Wall clock time and date at job start Mon Mar 30 2020 00:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48508 * 109.47166 * 269.99831 * 3 2 1 5 5 H 1.48502 * 109.47281 * 29.99900 * 3 2 1 6 6 H 1.48502 * 109.47147 * 150.00029 * 3 2 1 7 7 C 1.37877 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47343 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47180 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47280 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46959 * 179.97438 * 12 11 10 14 14 O 1.21278 * 120.00286 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99365 * 179.97438 * 13 12 11 16 16 O 1.41604 * 119.99294 * 180.02562 * 15 13 12 17 17 C 1.42908 * 113.99621 * 179.97438 * 16 15 13 18 18 C 1.53175 * 109.54043 * 85.44324 * 17 16 15 19 19 C 1.53092 * 109.16179 * 176.84918 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 0.97001 * 120.00139 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46419 * 59.99973 * 9 7 2 25 25 H 1.08998 * 109.47164 * 300.00224 * 9 7 2 26 26 H 1.08998 * 109.47330 * 60.00161 * 10 9 7 27 27 H 1.08998 * 109.47114 * 300.00181 * 10 9 7 28 28 H 1.08998 * 109.47254 * 59.99629 * 11 10 9 29 29 H 1.09006 * 109.46762 * 300.00223 * 11 10 9 30 30 H 1.09004 * 109.47292 * 59.99165 * 12 11 10 31 31 H 1.08998 * 109.46787 * 299.99557 * 12 11 10 32 32 H 0.96994 * 120.00121 * 359.97438 * 15 13 12 33 33 H 1.08997 * 109.61229 * 325.22538 * 17 16 15 34 34 H 1.09006 * 109.52647 * 296.75219 * 18 17 16 35 35 H 1.08998 * 109.52537 * 56.94111 * 18 17 16 36 36 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 37 37 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 38 38 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 39 39 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 40 40 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 41 41 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 6 1.7208 -7.4551 -0.0005 14 8 0.5081 -7.4551 -0.0005 15 7 2.3948 -8.6223 -0.0005 16 8 1.6867 -9.8486 -0.0011 17 6 2.5267 -11.0048 -0.0016 18 6 2.9206 -11.3525 1.4372 19 6 3.7545 -12.6363 1.4336 20 8 3.0035 -13.6888 0.8248 21 6 2.6478 -13.4396 -0.5366 22 6 1.7694 -12.1880 -0.6121 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5566 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0446 -0.8913 29 1 0.8532 -5.0450 0.8886 30 1 3.1006 -6.0924 0.8899 31 1 3.1016 -6.0923 -0.8901 32 1 3.3647 -8.6223 -0.0009 33 1 3.4240 -10.8048 -0.5871 34 1 3.5079 -10.5379 1.8612 35 1 2.0216 -11.5038 2.0346 36 1 4.0017 -12.9122 2.4587 37 1 4.6727 -12.4719 0.8698 38 1 2.0976 -14.2941 -0.9308 39 1 3.5514 -13.2856 -1.1263 40 1 0.8471 -12.3561 -0.0561 41 1 1.5334 -11.9709 -1.6539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805199619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:01 Heat of formation + Delta-G solvation = -107.897093 kcal Electronic energy + Delta-G solvation = -20149.355228 eV Core-core repulsion = 16837.516728 eV Total energy + Delta-G solvation = -3311.838500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13277 -39.34419 -37.33171 -34.90375 -33.58001 -32.66460 -31.70950 -31.48607 -29.43105 -25.70065 -24.83608 -24.15870 -22.51252 -21.20581 -20.26883 -19.99463 -18.49967 -17.02504 -16.60903 -16.48765 -16.15131 -15.89433 -15.37212 -15.20514 -14.60717 -14.37358 -14.16382 -14.00531 -13.56534 -13.11802 -12.73874 -12.65027 -12.20279 -11.89006 -11.76581 -11.72539 -11.62082 -11.14220 -10.99522 -10.86215 -10.56763 -10.51263 -10.43745 -10.24676 -9.89395 -9.62707 -9.25196 -9.02639 -8.99762 -8.30451 -5.95097 -3.97767 1.70972 2.68099 3.32297 3.34023 3.40131 3.43075 3.98480 4.11796 4.18013 4.38047 4.43133 4.48704 4.63334 4.69251 4.86806 4.99437 5.08206 5.13653 5.20917 5.23263 5.28057 5.40220 5.43677 5.55877 5.65561 5.74261 6.09598 6.24721 6.50305 6.62344 6.65782 6.80944 6.99442 7.15314 7.21303 7.74031 7.89640 8.06126 8.25797 8.47463 9.09939 9.65851 11.16201 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.063250 B = 0.002268 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.582648 B =12342.271837 C =12562.228890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.124 4.124 13 C 0.521 3.479 14 O -0.515 6.515 15 N -0.606 5.606 16 O -0.139 6.139 17 C 0.062 3.938 18 C -0.181 4.181 19 C 0.064 3.936 20 O -0.381 6.381 21 C 0.066 3.934 22 C -0.150 4.150 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.404 0.596 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.672 -27.249 -0.150 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.165 4.165 13 C 0.309 3.691 14 O -0.387 6.387 15 N -0.311 5.311 16 O -0.143 6.143 17 C 0.003 3.997 18 C -0.219 4.219 19 C -0.013 4.013 20 O -0.300 6.300 21 C -0.011 4.011 22 C -0.188 4.188 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.342 -27.299 -0.044 28.853 hybrid contribution 1.173 1.001 -0.126 1.547 sum 10.514 -26.298 -0.169 28.323 Atomic orbital electron populations 1.69975 1.06044 1.26526 1.50864 1.25048 0.94850 0.99251 0.95476 0.86606 0.79802 0.83596 0.78035 1.20717 1.21265 1.19937 1.21271 0.92966 0.91173 1.50464 0.92745 1.19103 0.94068 0.91221 0.97412 1.21650 0.99114 0.93785 1.00181 1.21509 0.97005 0.92363 1.03375 1.21782 1.00161 0.90024 1.04495 1.21405 0.89040 0.83058 0.75572 1.90742 1.14055 1.86351 1.47590 1.47976 1.07201 0.96396 1.79502 1.90650 1.21899 1.04896 1.96838 1.22587 0.94921 0.85990 0.96194 1.22808 1.02476 0.99001 0.97663 1.22577 0.93034 0.86547 0.99159 1.87970 1.73903 1.42165 1.25925 1.22586 0.97834 0.97213 0.83444 1.22272 1.00587 0.93199 1.02784 0.93028 0.96520 0.96519 0.93349 0.93361 0.91496 0.91501 0.88637 0.88637 0.75647 0.90640 0.90266 0.89687 0.88221 0.92910 0.87844 0.92774 0.89548 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.12 -1.56 5.70 -27.88 -0.16 -1.72 16 13 C 0.52 7.54 7.97 -10.98 -0.09 7.45 16 14 O -0.51 -10.15 16.39 -12.63 -0.21 -10.36 16 15 N -0.61 -6.66 6.38 31.22 0.20 -6.46 16 16 O -0.14 -1.71 10.76 -29.66 -0.32 -2.03 16 17 C 0.06 0.49 2.83 -26.55 -0.08 0.41 16 18 C -0.18 -1.27 5.79 -26.59 -0.15 -1.43 16 19 C 0.06 0.38 6.84 37.21 0.25 0.63 16 20 O -0.38 -2.99 10.77 -35.23 -0.38 -3.37 16 21 C 0.07 0.38 6.84 37.20 0.25 0.63 16 22 C -0.15 -1.05 5.79 -26.59 -0.15 -1.21 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.07 1.26 8.10 -51.93 -0.42 0.83 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.40 2.72 8.43 -40.82 -0.34 2.38 16 33 H 0.08 0.45 7.94 -51.93 -0.41 0.04 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -36.05 342.01 -7.82 -43.87 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -7.06 Total: -4.00 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.93 Total: -12.86 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.94 Total: -33.22 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.91 Total: -15.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.05 -7.82 -43.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805199619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.023 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds