Wall clock time and date at job start Mon Mar 30 2020 01:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47087 * 2 1 4 4 C 1.52995 * 109.47371 * 239.99528 * 2 1 3 5 5 H 1.08999 * 109.47348 * 175.80531 * 4 2 1 6 6 N 1.46907 * 109.47143 * 295.80374 * 4 2 1 7 7 C 1.46896 * 111.00088 * 274.54555 * 6 4 2 8 8 C 1.53178 * 109.54351 * 272.43741 * 7 6 4 9 9 C 1.53099 * 109.15954 * 183.24221 * 8 7 6 10 10 O 1.42900 * 109.48856 * 57.46946 * 9 8 7 11 11 C 1.42901 * 114.09767 * 298.89332 * 10 9 8 12 12 C 1.53090 * 109.41599 * 61.15771 * 11 10 9 13 13 C 1.50701 * 109.46852 * 55.80044 * 4 2 1 14 14 O 1.21209 * 120.00137 * 239.99497 * 13 4 2 15 15 O 1.34313 * 119.99869 * 60.00742 * 13 4 2 16 16 C 1.34919 * 117.00029 * 179.97438 * 15 13 4 17 17 H 1.07998 * 120.00147 * 359.97438 * 16 15 13 18 18 C 1.38749 * 120.00179 * 179.97438 * 16 15 13 19 19 N 1.31444 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00193 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47044 * 60.00187 * 20 18 16 22 22 H 1.48498 * 109.47070 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47043 * 299.99990 * 20 18 16 24 24 H 1.09008 * 109.46924 * 60.00407 * 1 2 3 25 25 H 1.09001 * 109.47213 * 300.00993 * 1 2 3 26 26 H 1.09001 * 109.47431 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46891 * 119.99287 * 2 1 3 28 28 H 1.08997 * 109.47560 * 66.94494 * 3 2 1 29 29 H 1.09001 * 109.47003 * 186.94447 * 3 2 1 30 30 H 1.09006 * 109.47197 * 306.94511 * 3 2 1 31 31 H 1.00902 * 111.00181 * 150.58733 * 6 4 2 32 32 H 1.09004 * 109.54526 * 32.60797 * 7 6 4 33 33 H 1.09006 * 109.52105 * 303.05940 * 8 7 6 34 34 H 1.09000 * 109.52394 * 63.23813 * 8 7 6 35 35 H 1.09001 * 109.40258 * 297.48996 * 9 8 7 36 36 H 1.09002 * 109.48332 * 177.50479 * 9 8 7 37 37 H 1.09004 * 109.48038 * 301.16920 * 11 10 9 38 38 H 1.09005 * 109.48889 * 181.14689 * 11 10 9 39 39 H 1.09005 * 109.51995 * 182.48774 * 12 11 10 40 40 H 1.08996 * 109.57457 * 62.33158 * 12 11 10 41 41 H 0.97000 * 120.00442 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 3.1275 -0.6567 -1.2875 6 7 1.6349 -2.1325 -1.1994 7 6 2.6010 -2.9310 -0.4333 8 6 3.7173 -3.4157 -1.3636 9 6 4.6746 -4.3129 -0.5747 10 8 3.9473 -5.4053 -0.0092 11 6 2.9225 -5.0124 0.9060 12 6 1.8935 -4.1452 0.1761 13 6 1.4546 -0.0736 -2.4774 14 8 0.7680 -0.7231 -3.2363 15 8 1.6938 1.2234 -2.7314 16 6 1.1404 1.7412 -3.8476 17 1 0.5368 1.1176 -4.4904 18 6 1.3467 3.0749 -4.1698 19 7 2.0808 3.8341 -3.3873 20 14 0.5811 3.7916 -5.7157 21 1 -0.8965 3.6652 -5.6407 22 1 0.9504 5.2253 -5.8321 23 1 1.0814 3.0541 -6.9036 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 0.5140 0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5137 0.8901 28 1 1.7817 1.9192 0.9455 29 1 3.1229 1.4449 -0.1243 30 1 1.5787 1.9909 -0.8214 31 1 1.5127 -2.5066 -2.1285 32 1 3.0288 -2.3209 0.3623 33 1 3.2841 -3.9829 -2.1875 34 1 4.2615 -2.5574 -1.7576 35 1 5.1392 -3.7336 0.2232 36 1 5.4463 -4.6966 -1.2421 37 1 3.3641 -4.4422 1.7234 38 1 2.4319 -5.9000 1.3055 39 1 1.1348 -3.8080 0.8824 40 1 1.4214 -4.7270 -0.6155 41 1 2.2254 4.7664 -3.6126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748469109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:13 Heat of formation + Delta-G solvation = -139.185481 kcal Electronic energy + Delta-G solvation = -22209.208411 eV Core-core repulsion = 18896.013144 eV Total energy + Delta-G solvation = -3313.195267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.88391 -39.07990 -36.74172 -35.00896 -34.28892 -32.11327 -31.22720 -30.63305 -26.79975 -26.28498 -24.97378 -23.59682 -23.16926 -21.50163 -20.17304 -18.77995 -17.73997 -16.87912 -16.11149 -15.95853 -15.57600 -15.49847 -14.84461 -14.57200 -14.27074 -14.05499 -13.44007 -13.39885 -13.18846 -13.00192 -12.47019 -12.19961 -11.76290 -11.67795 -11.46215 -11.37148 -11.35972 -11.15308 -11.06128 -10.59020 -10.49729 -10.42909 -10.35359 -10.32512 -10.16296 -9.73315 -9.66499 -8.96753 -8.57301 -8.19422 -6.41793 -4.09127 3.11949 3.18163 3.21559 3.50734 3.74427 3.84577 4.20389 4.60739 4.71724 4.78253 4.90171 5.09041 5.11659 5.12962 5.31076 5.38032 5.42056 5.48104 5.56390 5.60427 5.74908 5.81326 5.90529 5.96336 6.09462 6.14196 6.20462 6.25711 6.51542 6.57643 6.59430 6.61552 6.90362 7.07266 7.23201 7.32242 7.42478 7.62733 7.95194 8.69763 9.07647 9.84618 10.75602 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029683 B = 0.004590 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.078261 B = 6098.351319 C = 6391.645305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 C -0.157 4.157 4 C 0.108 3.892 5 H 0.065 0.935 6 N -0.665 5.665 7 C 0.087 3.913 8 C -0.189 4.189 9 C 0.067 3.933 10 O -0.386 6.386 11 C 0.061 3.939 12 C -0.141 4.141 13 C 0.400 3.600 14 O -0.551 6.551 15 O -0.204 6.204 16 C -0.384 4.384 17 H 0.093 0.907 18 C 0.045 3.955 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.271 1.271 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.356 0.644 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 -11.084 8.958 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C -0.215 4.215 4 C -0.003 4.003 5 H 0.082 0.918 6 N -0.299 5.299 7 C -0.023 4.023 8 C -0.229 4.229 9 C -0.011 4.011 10 O -0.304 6.304 11 C -0.016 4.016 12 C -0.179 4.179 13 C 0.246 3.754 14 O -0.448 6.448 15 O -0.111 6.111 16 C -0.461 4.461 17 H 0.111 0.889 18 C -0.159 4.159 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.196 1.196 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.179 0.821 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.812 -11.075 9.222 14.683 hybrid contribution 0.372 0.685 -1.391 1.595 sum 3.185 -10.390 7.830 13.394 Atomic orbital electron populations 1.21735 0.94624 1.02018 1.01231 1.20963 0.96901 0.96052 0.95088 1.22026 1.01236 0.95333 1.02860 1.21034 0.97856 0.88412 0.93026 0.91759 1.60479 1.46158 1.00439 1.22807 1.21650 0.90561 0.94245 0.95885 1.22999 0.99083 1.00611 1.00189 1.22496 0.93559 0.88487 0.96528 1.87912 1.49288 1.32039 1.61198 1.22618 0.88584 0.99204 0.91209 1.22156 0.98563 0.96116 1.01076 1.23004 0.82172 0.83159 0.87042 1.90540 1.40003 1.64532 1.49758 1.83930 1.63357 1.22102 1.41661 1.21162 1.31021 0.94306 0.99588 0.88937 1.25267 0.96605 0.95038 0.99035 1.69968 1.36098 1.07137 1.36817 0.85790 0.79436 0.77830 0.80411 1.19524 1.20416 1.19608 0.92546 0.93606 0.91853 0.91560 0.93550 0.93217 0.88731 0.82099 0.90372 0.90639 0.90810 0.93198 0.89014 0.93281 0.88868 0.90138 0.90885 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.76 37.16 0.33 -2.11 16 2 C -0.07 -1.20 2.81 -90.62 -0.25 -1.46 16 3 C -0.16 -2.91 8.57 37.15 0.32 -2.59 16 4 C 0.11 1.98 2.15 -68.86 -0.15 1.83 16 5 H 0.06 1.14 7.34 -51.93 -0.38 0.76 16 6 N -0.66 -10.67 5.37 -100.76 -0.54 -11.21 16 7 C 0.09 1.10 2.33 -67.53 -0.16 0.94 16 8 C -0.19 -2.28 5.40 -26.59 -0.14 -2.43 16 9 C 0.07 0.70 6.84 37.21 0.25 0.96 16 10 O -0.39 -4.58 10.77 -35.23 -0.38 -4.95 16 11 C 0.06 0.60 6.84 37.20 0.25 0.86 16 12 C -0.14 -1.56 5.75 -26.60 -0.15 -1.72 16 13 C 0.40 9.62 5.74 36.01 0.21 9.82 16 14 O -0.55 -14.46 14.87 -19.05 -0.28 -14.74 16 15 O -0.20 -5.57 6.98 -20.70 -0.14 -5.72 16 16 C -0.38 -11.10 9.64 30.92 0.30 -10.80 16 17 H 0.09 2.72 6.86 -52.49 -0.36 2.36 16 18 C 0.04 1.23 5.49 -17.53 -0.10 1.14 16 19 N -0.86 -24.50 13.67 55.48 0.76 -23.74 16 20 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H 0.06 1.18 7.10 -51.92 -0.37 0.81 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.08 7.73 -51.93 -0.40 0.67 16 27 H 0.07 0.97 7.46 -51.93 -0.39 0.59 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 2.18 5.88 -51.93 -0.31 1.87 16 31 H 0.36 6.29 7.10 -39.29 -0.28 6.01 16 32 H 0.08 0.97 7.15 -51.93 -0.37 0.59 16 33 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -30.76 326.79 -6.59 -37.36 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.61 Total: 7.53 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 0.71 Total: -5.54 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.22 Total: -34.95 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.81 Total: -25.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.76 -6.59 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748469109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.827 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds