Wall clock time and date at job start Mon Mar 30 2020 00:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00055 * 2 1 4 4 C 1.50703 * 109.47064 * 269.99817 * 3 2 1 5 5 H 1.08000 * 120.00022 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00190 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99797 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00098 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46961 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47287 * 119.99387 * 8 6 4 11 11 H 1.48503 * 109.47097 * 239.99642 * 8 6 4 12 12 C 1.34775 * 119.99756 * 179.97438 * 2 1 3 13 13 O 1.21290 * 119.99745 * 174.60205 * 12 2 1 14 14 C 1.50700 * 120.00279 * 354.60804 * 12 2 1 15 15 C 1.53003 * 109.57228 * 54.95752 * 14 12 2 16 16 C 1.53261 * 109.57455 * 294.57205 * 14 12 2 17 17 O 1.43085 * 108.94188 * 294.71351 * 16 14 12 18 18 C 1.42966 * 113.77418 * 302.03147 * 17 16 14 19 19 C 1.53005 * 109.46685 * 298.79480 * 18 17 16 20 20 C 1.52998 * 109.47338 * 178.79568 * 18 17 16 21 21 O 1.42962 * 109.47153 * 58.79493 * 18 17 16 22 22 C 1.43095 * 113.76949 * 301.20564 * 21 18 17 23 23 H 1.08997 * 109.46730 * 89.01640 * 1 2 3 24 24 H 1.08997 * 109.47112 * 209.01908 * 1 2 3 25 25 H 1.09004 * 109.47146 * 329.01985 * 1 2 3 26 26 H 1.09004 * 109.47064 * 149.99926 * 3 2 1 27 27 H 1.09000 * 109.47374 * 29.99791 * 3 2 1 28 28 H 0.97001 * 119.99988 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47050 * 60.00382 * 15 14 12 30 30 H 1.09003 * 109.46775 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47311 * 300.00066 * 15 14 12 32 32 H 1.08996 * 109.55356 * 54.55372 * 16 14 12 33 33 H 1.09002 * 109.55630 * 174.87587 * 16 14 12 34 34 H 1.09000 * 109.46823 * 179.97438 * 19 18 17 35 35 H 1.08993 * 109.47177 * 299.99665 * 19 18 17 36 36 H 1.08995 * 109.46805 * 60.00092 * 19 18 17 37 37 H 1.08997 * 109.47252 * 299.99989 * 20 18 17 38 38 H 1.09007 * 109.47410 * 59.99942 * 20 18 17 39 39 H 1.09000 * 109.47144 * 179.97438 * 20 18 17 40 40 H 1.08995 * 109.56361 * 298.13228 * 22 21 18 41 41 H 1.09004 * 109.64802 * 177.86013 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6729 7 7 3.5543 3.6175 -0.6732 8 14 3.4390 3.4161 -3.4340 9 1 2.8619 2.4156 -4.3673 10 1 2.8018 4.7370 -3.6678 11 1 4.9016 3.5239 -3.6669 12 6 2.1388 -1.1672 0.0005 13 8 3.3477 -1.1696 -0.0983 14 6 1.3904 -2.4694 0.1237 15 6 0.3245 -2.5534 -0.9707 16 6 0.7233 -2.5499 1.5012 17 8 1.7396 -2.6020 2.5071 18 6 2.6423 -3.7005 2.3579 19 6 1.8668 -5.0154 2.4612 20 6 3.7006 -3.6445 3.4615 21 8 3.2807 -3.6227 1.0811 22 6 2.3690 -3.6399 -0.0216 23 1 -0.3633 0.0176 -1.0275 24 1 -0.3633 -0.8986 0.4985 25 1 -0.3634 0.8811 0.5290 26 1 3.1499 1.1383 0.5139 27 1 1.6085 2.0284 0.5138 28 1 4.0311 4.4434 -0.8505 29 1 0.8030 -2.5017 -1.9486 30 1 -0.2161 -3.4956 -0.8797 31 1 -0.3731 -1.7229 -0.8631 32 1 0.1005 -1.6690 1.6570 33 1 0.1084 -3.4481 1.5569 34 1 2.5550 -5.8529 2.3471 35 1 1.3802 -5.0747 3.4347 36 1 1.1130 -5.0552 1.6750 37 1 4.2530 -2.7077 3.3880 38 1 3.2139 -3.7038 4.4351 39 1 4.3886 -4.4823 3.3480 40 1 1.8164 -4.5794 -0.0236 41 1 2.9217 -3.5397 -0.9558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767185121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:38 Heat of formation + Delta-G solvation = -131.972579 kcal Electronic energy + Delta-G solvation = -23044.627101 eV Core-core repulsion = 19731.744609 eV Total energy + Delta-G solvation = -3312.882492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.18608 -40.01604 -37.00902 -36.41902 -35.96629 -34.51556 -32.46630 -29.88580 -28.68584 -27.91023 -27.18918 -26.67532 -25.41517 -23.14384 -21.76174 -19.54381 -18.76600 -18.68378 -17.54206 -17.47315 -17.03345 -16.62684 -16.18034 -15.85129 -15.55637 -15.46812 -14.68067 -14.52705 -14.15772 -14.03721 -13.74529 -13.61251 -13.37006 -13.21755 -13.16085 -13.02842 -12.93847 -12.84415 -12.72277 -12.65434 -12.32494 -12.22309 -11.93777 -11.73496 -11.68490 -10.83589 -10.73235 -10.67094 -10.19259 -9.40319 -8.23984 -6.39339 1.33345 1.36660 1.48357 1.86872 2.27258 2.42431 2.62131 2.80049 3.04750 3.35346 3.51095 3.74788 3.85178 3.93373 4.05411 4.17378 4.28402 4.35937 4.58900 4.62056 4.66038 4.67679 4.73503 4.75768 4.75936 4.78875 4.84742 4.93939 5.02254 5.13366 5.17814 5.19841 5.28289 5.55117 5.83870 5.97328 6.04280 6.31099 6.68257 6.80337 7.27085 7.52958 8.83420 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028531 B = 0.005484 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.139212 B = 5104.219517 C = 5321.805801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.610 5.610 3 C 0.263 3.737 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.971 3.029 9 H -0.266 1.266 10 H -0.266 1.266 11 H -0.283 1.283 12 C 0.511 3.489 13 O -0.586 6.586 14 C -0.146 4.146 15 C -0.158 4.158 16 C 0.059 3.941 17 O -0.409 6.409 18 C 0.245 3.755 19 C -0.193 4.193 20 C -0.130 4.130 21 O -0.402 6.402 22 C 0.081 3.919 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.068 0.932 26 H -0.013 1.013 27 H 0.023 0.977 28 H 0.267 0.733 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.932 -18.711 4.790 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.341 5.341 3 C 0.142 3.858 4 C -0.577 4.577 5 H 0.070 0.930 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.191 1.191 11 H -0.209 1.209 12 C 0.300 3.700 13 O -0.466 6.466 14 C -0.150 4.150 15 C -0.215 4.215 16 C -0.016 4.016 17 O -0.330 6.330 18 C 0.169 3.831 19 C -0.250 4.250 20 C -0.187 4.187 21 O -0.323 6.323 22 C 0.005 3.995 23 H 0.085 0.915 24 H 0.127 0.873 25 H 0.087 0.913 26 H 0.005 0.995 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.011 -18.388 4.925 21.992 hybrid contribution 0.649 0.960 -1.020 1.544 sum -10.362 -17.428 3.906 20.649 Atomic orbital electron populations 1.22494 0.78511 1.04006 1.02621 1.48040 1.08076 1.06142 1.71853 1.18707 0.90674 0.80458 0.96005 1.21700 1.36715 1.06393 0.92896 0.92979 1.25918 0.94855 0.96437 1.02212 1.70073 1.39038 1.14854 1.33108 0.85319 0.77842 0.78475 0.78852 1.19061 1.19081 1.20860 1.20918 0.87457 0.85988 0.75679 1.90649 1.17063 1.87694 1.51176 1.22157 0.98975 0.92859 1.01010 1.22305 0.97183 1.06414 0.95575 1.23203 0.89605 1.05380 0.83447 1.88153 1.42989 1.51579 1.50283 1.23242 0.88157 0.86954 0.84745 1.22757 1.01677 0.95824 1.04753 1.21667 0.97471 1.02828 0.96691 1.88221 1.35003 1.93879 1.15156 1.22585 0.91195 0.95873 0.89868 0.91524 0.87307 0.91289 0.99511 0.95937 0.92401 0.92921 0.87228 0.88511 0.86912 0.87254 0.89447 0.88914 0.90421 0.94363 0.88288 0.88783 0.87977 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.99 8.38 127.77 1.07 3.06 16 2 N -0.61 -27.52 2.86 -851.13 -2.43 -29.95 16 3 C 0.26 15.15 5.16 85.64 0.44 15.59 16 4 C -0.54 -32.54 9.39 25.60 0.24 -32.30 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.00 0.26 5.46 84.65 0.46 0.72 16 7 N -0.93 -58.60 13.29 21.45 0.28 -58.32 16 8 Si 0.97 46.51 29.54 68.60 2.03 48.53 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 12 C 0.51 23.09 6.15 87.66 0.54 23.63 16 13 O -0.59 -33.76 15.01 12.32 0.18 -33.58 16 14 C -0.15 -4.31 0.51 -52.75 -0.03 -4.34 16 15 C -0.16 -3.28 8.07 71.98 0.58 -2.69 16 16 C 0.06 1.44 4.98 72.07 0.36 1.80 16 17 O -0.41 -12.87 10.10 -126.22 -1.28 -14.15 16 18 C 0.24 6.82 1.50 30.60 0.05 6.86 16 19 C -0.19 -3.24 8.11 71.98 0.58 -2.65 16 20 C -0.13 -3.33 9.21 71.98 0.66 -2.67 16 21 O -0.40 -14.15 9.48 -120.33 -1.14 -15.29 16 22 C 0.08 2.38 4.83 72.07 0.35 2.73 16 23 H 0.07 1.88 7.33 -2.39 -0.02 1.86 16 24 H 0.11 2.38 3.05 -2.39 -0.01 2.37 16 25 H 0.07 2.06 7.91 -2.38 -0.02 2.04 16 26 H -0.01 -0.89 7.50 -2.39 -0.02 -0.91 16 27 H 0.02 1.31 7.90 -2.39 -0.02 1.29 16 28 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.85 3.79 -2.39 -0.01 1.84 16 32 H 0.11 2.57 5.26 -2.39 -0.01 2.56 16 33 H 0.11 1.63 6.53 -2.39 -0.02 1.61 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.06 5.11 -2.39 -0.01 1.05 16 37 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.10 1.97 6.53 -2.39 -0.02 1.95 16 41 H 0.08 2.58 8.03 -2.38 -0.02 2.56 16 Total: -1.00 -86.19 315.39 3.98 -82.20 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.03 Total: 10.81 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 5.31 Total: 9.74 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -2.15 Total: -88.27 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -2.23 Total: -63.01 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -86.19 3.98 -82.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767185121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.770 kcal (2) G-P(sol) polarization free energy of solvation -86.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds