Wall clock time and date at job start Mon Mar 30 2020 00:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46662 * 2 1 4 4 O 1.42966 * 109.46887 * 119.99761 * 2 1 3 5 5 C 1.43090 * 113.76842 * 61.20894 * 4 2 1 6 6 C 1.53263 * 108.94310 * 57.96981 * 5 4 2 7 7 C 1.53003 * 109.57482 * 185.53739 * 6 5 4 8 8 C 1.50703 * 109.57596 * 65.28238 * 6 5 4 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 6 5 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 C 1.53264 * 108.84338 * 305.47564 * 6 5 4 22 22 O 1.42965 * 109.47386 * 240.00321 * 2 1 3 23 23 H 1.08989 * 109.47636 * 300.00236 * 1 2 3 24 24 H 1.09007 * 109.47021 * 60.00338 * 1 2 3 25 25 H 1.09005 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47055 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47642 * 299.99601 * 3 2 1 28 28 H 1.08997 * 109.47465 * 60.00171 * 3 2 1 29 29 H 1.09000 * 109.55989 * 298.13110 * 5 4 2 30 30 H 1.09006 * 109.64674 * 177.85714 * 5 4 2 31 31 H 1.08997 * 109.46818 * 299.74240 * 7 6 5 32 32 H 1.08994 * 109.46787 * 59.74666 * 7 6 5 33 33 H 1.09000 * 109.46601 * 179.74199 * 7 6 5 34 34 H 0.97000 * 119.99708 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 36 36 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 37 37 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.55716 * 174.36609 * 21 6 5 41 41 H 1.08997 * 109.55777 * 294.68483 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0065 -0.6739 1.1674 5 6 1.6041 -2.0448 1.2465 6 6 2.1044 -2.7829 0.0000 7 6 1.5658 -4.2151 0.0017 8 6 3.6112 -2.8102 0.0001 9 8 4.2270 -2.2914 0.9070 10 7 4.2743 -3.4111 -1.0077 11 6 5.7391 -3.4380 -1.0074 12 6 6.2358 -4.1742 -2.2533 13 6 7.7426 -4.2024 -2.2526 14 1 8.2910 -3.7411 -1.4446 15 6 8.4210 -4.8173 -3.2835 16 7 7.7533 -5.3794 -4.2672 17 14 10.2887 -4.8517 -3.2830 18 1 10.7705 -5.5547 -2.0669 19 1 10.7709 -5.5674 -4.4916 20 1 10.8094 -3.4611 -3.2899 21 6 1.6042 -2.0448 -1.2465 22 8 2.0066 -0.6739 -1.1673 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 0.5167 -2.1038 1.2937 30 1 2.0334 -2.5019 2.1381 31 1 1.9189 -4.7349 0.8922 32 1 0.4761 -4.1933 0.0016 33 1 1.9189 -4.7369 -0.8878 34 1 3.7817 -3.8263 -1.7329 35 1 6.0928 -3.9540 -0.1148 36 1 6.1212 -2.4172 -1.0124 37 1 5.8537 -5.1950 -2.2487 38 1 5.8821 -3.6578 -3.1456 39 1 8.2305 -5.8123 -4.9922 40 1 2.0350 -2.5007 -2.1380 41 1 0.5169 -2.1037 -1.2938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752840851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:36 Heat of formation + Delta-G solvation = -168.500079 kcal Electronic energy + Delta-G solvation = -22133.782891 eV Core-core repulsion = 18819.316448 eV Total energy + Delta-G solvation = -3314.466443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.09810 -40.05316 -36.86543 -36.49486 -35.88406 -34.75692 -32.52630 -31.40839 -28.75615 -27.30759 -27.00564 -26.79293 -24.21643 -22.88411 -22.14078 -20.21877 -18.75504 -18.52356 -17.81794 -17.29208 -16.94899 -16.52714 -16.52248 -16.05744 -15.80031 -15.51645 -14.88433 -14.54628 -14.31143 -14.27579 -13.66743 -13.34795 -13.32580 -13.23117 -13.18219 -13.06943 -13.02267 -12.93683 -12.75632 -12.55909 -12.26015 -12.03667 -11.94815 -11.68252 -11.49108 -10.95094 -10.86457 -10.61455 -10.37456 -10.01197 -8.25483 -6.36249 1.40321 1.42850 1.50883 1.66361 2.19431 2.42820 2.61003 2.76894 3.08928 3.36330 3.48512 3.72825 3.85694 3.91103 4.00005 4.28235 4.32902 4.44594 4.47985 4.57951 4.62381 4.66908 4.73813 4.74574 4.76456 4.80826 4.82572 4.87106 5.11065 5.18341 5.20722 5.28470 5.47522 5.55151 5.76314 5.92821 6.14580 6.27568 6.61902 6.75864 7.29890 7.32928 8.86157 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.004007 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.565256 B = 6985.558625 C = 7200.822885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.246 3.754 3 C -0.130 4.130 4 O -0.399 6.399 5 C 0.079 3.921 6 C -0.146 4.146 7 C -0.136 4.136 8 C 0.519 3.481 9 O -0.580 6.580 10 N -0.716 5.716 11 C 0.144 3.856 12 C 0.026 3.974 13 C -0.551 4.551 14 H 0.056 0.944 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.270 1.270 21 C 0.064 3.936 22 O -0.408 6.408 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.407 0.593 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.011 0.989 38 H 0.007 0.993 39 H 0.267 0.733 40 H 0.103 0.897 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.888 6.641 6.764 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.170 3.830 3 C -0.187 4.187 4 O -0.320 6.320 5 C 0.002 3.998 6 C -0.150 4.150 7 C -0.193 4.193 8 C 0.306 3.694 9 O -0.459 6.459 10 N -0.367 5.367 11 C 0.020 3.980 12 C -0.011 4.011 13 C -0.589 4.589 14 H 0.074 0.926 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.013 4.013 22 O -0.330 6.330 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.243 0.757 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.030 0.970 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.190 7.106 7.242 22.596 hybrid contribution 1.037 -0.607 -0.497 1.300 sum -19.153 6.499 6.745 21.320 Atomic orbital electron populations 1.22769 0.92956 1.04396 1.05105 1.23218 0.93254 0.91210 0.75328 1.21666 1.01432 0.91051 1.04542 1.88217 1.76950 1.23929 1.42891 1.22651 1.00039 0.80849 0.96246 1.22206 0.90853 1.01367 1.00606 1.21786 1.03577 0.90238 1.03730 1.20893 0.90757 0.76643 0.81129 1.90658 1.70758 1.46621 1.37882 1.46076 1.07493 1.57609 1.25545 1.21159 0.78809 0.98947 0.99106 1.19100 0.95516 0.94772 0.91717 1.21424 0.92630 1.36888 1.07951 0.92623 1.25847 1.03785 0.94485 0.94789 1.70040 1.37680 1.37320 1.11356 0.85511 0.79147 0.78608 0.77860 1.19314 1.20281 1.19516 1.22960 1.01523 0.80771 0.96016 1.88174 1.77121 1.24107 1.43553 0.89338 0.89287 0.90471 0.93871 0.88670 0.88705 0.88211 0.89315 0.91781 0.87470 0.90756 0.75718 0.93757 0.94602 0.97021 0.97499 0.92445 0.87889 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 8.11 71.98 0.58 -2.23 16 2 C 0.25 5.92 1.50 30.59 0.05 5.97 16 3 C -0.13 -2.88 9.21 71.98 0.66 -2.22 16 4 O -0.40 -11.79 9.59 -120.80 -1.16 -12.95 16 5 C 0.08 1.85 4.82 72.07 0.35 2.19 16 6 C -0.15 -3.51 0.64 -52.75 -0.03 -3.54 16 7 C -0.14 -2.20 8.40 71.98 0.60 -1.60 16 8 C 0.52 18.82 6.13 87.66 0.54 19.36 16 9 O -0.58 -26.53 15.43 10.58 0.16 -26.36 16 10 N -0.72 -26.60 5.31 -463.05 -2.46 -29.07 16 11 C 0.14 6.62 5.61 86.38 0.48 7.10 16 12 C 0.03 1.38 5.09 29.85 0.15 1.53 16 13 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.01 0.57 5.46 84.66 0.46 1.03 16 16 N -0.92 -54.68 13.29 21.45 0.28 -54.39 16 17 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.06 1.36 5.23 72.07 0.38 1.73 16 22 O -0.41 -11.46 10.10 -126.22 -1.28 -12.73 16 23 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.08 0.89 5.11 -2.38 -0.01 0.88 16 26 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 1.48 6.53 -2.39 -0.02 1.47 16 30 H 0.09 2.30 7.95 -2.38 -0.02 2.28 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.18 7.56 -2.39 -0.02 1.16 16 34 H 0.41 12.81 7.29 -92.71 -0.68 12.13 16 35 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.10 2.16 7.48 -2.38 -0.02 2.14 16 41 H 0.11 1.40 6.53 -2.39 -0.02 1.39 16 Total: -1.00 -75.78 327.97 2.38 -73.40 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.34 Total: 17.88 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.46 Total: -2.12 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.18 Total: -83.46 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -2.27 Total: -52.05 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -75.78 2.38 -73.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752840851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.100 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds