Wall clock time and date at job start Mon Mar 30 2020 00:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00055 * 2 1 4 4 C 1.50703 * 109.47064 * 269.99817 * 3 2 1 5 5 H 1.08000 * 120.00022 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00190 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99797 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00098 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46961 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47287 * 119.99387 * 8 6 4 11 11 H 1.48503 * 109.47097 * 239.99642 * 8 6 4 12 12 C 1.34775 * 119.99756 * 179.97438 * 2 1 3 13 13 O 1.21290 * 119.99745 * 174.60205 * 12 2 1 14 14 C 1.50700 * 120.00279 * 354.60804 * 12 2 1 15 15 C 1.53003 * 109.57228 * 54.95752 * 14 12 2 16 16 C 1.53261 * 109.57455 * 294.57205 * 14 12 2 17 17 O 1.43085 * 108.94188 * 294.71351 * 16 14 12 18 18 C 1.42966 * 113.77418 * 302.03147 * 17 16 14 19 19 C 1.53005 * 109.46685 * 298.79480 * 18 17 16 20 20 C 1.52998 * 109.47338 * 178.79568 * 18 17 16 21 21 O 1.42962 * 109.47153 * 58.79493 * 18 17 16 22 22 C 1.43095 * 113.76949 * 301.20564 * 21 18 17 23 23 H 1.08997 * 109.46730 * 89.01640 * 1 2 3 24 24 H 1.08997 * 109.47112 * 209.01908 * 1 2 3 25 25 H 1.09004 * 109.47146 * 329.01985 * 1 2 3 26 26 H 1.09004 * 109.47064 * 149.99926 * 3 2 1 27 27 H 1.09000 * 109.47374 * 29.99791 * 3 2 1 28 28 H 0.97001 * 119.99988 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47050 * 60.00382 * 15 14 12 30 30 H 1.09003 * 109.46775 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47311 * 300.00066 * 15 14 12 32 32 H 1.08996 * 109.55356 * 54.55372 * 16 14 12 33 33 H 1.09002 * 109.55630 * 174.87587 * 16 14 12 34 34 H 1.09000 * 109.46823 * 179.97438 * 19 18 17 35 35 H 1.08993 * 109.47177 * 299.99665 * 19 18 17 36 36 H 1.08995 * 109.46805 * 60.00092 * 19 18 17 37 37 H 1.08997 * 109.47252 * 299.99989 * 20 18 17 38 38 H 1.09007 * 109.47410 * 59.99942 * 20 18 17 39 39 H 1.09000 * 109.47144 * 179.97438 * 20 18 17 40 40 H 1.08995 * 109.56361 * 298.13228 * 22 21 18 41 41 H 1.09004 * 109.64802 * 177.86013 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6729 7 7 3.5543 3.6175 -0.6732 8 14 3.4390 3.4161 -3.4340 9 1 2.8619 2.4156 -4.3673 10 1 2.8018 4.7370 -3.6678 11 1 4.9016 3.5239 -3.6669 12 6 2.1388 -1.1672 0.0005 13 8 3.3477 -1.1696 -0.0983 14 6 1.3904 -2.4694 0.1237 15 6 0.3245 -2.5534 -0.9707 16 6 0.7233 -2.5499 1.5012 17 8 1.7396 -2.6020 2.5071 18 6 2.6423 -3.7005 2.3579 19 6 1.8668 -5.0154 2.4612 20 6 3.7006 -3.6445 3.4615 21 8 3.2807 -3.6227 1.0811 22 6 2.3690 -3.6399 -0.0216 23 1 -0.3633 0.0176 -1.0275 24 1 -0.3633 -0.8986 0.4985 25 1 -0.3634 0.8811 0.5290 26 1 3.1499 1.1383 0.5139 27 1 1.6085 2.0284 0.5138 28 1 4.0311 4.4434 -0.8505 29 1 0.8030 -2.5017 -1.9486 30 1 -0.2161 -3.4956 -0.8797 31 1 -0.3731 -1.7229 -0.8631 32 1 0.1005 -1.6690 1.6570 33 1 0.1084 -3.4481 1.5569 34 1 2.5550 -5.8529 2.3471 35 1 1.3802 -5.0747 3.4347 36 1 1.1130 -5.0552 1.6750 37 1 4.2530 -2.7077 3.3880 38 1 3.2139 -3.7038 4.4351 39 1 4.3886 -4.4823 3.3480 40 1 1.8164 -4.5794 -0.0236 41 1 2.9217 -3.5397 -0.9558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767185121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:39 Heat of formation + Delta-G solvation = -105.764388 kcal Electronic energy + Delta-G solvation = -23043.490629 eV Core-core repulsion = 19731.744609 eV Total energy + Delta-G solvation = -3311.746019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92443 -38.51488 -35.66084 -34.86799 -34.46955 -32.45614 -31.38930 -28.12648 -27.60974 -26.41109 -26.07075 -25.48988 -23.44291 -21.83426 -20.36697 -18.05615 -17.59456 -16.47417 -16.28495 -16.15280 -15.61845 -14.94612 -14.81249 -14.33854 -14.25229 -13.94182 -13.37850 -13.07018 -12.79600 -12.71153 -12.49496 -12.24777 -12.18106 -12.10181 -11.93753 -11.78511 -11.57030 -11.38706 -11.16084 -10.88911 -10.78124 -10.69676 -10.44793 -10.10843 -9.67526 -9.55033 -9.51323 -8.62425 -8.38704 -7.54418 -5.98951 -4.03140 3.32529 3.39645 3.42711 3.46576 3.68278 3.79848 4.03043 4.47961 4.55189 4.66933 4.71064 4.84071 5.08258 5.15021 5.20385 5.31260 5.34240 5.39394 5.42082 5.60296 5.65322 5.71265 5.73699 5.75224 5.81595 5.88968 5.96722 5.97709 6.14104 6.21382 6.26609 7.00566 7.12711 7.38046 7.51525 7.62887 7.97707 8.29814 8.50286 8.97149 9.21067 9.61633 11.09184 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028531 B = 0.005484 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.139212 B = 5104.219517 C = 5321.805801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.602 5.602 3 C 0.248 3.752 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.525 3.475 13 O -0.519 6.519 14 C -0.156 4.156 15 C -0.162 4.162 16 C 0.063 3.937 17 O -0.378 6.378 18 C 0.261 3.739 19 C -0.205 4.205 20 C -0.127 4.127 21 O -0.363 6.363 22 C 0.086 3.914 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 -16.476 5.435 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.129 3.871 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.310 3.690 13 O -0.394 6.394 14 C -0.160 4.160 15 C -0.219 4.219 16 C -0.013 4.013 17 O -0.298 6.298 18 C 0.184 3.816 19 C -0.262 4.262 20 C -0.184 4.184 21 O -0.283 6.283 22 C 0.009 3.991 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.074 -16.139 5.564 18.884 hybrid contribution -0.288 0.254 -1.295 1.350 sum -8.363 -15.885 4.269 18.452 Atomic orbital electron populations 1.22124 0.82383 1.01578 1.01049 1.48010 1.05632 1.07703 1.72119 1.19268 0.92451 0.77975 0.97377 1.21465 1.36146 1.06052 0.92370 0.92539 1.24940 0.95454 0.96470 0.97349 1.69948 1.38593 1.14352 1.30603 0.86452 0.78072 0.78218 0.84713 1.19884 1.21019 1.20897 1.19621 0.87698 0.84024 0.77654 1.90695 1.13825 1.86454 1.48382 1.22123 0.98526 0.97191 0.98144 1.22262 0.98228 1.03457 0.97927 1.22961 0.89919 1.02863 0.85575 1.88191 1.42095 1.50063 1.49500 1.22763 0.87603 0.85349 0.85869 1.22854 1.01680 0.98506 1.03191 1.21572 0.97223 1.04169 0.95472 1.88266 1.33006 1.93493 1.13555 1.22442 0.91359 0.94065 0.91200 0.92882 0.91571 0.91617 0.94031 0.95122 0.92837 0.91392 0.92045 0.89252 0.87242 0.92176 0.90620 0.90718 0.91859 0.90545 0.90639 0.90506 0.92755 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 8.38 59.85 0.50 1.66 16 2 N -0.60 -13.24 2.86 -182.95 -0.52 -13.76 16 3 C 0.25 6.75 5.16 -5.19 -0.03 6.73 16 4 C -0.52 -15.21 9.39 -34.44 -0.32 -15.53 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 8 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 C 0.53 11.51 6.15 -10.99 -0.07 11.44 16 13 O -0.52 -13.96 15.01 -10.53 -0.16 -14.12 16 14 C -0.16 -2.44 0.51 -155.39 -0.08 -2.52 16 15 C -0.16 -1.98 8.07 37.16 0.30 -1.68 16 16 C 0.06 0.87 4.98 37.29 0.19 1.06 16 17 O -0.38 -6.19 10.10 -59.03 -0.60 -6.79 16 18 C 0.26 3.81 1.50 -26.73 -0.04 3.77 16 19 C -0.20 -2.15 8.11 37.16 0.30 -1.84 16 20 C -0.13 -1.64 9.21 37.16 0.34 -1.30 16 21 O -0.36 -6.38 9.48 -65.19 -0.62 -7.00 16 22 C 0.09 1.33 4.83 37.30 0.18 1.51 16 23 H 0.05 0.81 7.33 -51.93 -0.38 0.43 16 24 H 0.07 0.83 3.05 -51.93 -0.16 0.67 16 25 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 26 H 0.04 1.29 7.50 -51.93 -0.39 0.90 16 27 H 0.03 0.84 7.90 -51.93 -0.41 0.43 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.04 3.79 -51.93 -0.20 0.84 16 32 H 0.11 1.44 5.26 -51.93 -0.27 1.16 16 33 H 0.06 0.64 6.53 -51.93 -0.34 0.30 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.62 5.11 -51.93 -0.27 0.35 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.64 6.53 -51.93 -0.34 0.30 16 41 H 0.10 1.67 8.03 -51.93 -0.42 1.26 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -35.99 315.39 -6.33 -42.32 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.08 Total: -1.12 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 1.18 Total: 4.94 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.21 Total: -40.32 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -1.37 Total: -27.91 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.99 -6.33 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767185121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.440 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds