Wall clock time and date at job start Mon Mar 30 2020 01:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47087 * 2 1 4 4 C 1.52995 * 109.47371 * 239.99528 * 2 1 3 5 5 H 1.08999 * 109.47348 * 175.80531 * 4 2 1 6 6 N 1.46907 * 109.47143 * 295.80374 * 4 2 1 7 7 C 1.46896 * 111.00088 * 274.54555 * 6 4 2 8 8 C 1.53178 * 109.54351 * 272.43741 * 7 6 4 9 9 C 1.53099 * 109.15954 * 183.24221 * 8 7 6 10 10 O 1.42900 * 109.48856 * 57.46946 * 9 8 7 11 11 C 1.42901 * 114.09767 * 298.89332 * 10 9 8 12 12 C 1.53090 * 109.41599 * 61.15771 * 11 10 9 13 13 C 1.50701 * 109.46852 * 55.80044 * 4 2 1 14 14 O 1.21209 * 120.00137 * 239.99497 * 13 4 2 15 15 O 1.34313 * 119.99869 * 60.00742 * 13 4 2 16 16 C 1.34919 * 117.00029 * 179.97438 * 15 13 4 17 17 H 1.07998 * 120.00147 * 359.97438 * 16 15 13 18 18 C 1.38749 * 120.00179 * 179.97438 * 16 15 13 19 19 N 1.31444 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00193 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47044 * 60.00187 * 20 18 16 22 22 H 1.48498 * 109.47070 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47043 * 299.99990 * 20 18 16 24 24 H 1.09008 * 109.46924 * 60.00407 * 1 2 3 25 25 H 1.09001 * 109.47213 * 300.00993 * 1 2 3 26 26 H 1.09001 * 109.47431 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46891 * 119.99287 * 2 1 3 28 28 H 1.08997 * 109.47560 * 66.94494 * 3 2 1 29 29 H 1.09001 * 109.47003 * 186.94447 * 3 2 1 30 30 H 1.09006 * 109.47197 * 306.94511 * 3 2 1 31 31 H 1.00902 * 111.00181 * 150.58733 * 6 4 2 32 32 H 1.09004 * 109.54526 * 32.60797 * 7 6 4 33 33 H 1.09006 * 109.52105 * 303.05940 * 8 7 6 34 34 H 1.09000 * 109.52394 * 63.23813 * 8 7 6 35 35 H 1.09001 * 109.40258 * 297.48996 * 9 8 7 36 36 H 1.09002 * 109.48332 * 177.50479 * 9 8 7 37 37 H 1.09004 * 109.48038 * 301.16920 * 11 10 9 38 38 H 1.09005 * 109.48889 * 181.14689 * 11 10 9 39 39 H 1.09005 * 109.51995 * 182.48774 * 12 11 10 40 40 H 1.08996 * 109.57457 * 62.33158 * 12 11 10 41 41 H 0.97000 * 120.00442 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 3.1275 -0.6567 -1.2875 6 7 1.6349 -2.1325 -1.1994 7 6 2.6010 -2.9310 -0.4333 8 6 3.7173 -3.4157 -1.3636 9 6 4.6746 -4.3129 -0.5747 10 8 3.9473 -5.4053 -0.0092 11 6 2.9225 -5.0124 0.9060 12 6 1.8935 -4.1452 0.1761 13 6 1.4546 -0.0736 -2.4774 14 8 0.7680 -0.7231 -3.2363 15 8 1.6938 1.2234 -2.7314 16 6 1.1404 1.7412 -3.8476 17 1 0.5368 1.1176 -4.4904 18 6 1.3467 3.0749 -4.1698 19 7 2.0808 3.8341 -3.3873 20 14 0.5811 3.7916 -5.7157 21 1 -0.8965 3.6652 -5.6407 22 1 0.9504 5.2253 -5.8321 23 1 1.0814 3.0541 -6.9036 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 0.5140 0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5137 0.8901 28 1 1.7817 1.9192 0.9455 29 1 3.1229 1.4449 -0.1243 30 1 1.5787 1.9909 -0.8214 31 1 1.5127 -2.5066 -2.1285 32 1 3.0288 -2.3209 0.3623 33 1 3.2841 -3.9829 -2.1875 34 1 4.2615 -2.5574 -1.7576 35 1 5.1392 -3.7336 0.2232 36 1 5.4463 -4.6966 -1.2421 37 1 3.3641 -4.4422 1.7234 38 1 2.4319 -5.9000 1.3055 39 1 1.1348 -3.8080 0.8824 40 1 1.4214 -4.7270 -0.6155 41 1 2.2254 4.7664 -3.6126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748469109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:12 Heat of formation + Delta-G solvation = -159.773497 kcal Electronic energy + Delta-G solvation = -22210.101174 eV Core-core repulsion = 18896.013144 eV Total energy + Delta-G solvation = -3314.088030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46732 -40.31812 -38.21790 -36.97166 -35.51360 -34.22778 -32.11103 -31.80060 -28.43873 -27.81800 -26.74303 -24.46948 -24.26337 -23.14082 -21.26992 -20.38233 -19.85087 -18.39360 -17.43365 -17.20775 -16.91026 -16.88679 -16.34270 -15.88612 -15.70515 -15.24274 -14.96936 -14.80814 -14.53894 -14.35291 -13.91050 -13.58472 -13.35822 -13.27802 -12.99261 -12.84822 -12.51210 -12.31449 -12.24232 -12.19625 -12.14385 -12.07298 -11.81417 -11.70335 -11.54476 -11.22427 -10.90793 -10.66387 -10.58909 -9.46352 -8.51654 -6.29891 1.30607 1.33054 1.47320 1.64332 2.07680 2.59015 2.96909 2.99309 3.11669 3.73721 3.81715 3.89075 4.00369 4.04504 4.18045 4.29292 4.32651 4.40468 4.55353 4.56016 4.64262 4.70927 4.80335 4.81487 4.85840 4.90135 5.06716 5.10388 5.10539 5.15396 5.17187 5.20312 5.28279 5.44968 5.73338 5.86548 5.96169 6.23380 6.28261 6.68025 6.94026 7.79301 8.67482 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029683 B = 0.004590 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.078261 B = 6098.351319 C = 6391.645305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.151 4.151 4 C 0.118 3.882 5 H 0.075 0.925 6 N -0.664 5.664 7 C 0.085 3.915 8 C -0.187 4.187 9 C 0.069 3.931 10 O -0.403 6.403 11 C 0.061 3.939 12 C -0.135 4.135 13 C 0.397 3.603 14 O -0.580 6.580 15 O -0.223 6.223 16 C -0.422 4.422 17 H 0.075 0.925 18 C 0.003 3.997 19 N -0.894 5.894 20 Si 1.009 2.991 21 H -0.265 1.265 22 H -0.260 1.260 23 H -0.265 1.265 24 H 0.010 0.990 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.345 0.655 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -11.608 10.487 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C -0.209 4.209 4 C 0.007 3.993 5 H 0.093 0.907 6 N -0.298 5.298 7 C -0.024 4.024 8 C -0.227 4.227 9 C -0.008 4.008 10 O -0.322 6.322 11 C -0.016 4.016 12 C -0.173 4.173 13 C 0.245 3.755 14 O -0.478 6.478 15 O -0.130 6.130 16 C -0.498 4.498 17 H 0.092 0.908 18 C -0.198 4.198 19 N -0.530 5.530 20 Si 0.828 3.172 21 H -0.190 1.190 22 H -0.183 1.183 23 H -0.189 1.189 24 H 0.030 0.970 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.166 0.834 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.355 -11.615 10.780 16.197 hybrid contribution 0.207 0.767 -1.810 1.977 sum 3.562 -10.847 8.969 14.519 Atomic orbital electron populations 1.21677 0.95093 1.02018 1.00177 1.20997 0.96390 0.95292 0.95603 1.21932 1.00953 0.95912 1.02102 1.21122 0.97946 0.89476 0.90776 0.90735 1.60580 1.47533 0.99362 1.22308 1.21820 0.90271 0.94600 0.95759 1.22950 0.99220 1.00540 0.99947 1.22547 0.93157 0.88159 0.96969 1.87901 1.49804 1.32772 1.61691 1.22753 0.87909 0.99929 0.90980 1.22118 0.99018 0.95321 1.00862 1.24222 0.81017 0.82167 0.88091 1.90504 1.41199 1.64879 1.51191 1.83985 1.63897 1.23740 1.41373 1.21291 1.32617 0.95271 1.00638 0.90758 1.26333 0.96571 0.94634 1.02281 1.70049 1.36781 1.07720 1.38498 0.84810 0.78582 0.77766 0.76012 1.18996 1.18345 1.18940 0.97050 0.91133 0.91260 0.87431 0.91020 0.92967 0.93700 0.83383 0.89028 0.92022 0.91519 0.91598 0.88061 0.91591 0.87210 0.89321 0.92227 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.76 71.98 0.63 -3.91 16 2 C -0.06 -2.06 2.81 -10.80 -0.03 -2.09 16 3 C -0.15 -5.48 8.57 71.98 0.62 -4.87 16 4 C 0.12 4.29 2.15 44.17 0.09 4.38 16 5 H 0.08 2.57 7.34 -2.39 -0.02 2.56 16 6 N -0.66 -20.84 5.37 -472.70 -2.54 -23.38 16 7 C 0.08 1.98 2.33 45.03 0.10 2.08 16 8 C -0.19 -4.28 5.40 30.69 0.17 -4.12 16 9 C 0.07 1.30 6.84 72.02 0.49 1.79 16 10 O -0.40 -8.57 10.77 -148.98 -1.60 -10.17 16 11 C 0.06 1.01 6.84 72.01 0.49 1.51 16 12 C -0.13 -2.68 5.75 30.68 0.18 -2.51 16 13 C 0.40 19.80 5.74 71.24 0.41 20.21 16 14 O -0.58 -31.78 14.87 20.78 0.31 -31.47 16 15 O -0.22 -12.73 6.98 14.87 0.10 -12.62 16 16 C -0.42 -25.44 9.64 67.94 0.66 -24.78 16 17 H 0.07 4.62 6.86 -2.91 -0.02 4.60 16 18 C 0.00 0.17 5.49 84.87 0.47 0.63 16 19 N -0.89 -51.63 13.67 21.62 0.30 -51.34 16 20 Si 1.01 43.58 29.55 68.60 2.03 45.61 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 24 H 0.01 0.45 7.10 -2.38 -0.02 0.44 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 26 H 0.07 2.26 7.73 -2.39 -0.02 2.25 16 27 H 0.11 2.70 7.46 -2.39 -0.02 2.68 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 2.11 5.88 -2.38 -0.01 2.10 16 31 H 0.35 12.37 7.10 -89.69 -0.64 11.73 16 32 H 0.09 1.93 7.15 -2.38 -0.02 1.91 16 33 H 0.06 1.57 8.08 -2.38 -0.02 1.55 16 34 H 0.07 1.61 7.67 -2.39 -0.02 1.59 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -69.52 326.79 3.25 -66.27 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.38 Total: 28.77 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.28 Total: -11.67 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -2.25 Total: -74.71 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -1.19 Total: -54.27 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -69.52 3.25 -66.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748469109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.502 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds