Wall clock time and date at job start Mon Mar 30 2020 01:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 C 1.50698 * 109.47043 * 239.99768 * 2 1 3 5 5 O 1.20823 * 119.99922 * 24.13357 * 4 2 1 6 6 O 1.34231 * 119.99596 * 204.13697 * 4 2 1 7 7 C 1.45201 * 116.99545 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47213 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.46995 * 179.97438 * 8 7 6 10 10 H 1.07992 * 120.00385 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99582 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99692 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00038 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47520 * 89.99772 * 13 11 9 15 15 H 1.48500 * 109.46873 * 209.99687 * 13 11 9 16 16 H 1.48502 * 109.46969 * 329.99685 * 13 11 9 17 17 N 1.46906 * 109.47045 * 119.99714 * 2 1 3 18 18 C 1.47018 * 110.99683 * 297.78215 * 17 2 1 19 19 C 1.53099 * 109.25509 * 182.35088 * 18 17 2 20 20 O 1.43018 * 109.29169 * 303.21552 * 19 18 17 21 21 C 1.43015 * 113.74066 * 58.64915 * 20 19 18 22 22 C 1.47018 * 110.99710 * 61.45740 * 17 2 1 23 23 H 1.09002 * 109.46914 * 299.99979 * 1 2 3 24 24 H 1.08997 * 109.46752 * 60.00112 * 1 2 3 25 25 H 1.08994 * 109.47195 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46694 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47226 * 299.99598 * 3 2 1 28 28 H 1.09002 * 109.47219 * 60.00208 * 3 2 1 29 29 H 1.09003 * 109.47257 * 299.99854 * 7 6 4 30 30 H 1.08998 * 109.47293 * 59.99824 * 7 6 4 31 31 H 1.08989 * 109.47033 * 300.00256 * 8 7 6 32 32 H 1.09005 * 109.46689 * 60.00336 * 8 7 6 33 33 H 0.97001 * 119.99940 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47581 * 62.43823 * 18 17 2 35 35 H 1.08998 * 109.54570 * 302.30334 * 18 17 2 36 36 H 1.08994 * 109.51072 * 183.25566 * 19 18 17 37 37 H 1.09004 * 109.50751 * 63.16503 * 19 18 17 38 38 H 1.09004 * 109.51009 * 61.26244 * 21 20 19 39 39 H 1.08993 * 109.50888 * 181.35428 * 21 20 19 40 40 H 1.08998 * 109.50279 * 57.67390 * 22 17 2 41 41 H 1.09001 * 109.54499 * 297.56356 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 1.3334 -0.7839 -2.2132 6 8 3.2562 -1.2617 -1.2344 7 6 3.6739 -1.9304 -2.4537 8 6 5.0856 -2.4912 -2.2699 9 6 5.5189 -3.1857 -3.5352 10 1 4.8541 -3.2232 -4.3854 11 6 6.7641 -3.7735 -3.6072 12 7 7.1423 -4.3792 -4.7115 13 14 7.9136 -3.7094 -2.1362 14 1 7.6785 -4.8940 -1.2721 15 1 9.3217 -3.7125 -2.6079 16 1 7.6546 -2.4707 -1.3592 17 7 2.0197 -0.6925 1.1995 18 6 1.5921 0.0043 2.4215 19 6 2.1715 -0.7156 3.6421 20 8 1.7564 -2.0841 3.6248 21 6 2.1574 -2.7925 2.4489 22 6 1.5770 -2.0943 1.2162 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.9849 -2.7454 -2.6754 30 1 3.6710 -1.2177 -3.2783 31 1 5.7743 -1.6760 -2.0484 32 1 5.0889 -3.2039 -1.4452 33 1 8.0182 -4.7931 -4.7621 34 1 0.5037 0.0010 2.4797 35 1 1.9530 1.0326 2.4002 36 1 1.8102 -0.2371 4.5523 37 1 3.2600 -0.6651 3.6118 38 1 3.2454 -2.8023 2.3831 39 1 1.7864 -3.8163 2.4965 40 1 1.9268 -2.5971 0.3146 41 1 0.4883 -2.1325 1.2551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787527868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:56 Heat of formation + Delta-G solvation = -148.497263 kcal Electronic energy + Delta-G solvation = -22151.642814 eV Core-core repulsion = 18838.043758 eV Total energy + Delta-G solvation = -3313.599056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10423 -40.44644 -38.18291 -37.41913 -35.39979 -33.13202 -32.77004 -32.17301 -28.52661 -27.86335 -27.32471 -25.47172 -24.15348 -22.61326 -21.86252 -20.44123 -19.30676 -18.72260 -17.78127 -17.58389 -17.06138 -16.74766 -16.30946 -15.98247 -15.94049 -15.58858 -15.32797 -15.15290 -14.92889 -14.44701 -13.95482 -13.63682 -13.31185 -13.26852 -13.18285 -13.01396 -12.84290 -12.57465 -12.51518 -12.48303 -12.30490 -12.07233 -11.82510 -11.57221 -11.46843 -11.44242 -11.30757 -10.82599 -10.69359 -9.44969 -8.35916 -6.44082 1.04315 1.36918 1.38520 1.51581 1.65321 2.33153 2.51073 2.94776 2.99052 3.39492 3.71540 3.81351 3.89597 3.98890 4.09086 4.12933 4.16124 4.25795 4.32050 4.48910 4.55977 4.57525 4.60215 4.63749 4.70447 4.79106 4.81451 4.87085 4.99381 5.04090 5.09157 5.18511 5.26784 5.47925 5.51480 5.69928 5.86851 6.14084 6.17693 6.61680 6.68549 7.21170 8.80282 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.005146 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.753273 B = 5440.339651 C = 6268.917800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 C -0.139 4.139 4 C 0.465 3.535 5 O -0.542 6.542 6 O -0.342 6.342 7 C 0.090 3.910 8 C 0.002 3.998 9 C -0.543 4.543 10 H 0.034 0.966 11 C 0.014 3.986 12 N -0.944 5.944 13 Si 0.952 3.048 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.245 1.245 17 N -0.526 5.526 18 C 0.012 3.988 19 C 0.059 3.941 20 O -0.399 6.399 21 C 0.070 3.930 22 C 0.012 3.988 23 H 0.103 0.897 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.271 0.729 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 11.787 20.061 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.031 3.969 3 C -0.196 4.196 4 C 0.309 3.691 5 O -0.432 6.432 6 O -0.257 6.257 7 C 0.017 3.983 8 C -0.036 4.036 9 C -0.581 4.581 10 H 0.052 0.948 11 C -0.184 4.184 12 N -0.583 5.583 13 Si 0.775 3.225 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.169 1.169 17 N -0.252 5.252 18 C -0.114 4.114 19 C -0.018 4.018 20 O -0.318 6.318 21 C -0.007 4.007 22 C -0.116 4.116 23 H 0.121 0.879 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.940 11.566 19.791 25.846 hybrid contribution -0.125 -0.508 -0.933 1.069 sum -12.065 11.058 18.858 24.970 Atomic orbital electron populations 1.22344 0.92253 1.03116 1.04789 1.21083 0.94886 0.95651 0.85260 1.21962 1.02689 0.90139 1.04840 1.24301 0.79334 0.75403 0.90092 1.90637 1.57957 1.57376 1.37207 1.86601 1.33387 1.64760 1.40956 1.22941 0.97076 0.94854 0.83459 1.19403 0.91273 0.96395 0.96512 1.21110 1.01752 1.36125 0.99066 0.94763 1.25924 0.99523 0.93619 0.99330 1.70039 1.21652 1.37415 1.29233 0.85628 0.77430 0.80416 0.79066 1.18734 1.20480 1.16869 1.62394 1.59507 1.01820 1.01524 1.23081 0.99783 1.00108 0.88462 1.22885 0.99558 0.81071 0.98255 1.87954 1.78884 1.24260 1.40682 1.22610 0.99337 0.95931 0.82781 1.22855 0.99055 0.89639 1.00086 0.87891 0.90892 0.92874 0.91260 0.91064 0.87264 0.92857 0.92775 0.94829 0.94910 0.92017 0.92367 0.86693 0.85752 0.92438 0.92607 0.87169 0.91881 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 7.30 71.98 0.53 -2.71 16 2 C 0.12 2.83 0.67 2.78 0.00 2.83 16 3 C -0.14 -2.46 8.16 71.98 0.59 -1.87 16 4 C 0.46 15.70 5.46 71.24 0.39 16.09 16 5 O -0.54 -21.28 15.83 21.97 0.35 -20.93 16 6 O -0.34 -13.05 9.26 -51.43 -0.48 -13.53 16 7 C 0.09 3.98 5.40 71.98 0.39 4.37 16 8 C 0.00 0.08 4.42 29.85 0.13 0.21 16 9 C -0.54 -31.77 9.66 25.60 0.25 -31.52 16 10 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 11 C 0.01 0.83 5.47 84.66 0.46 1.29 16 12 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 13 Si 0.95 43.78 27.47 68.60 1.88 45.66 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 17 N -0.53 -11.53 4.33 -849.88 -3.68 -15.21 16 18 C 0.01 0.18 4.87 86.31 0.42 0.60 16 19 C 0.06 0.89 7.01 72.02 0.50 1.39 16 20 O -0.40 -8.33 10.83 -148.98 -1.61 -9.94 16 21 C 0.07 1.52 7.01 72.02 0.50 2.02 16 22 C 0.01 0.28 4.91 86.31 0.42 0.70 16 23 H 0.10 1.34 6.50 -2.39 -0.02 1.33 16 24 H 0.07 1.51 7.87 -2.39 -0.02 1.49 16 25 H 0.05 1.15 6.49 -2.39 -0.02 1.14 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.11 1.15 6.32 -2.39 -0.02 1.14 16 29 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 30 H 0.05 2.45 8.13 -2.39 -0.02 2.43 16 31 H 0.03 1.59 7.20 -2.39 -0.02 1.57 16 32 H 0.03 1.53 7.57 -2.38 -0.02 1.51 16 33 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 34 H 0.06 0.76 6.49 -2.39 -0.02 0.74 16 35 H 0.12 1.15 6.14 -2.39 -0.01 1.14 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.06 1.83 6.50 -2.39 -0.02 1.81 16 41 H 0.05 1.18 6.47 -2.39 -0.02 1.17 16 Total: -1.00 -71.07 321.73 2.31 -68.76 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.95 Total: 10.44 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 4.59 Total: -6.60 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -3.38 Total: -73.87 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.74 Total: -44.40 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -71.07 2.31 -68.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787527868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.733 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds