Wall clock time and date at job start Mon Mar 30 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47347 * 2 1 4 4 C 1.52997 * 109.47049 * 119.99611 * 2 1 3 5 5 N 1.46506 * 109.47289 * 174.99938 * 4 2 1 6 6 C 1.46493 * 119.99811 * 89.99895 * 5 4 2 7 7 C 1.50706 * 109.47492 * 90.00399 * 6 5 4 8 8 H 1.08004 * 119.99292 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00653 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99582 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00141 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47116 * 60.00216 * 11 9 7 13 13 H 1.48500 * 109.46968 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47189 * 300.00241 * 11 9 7 15 15 C 1.34778 * 120.00058 * 270.00324 * 5 4 2 16 16 O 1.21273 * 119.99770 * 179.97438 * 15 5 4 17 17 C 1.50697 * 119.99918 * 359.97438 * 15 5 4 18 18 C 1.52999 * 109.47270 * 179.97438 * 17 15 5 19 19 O 1.43745 * 109.63297 * 294.36996 * 18 17 15 20 20 C 1.44786 * 104.81442 * 215.80455 * 19 18 17 21 21 C 1.54910 * 101.72303 * 36.10182 * 20 19 18 22 22 O 1.43364 * 109.63320 * 174.99994 * 18 17 15 23 23 H 1.09002 * 109.47137 * 300.00757 * 1 2 3 24 24 H 1.09000 * 109.46959 * 60.00236 * 1 2 3 25 25 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47250 * 239.99730 * 2 1 3 27 27 H 1.09004 * 109.46683 * 300.00277 * 3 2 1 28 28 H 1.09002 * 109.47620 * 59.99538 * 3 2 1 29 29 H 1.09000 * 109.47757 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47289 * 54.99809 * 4 2 1 31 31 H 1.09004 * 109.47261 * 295.00065 * 4 2 1 32 32 H 1.09006 * 109.47571 * 210.00074 * 6 5 4 33 33 H 1.09005 * 109.47727 * 330.00531 * 6 5 4 34 34 H 0.97002 * 119.99852 * 179.97438 * 10 9 7 35 35 H 1.08998 * 109.47545 * 300.00776 * 17 15 5 36 36 H 1.09008 * 109.47188 * 60.00003 * 17 15 5 37 37 H 1.09000 * 109.62292 * 54.60954 * 18 17 15 38 38 H 1.08998 * 110.97674 * 277.99195 * 20 19 18 39 39 H 1.09005 * 111.01020 * 154.22533 * 20 19 18 40 40 H 1.08996 * 110.69733 * 206.04513 * 21 20 19 41 41 H 1.08998 * 110.84419 * 82.90253 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.3343 0.2341 1.7613 7 6 4.6221 -0.0765 3.2076 8 1 4.2238 -0.9744 3.6566 9 6 5.3948 0.7849 3.9572 10 7 5.8802 1.8779 3.4102 11 14 5.7509 0.4001 5.7501 12 1 6.4656 -0.8980 5.8453 13 1 6.5966 1.4750 6.3285 14 1 4.4729 0.3178 6.5020 15 6 4.0758 -1.8987 0.6117 16 8 5.2844 -1.9855 0.5628 17 6 3.2176 -2.9897 0.0251 18 6 4.1129 -4.0810 -0.5653 19 8 4.8461 -3.5519 -1.6828 20 6 4.9281 -4.6487 -2.6244 21 6 3.5520 -5.3331 -2.4310 22 8 3.3041 -5.1741 -1.0194 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4426 -0.0005 30 1 1.6053 -1.7197 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 5.2723 0.2953 1.2093 33 1 3.8090 1.1867 1.6919 34 1 6.4235 2.4841 3.9377 35 1 2.5896 -3.4177 0.8065 36 1 2.5869 -2.5733 -0.7604 37 1 4.8108 -4.4326 0.1945 38 1 5.7411 -5.3264 -2.3642 39 1 5.0410 -4.2806 -3.6442 40 1 3.6063 -6.3890 -2.6960 41 1 2.7826 -4.8295 -3.0162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793246261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:17 Heat of formation + Delta-G solvation = -157.629749 kcal Electronic energy + Delta-G solvation = -22092.645914 eV Core-core repulsion = 18778.650844 eV Total energy + Delta-G solvation = -3313.995070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55664 -40.48169 -37.78946 -35.99614 -35.38699 -34.12062 -33.02669 -30.27493 -28.95731 -27.96176 -26.86599 -25.28720 -24.18136 -23.30866 -21.40875 -20.00402 -18.68448 -18.49415 -17.85137 -17.51830 -17.03708 -16.89119 -16.31816 -15.88631 -15.50632 -15.42792 -14.76652 -14.58317 -14.35850 -14.22403 -13.76102 -13.66284 -13.55003 -13.44112 -13.12846 -13.01476 -12.91337 -12.64283 -12.55671 -12.28512 -12.14273 -12.08465 -11.82553 -11.53136 -11.51427 -11.16834 -10.82020 -10.61129 -10.49887 -9.36332 -8.20280 -6.34996 1.35987 1.40459 1.47636 1.84820 2.17595 2.39811 2.61167 2.99964 3.08804 3.65702 3.69397 3.88648 3.92971 4.02686 4.09288 4.12165 4.23200 4.32161 4.50268 4.63649 4.64299 4.69418 4.71753 4.82285 4.84773 4.93521 4.98879 5.06526 5.07166 5.14596 5.24918 5.31120 5.45757 5.51378 5.61420 5.89730 6.07536 6.10445 6.71687 6.81302 7.29850 7.50538 8.86244 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.005861 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.774956 B = 4776.095331 C = 5868.972410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.147 4.147 4 C 0.109 3.891 5 N -0.598 5.598 6 C 0.262 3.738 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.966 3.034 12 H -0.279 1.279 13 H -0.278 1.278 14 H -0.259 1.259 15 C 0.500 3.500 16 O -0.590 6.590 17 C -0.139 4.139 18 C 0.253 3.747 19 O -0.393 6.393 20 C 0.002 3.998 21 C 0.019 3.981 22 O -0.393 6.393 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.099 0.901 31 H 0.072 0.928 32 H -0.011 1.011 33 H 0.036 0.964 34 H 0.266 0.734 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 -11.440 -11.749 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.205 4.205 4 C -0.014 4.014 5 N -0.329 5.329 6 C 0.141 3.859 7 C -0.583 4.583 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.790 3.210 12 H -0.205 1.205 13 H -0.203 1.203 14 H -0.184 1.184 15 C 0.289 3.711 16 O -0.471 6.471 17 C -0.179 4.179 18 C 0.158 3.842 19 O -0.314 6.314 20 C -0.073 4.073 21 C -0.056 4.056 22 O -0.314 6.314 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.007 0.993 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.949 -11.203 -11.616 20.081 hybrid contribution 0.976 0.302 0.938 1.387 sum -10.973 -10.902 -10.678 18.796 Atomic orbital electron populations 1.21723 0.91974 1.03029 1.02549 1.21532 0.97697 0.95852 0.97570 1.21894 0.99966 0.96857 1.01736 1.21884 0.78307 1.02280 0.98882 1.48176 1.07889 1.20916 1.55891 1.18817 0.89293 0.86017 0.91801 1.21732 1.32447 1.07308 0.96770 0.92959 1.25842 0.95102 0.94728 1.03433 1.70053 1.35376 1.12917 1.38490 0.85492 0.78745 0.77616 0.79101 1.20465 1.20340 1.18384 1.20902 0.88424 0.83670 0.78098 1.90659 1.17189 1.79127 1.60076 1.22051 0.98608 0.94144 1.03092 1.23479 0.87000 0.84396 0.89357 1.89409 1.75526 1.36182 1.30284 1.24718 0.98152 0.88757 0.95699 1.24471 0.96254 1.04119 0.80779 1.88857 1.66603 1.50896 1.25091 0.92359 0.91482 0.90814 0.91378 0.91462 0.93078 0.95384 0.88278 0.90970 0.99333 0.94638 0.92483 0.85120 0.86224 0.91331 0.90230 0.85171 0.85319 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.19 71.98 0.66 -1.85 16 2 C -0.11 -2.84 3.12 -10.79 -0.03 -2.88 16 3 C -0.15 -4.62 8.18 71.98 0.59 -4.03 16 4 C 0.11 3.46 4.70 86.38 0.41 3.87 16 5 N -0.60 -26.22 2.28 -826.14 -1.88 -28.10 16 6 C 0.26 14.52 4.23 85.64 0.36 14.88 16 7 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.01 0.46 5.46 84.65 0.46 0.92 16 10 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 11 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 15 C 0.50 22.01 7.56 87.66 0.66 22.68 16 16 O -0.59 -32.40 15.03 9.84 0.15 -32.25 16 17 C -0.14 -4.29 4.35 29.85 0.13 -4.16 16 18 C 0.25 7.97 3.55 71.98 0.26 8.22 16 19 O -0.39 -13.09 10.64 -120.99 -1.29 -14.37 16 20 C 0.00 0.05 7.95 72.64 0.58 0.63 16 21 C 0.02 0.32 8.07 72.64 0.59 0.91 16 22 O -0.39 -9.86 11.22 -126.22 -1.42 -11.28 16 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.80 7.30 -2.39 -0.02 1.78 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 1.09 5.89 -2.39 -0.01 1.08 16 30 H 0.10 2.47 6.44 -2.39 -0.02 2.45 16 31 H 0.07 2.45 8.07 -2.38 -0.02 2.43 16 32 H -0.01 -0.75 7.42 -2.38 -0.02 -0.76 16 33 H 0.04 1.98 5.98 -2.38 -0.01 1.96 16 34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.13 3.34 7.40 -2.39 -0.02 3.32 16 36 H 0.12 3.11 7.26 -2.38 -0.02 3.09 16 37 H 0.07 2.46 7.95 -2.39 -0.02 2.44 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -79.15 332.18 3.77 -75.37 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.00 Total: 12.60 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 4.90 Total: 7.27 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.60 Total: -85.23 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -2.55 Total: -57.90 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -79.15 3.77 -75.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793246261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.256 kcal (2) G-P(sol) polarization free energy of solvation -79.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds