2.3035 40 1 5.4703 -1.2370 2.6847 41 1 3.7872 -1.2887 3.2615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602797290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:39 Heat of formation + Delta-G solvation = -115.224626 kcal Electronic energy + Delta-G solvation = -22432.663060 eV Core-core repulsion = 19120.506814 eV Total energy + Delta-G solvation = -3312.156246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78983 -39.49634 -38.34077 -37.56353 -36.57814 -33.92854 -31.44591 -28.94281 -28.46661 -27.72540 -26.54228 -26.17804 -23.92601 -22.73851 -20.99188 -20.64203 -18.89224 -18.12887 -17.60279 -17.55969 -17.23607 -16.60499 -16.40345 -15.97990 -15.60600 -15.51621 -14.80958 -14.48699 -14.38409 -14.27166 -13.72749 -13.44639 -13.39367 -13.23666 -12.91666 -12.83701 -12.78041 -12.61418 -12.45687 -12.29397 -12.13189 -11.88282 -11.68523 -11.39096 -11.25818 -10.64128 -10.52386 -10.34944 -9.85011 -9.20234 -8.06639 -6.17151 1.08931 1.40674 1.45181 1.54397 1.78565 2.45921 2.69774 3.09284 3.23510 3.69326 3.73643 3.83527 4.06767 4.26766 4.33035 4.35636 4.36996 4.45609 4.54624 4.59596 4.62216 4.67068 4.73299 4.75257 4.82456 4.90976 4.98458 5.08976 5.13861 5.19919 5.37802 5.39214 5.74938 5.78672 5.85626 6.11772 6.27399 6.39726 6.52561 6.79455 6.93397 7.51506 9.01399 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.005962 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.594482 B = 4695.153981 C = 5198.748523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.386 6.386 3 C 0.079 3.921 4 C 0.123 3.877 5 C -0.166 4.166 6 N -0.648 5.648 7 C 0.123 3.877 8 C 0.025 3.975 9 C -0.507 4.507 10 H 0.050 0.950 11 C 0.030 3.970 12 N -0.904 5.904 13 Si 0.940 3.060 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.163 4.163 18 C -0.167 4.167 19 C 0.487 3.513 20 O -0.536 6.536 21 O -0.337 6.337 22 C 0.025 3.975 23 H 0.043 0.957 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.341 0.659 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.060 0.940 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.098 -3.339 12.631 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.305 6.305 3 C 0.002 3.998 4 C 0.030 3.970 5 C -0.225 4.225 6 N -0.280 5.280 7 C -0.005 4.005 8 C 0.024 3.976 9 C -0.545 4.545 10 H 0.068 0.932 11 C -0.171 4.171 12 N -0.542 5.542 13 Si 0.767 3.233 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.201 4.201 18 C -0.204 4.204 19 C 0.331 3.669 20 O -0.427 6.427 21 O -0.251 6.251 22 C -0.068 4.068 23 H 0.062 0.938 24 H 0.115 0.885 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.466 -3.565 12.865 14.833 hybrid contribution 1.454 1.173 -0.591 1.960 sum -5.013 -2.391 12.274 13.472 Atomic orbital electron populations 1.22915 0.79985 1.03760 1.00457 1.88044 1.20713 1.26326 1.95391 1.22500 0.89447 0.86185 1.01674 1.20926 0.96304 0.92050 0.87765 1.22327 1.01304 0.94838 1.04068 1.60624 1.23709 1.44310 0.99334 1.21339 0.97606 0.93913 0.87638 1.18855 0.92041 0.93573 0.93115 1.20818 0.94294 1.11749 1.27621 0.93213 1.25559 0.99577 0.94750 0.97180 1.70106 1.35509 1.16216 1.32352 0.85786 0.81457 0.77745 0.78305 1.19474 1.20916 1.20956 1.22439 0.97926 1.04206 0.95575 1.22711 1.04017 0.92221 1.01500 1.23498 0.72608 0.81829 0.88984 1.90608 1.46481 1.69763 1.35802 1.86695 1.77141 1.20456 1.40771 1.23546 0.99866 0.98926 0.84474 0.93787 0.88528 0.93070 0.91332 0.91354 0.92045 0.89841 0.90315 0.84105 0.93099 0.96165 0.93255 0.91226 0.92790 0.91559 0.89349 0.85571 0.92091 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.79 16 2 O -0.39 -11.59 10.13 -148.98 -1.51 -13.10 16 3 C 0.08 2.27 4.59 71.98 0.33 2.60 16 4 C 0.12 3.92 0.72 2.78 0.00 3.92 16 5 C -0.17 -5.01 7.62 71.98 0.55 -4.46 16 6 N -0.65 -23.92 5.49 -473.88 -2.60 -26.52 16 7 C 0.12 5.19 4.80 86.30 0.41 5.61 16 8 C 0.02 1.19 1.59 -52.93 -0.08 1.10 16 9 C -0.51 -26.90 8.77 25.60 0.22 -26.68 16 10 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 11 C 0.03 1.58 5.40 84.66 0.46 2.04 16 12 N -0.90 -50.08 12.91 21.45 0.28 -49.80 16 13 Si 0.94 42.68 29.54 68.60 2.03 44.71 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 C -0.16 -7.64 9.37 30.60 0.29 -7.35 16 18 C -0.17 -7.28 9.73 30.60 0.30 -6.98 16 19 C 0.49 15.87 6.35 71.24 0.45 16.33 16 20 O -0.54 -18.55 15.85 21.99 0.35 -18.20 16 21 O -0.34 -10.44 10.19 -51.41 -0.52 -10.97 16 22 C 0.03 0.56 10.56 113.37 1.20 1.75 16 23 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.96 6.41 -2.39 -0.02 1.94 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 2.24 7.87 -2.39 -0.02 2.22 16 30 H 0.08 2.43 6.46 -2.39 -0.02 2.42 16 31 H 0.34 13.18 8.71 -89.69 -0.78 12.40 16 32 H 0.05 2.07 5.93 -2.38 -0.01 2.06 16 33 H 0.02 0.93 6.45 -2.39 -0.02 0.92 16 34 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 35 H 0.07 3.05 8.03 -2.39 -0.02 3.03 16 36 H 0.05 2.73 8.14 -2.39 -0.02 2.72 16 37 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 41 H 0.06 1.31 8.13 -2.39 -0.02 1.30 16 Total: -1.00 -61.60 341.50 3.62 -57.97 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.23 Total: 26.24 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 5.37 Total: -10.34 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.33 Total: -76.32 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -1.68 Total: -42.27 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -61.60 3.62 -57.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602797290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.250 kcal (2) G-P(sol) polarization free energy of solvation -61.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds