Wall clock time and date at job start Mon Mar 30 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46662 * 2 1 4 4 O 1.42966 * 109.46887 * 119.99761 * 2 1 3 5 5 C 1.43090 * 113.76842 * 61.20894 * 4 2 1 6 6 C 1.53263 * 108.94310 * 57.96981 * 5 4 2 7 7 C 1.53003 * 109.57482 * 185.53739 * 6 5 4 8 8 C 1.50703 * 109.57596 * 65.28238 * 6 5 4 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 6 5 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 C 1.53264 * 108.84338 * 305.47564 * 6 5 4 22 22 O 1.42965 * 109.47386 * 240.00321 * 2 1 3 23 23 H 1.08989 * 109.47636 * 300.00236 * 1 2 3 24 24 H 1.09007 * 109.47021 * 60.00338 * 1 2 3 25 25 H 1.09005 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47055 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47642 * 299.99601 * 3 2 1 28 28 H 1.08997 * 109.47465 * 60.00171 * 3 2 1 29 29 H 1.09000 * 109.55989 * 298.13110 * 5 4 2 30 30 H 1.09006 * 109.64674 * 177.85714 * 5 4 2 31 31 H 1.08997 * 109.46818 * 299.74240 * 7 6 5 32 32 H 1.08994 * 109.46787 * 59.74666 * 7 6 5 33 33 H 1.09000 * 109.46601 * 179.74199 * 7 6 5 34 34 H 0.97000 * 119.99708 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 36 36 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 37 37 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.55716 * 174.36609 * 21 6 5 41 41 H 1.08997 * 109.55777 * 294.68483 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0065 -0.6739 1.1674 5 6 1.6041 -2.0448 1.2465 6 6 2.1044 -2.7829 0.0000 7 6 1.5658 -4.2151 0.0017 8 6 3.6112 -2.8102 0.0001 9 8 4.2270 -2.2914 0.9070 10 7 4.2743 -3.4111 -1.0077 11 6 5.7391 -3.4380 -1.0074 12 6 6.2358 -4.1742 -2.2533 13 6 7.7426 -4.2024 -2.2526 14 1 8.2910 -3.7411 -1.4446 15 6 8.4210 -4.8173 -3.2835 16 7 7.7533 -5.3794 -4.2672 17 14 10.2887 -4.8517 -3.2830 18 1 10.7705 -5.5547 -2.0669 19 1 10.7709 -5.5674 -4.4916 20 1 10.8094 -3.4611 -3.2899 21 6 1.6042 -2.0448 -1.2465 22 8 2.0066 -0.6739 -1.1673 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 0.5167 -2.1038 1.2937 30 1 2.0334 -2.5019 2.1381 31 1 1.9189 -4.7349 0.8922 32 1 0.4761 -4.1933 0.0016 33 1 1.9189 -4.7369 -0.8878 34 1 3.7817 -3.8263 -1.7329 35 1 6.0928 -3.9540 -0.1148 36 1 6.1212 -2.4172 -1.0124 37 1 5.8537 -5.1950 -2.2487 38 1 5.8821 -3.6578 -3.1456 39 1 8.2305 -5.8123 -4.9922 40 1 2.0350 -2.5007 -2.1380 41 1 0.5169 -2.1037 -1.2938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752840851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:37 Heat of formation + Delta-G solvation = -144.561731 kcal Electronic energy + Delta-G solvation = -22132.744847 eV Core-core repulsion = 18819.316448 eV Total energy + Delta-G solvation = -3313.428398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02468 -38.70555 -35.77071 -34.89006 -34.69616 -32.76101 -31.60790 -29.51300 -27.98842 -26.28955 -26.13039 -24.96462 -22.84865 -21.34955 -20.73014 -18.88610 -17.79093 -16.74272 -16.46552 -16.16367 -15.67580 -15.24537 -15.00255 -14.56540 -14.45852 -14.20738 -13.46864 -13.44282 -12.91608 -12.82758 -12.54157 -12.37373 -12.32248 -12.29014 -12.25508 -12.11798 -11.97340 -11.19325 -11.13856 -11.03527 -10.97913 -10.63800 -10.27717 -9.98480 -9.79321 -9.65394 -9.36232 -9.03845 -8.48661 -8.28961 -6.07154 -4.09738 3.04387 3.33041 3.36435 3.39604 3.50383 3.55249 3.76072 4.32674 4.42389 4.50096 4.54282 4.70655 4.88941 4.92914 5.07566 5.20021 5.25798 5.29852 5.41420 5.45220 5.52609 5.54656 5.57629 5.63904 5.77346 5.78451 5.96212 6.06566 6.39634 6.41063 6.78949 6.81565 6.99738 7.18635 7.54437 7.64954 7.91233 8.07849 8.31142 8.74576 8.96065 9.54872 11.04465 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.004007 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.565256 B = 6985.558625 C = 7200.822885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.261 3.739 3 C -0.128 4.128 4 O -0.366 6.366 5 C 0.084 3.916 6 C -0.156 4.156 7 C -0.139 4.139 8 C 0.525 3.475 9 O -0.532 6.532 10 N -0.721 5.721 11 C 0.124 3.876 12 C 0.014 3.986 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.069 3.931 22 O -0.377 6.377 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.393 0.607 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.103 0.897 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 6.856 6.912 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.184 3.816 3 C -0.185 4.185 4 O -0.286 6.286 5 C 0.007 3.993 6 C -0.160 4.160 7 C -0.196 4.196 8 C 0.309 3.691 9 O -0.409 6.409 10 N -0.371 5.371 11 C 0.002 3.998 12 C -0.024 4.024 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.008 4.008 22 O -0.298 6.298 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.227 0.773 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.240 7.331 7.401 21.006 hybrid contribution 0.448 -0.702 -0.550 0.998 sum -17.792 6.629 6.851 20.185 Atomic orbital electron populations 1.22854 0.96401 1.03141 1.03871 1.22801 0.90793 0.91512 0.76518 1.21581 1.03477 0.90615 1.02800 1.88259 1.75785 1.22745 1.41786 1.22472 0.97811 0.81850 0.97132 1.22174 0.95514 0.98843 0.99515 1.21723 1.01200 0.92900 1.03815 1.19840 0.88214 0.78426 0.82592 1.90685 1.69077 1.44873 1.36225 1.46243 1.09154 1.57158 1.24548 1.21689 0.76155 1.00886 1.01085 1.19310 0.96543 0.95352 0.91173 1.21024 0.91019 1.36360 1.07585 0.92326 1.24985 0.98725 0.95157 0.95352 1.69943 1.35693 1.36929 1.10828 0.86576 0.85259 0.78328 0.77400 1.20124 1.21246 1.20092 1.22722 0.99172 0.82008 0.96867 1.88213 1.76032 1.22801 1.42739 0.90528 0.90557 0.91805 0.90644 0.90446 0.90412 0.92374 0.87824 0.91207 0.91402 0.91053 0.77321 0.92728 0.92642 0.96046 0.95974 0.92825 0.87858 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.85 8.11 37.16 0.30 -1.55 16 2 C 0.26 3.32 1.50 -26.73 -0.04 3.28 16 3 C -0.13 -1.44 9.21 37.16 0.34 -1.10 16 4 O -0.37 -5.52 9.59 -64.71 -0.62 -6.14 16 5 C 0.08 1.06 4.82 37.29 0.18 1.24 16 6 C -0.16 -2.01 0.64 -155.38 -0.10 -2.11 16 7 C -0.14 -1.33 8.40 37.16 0.31 -1.02 16 8 C 0.53 9.42 6.13 -10.98 -0.07 9.35 16 9 O -0.53 -11.73 15.43 -8.66 -0.13 -11.87 16 10 N -0.72 -13.15 5.31 -60.29 -0.32 -13.47 16 11 C 0.12 2.75 5.61 -4.04 -0.02 2.73 16 12 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 13 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 C 0.07 0.82 5.23 37.29 0.20 1.02 16 22 O -0.38 -5.50 10.10 -59.03 -0.60 -6.10 16 23 H 0.08 0.61 8.14 -51.94 -0.42 0.18 16 24 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 25 H 0.06 0.52 5.11 -51.93 -0.27 0.26 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.55 6.53 -51.93 -0.34 0.21 16 30 H 0.10 1.37 7.95 -51.93 -0.41 0.95 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 34 H 0.39 6.20 7.29 -40.82 -0.30 5.90 16 35 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.10 1.18 7.48 -51.93 -0.39 0.79 16 41 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -33.95 327.97 -7.09 -41.04 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.63 Total: 1.96 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 0.55 Total: -1.37 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.42 Total: -39.08 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.35 Total: -24.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.95 -7.09 -41.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752840851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.520 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds