Wall clock time and date at job start Mon Mar 30 2020 00:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48508 * 109.47166 * 269.99831 * 3 2 1 5 5 H 1.48502 * 109.47281 * 29.99900 * 3 2 1 6 6 H 1.48502 * 109.47147 * 150.00029 * 3 2 1 7 7 C 1.37877 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47343 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47180 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47280 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46959 * 179.97438 * 12 11 10 14 14 O 1.21278 * 120.00286 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99365 * 179.97438 * 13 12 11 16 16 O 1.41604 * 119.99294 * 180.02562 * 15 13 12 17 17 C 1.42908 * 113.99621 * 179.97438 * 16 15 13 18 18 C 1.53175 * 109.54043 * 85.44324 * 17 16 15 19 19 C 1.53092 * 109.16179 * 176.84918 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 0.97001 * 120.00139 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46419 * 59.99973 * 9 7 2 25 25 H 1.08998 * 109.47164 * 300.00224 * 9 7 2 26 26 H 1.08998 * 109.47330 * 60.00161 * 10 9 7 27 27 H 1.08998 * 109.47114 * 300.00181 * 10 9 7 28 28 H 1.08998 * 109.47254 * 59.99629 * 11 10 9 29 29 H 1.09006 * 109.46762 * 300.00223 * 11 10 9 30 30 H 1.09004 * 109.47292 * 59.99165 * 12 11 10 31 31 H 1.08998 * 109.46787 * 299.99557 * 12 11 10 32 32 H 0.96994 * 120.00121 * 359.97438 * 15 13 12 33 33 H 1.08997 * 109.61229 * 325.22538 * 17 16 15 34 34 H 1.09006 * 109.52647 * 296.75219 * 18 17 16 35 35 H 1.08998 * 109.52537 * 56.94111 * 18 17 16 36 36 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 37 37 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 38 38 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 39 39 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 40 40 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 41 41 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 6 1.7208 -7.4551 -0.0005 14 8 0.5081 -7.4551 -0.0005 15 7 2.3948 -8.6223 -0.0005 16 8 1.6867 -9.8486 -0.0011 17 6 2.5267 -11.0048 -0.0016 18 6 2.9206 -11.3525 1.4372 19 6 3.7545 -12.6363 1.4336 20 8 3.0035 -13.6888 0.8248 21 6 2.6478 -13.4396 -0.5366 22 6 1.7694 -12.1880 -0.6121 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5566 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0446 -0.8913 29 1 0.8532 -5.0450 0.8886 30 1 3.1006 -6.0924 0.8899 31 1 3.1016 -6.0923 -0.8901 32 1 3.3647 -8.6223 -0.0009 33 1 3.4240 -10.8048 -0.5871 34 1 3.5079 -10.5379 1.8612 35 1 2.0216 -11.5038 2.0346 36 1 4.0017 -12.9122 2.4587 37 1 4.6727 -12.4719 0.8698 38 1 2.0976 -14.2941 -0.9308 39 1 3.5514 -13.2856 -1.1263 40 1 0.8471 -12.3561 -0.0561 41 1 1.5334 -11.9709 -1.6539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805199619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:01 Heat of formation + Delta-G solvation = -132.650754 kcal Electronic energy + Delta-G solvation = -20150.428628 eV Core-core repulsion = 16837.516728 eV Total energy + Delta-G solvation = -3312.911900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88472 -40.27405 -38.17004 -36.59197 -34.64347 -34.33526 -32.55784 -32.17929 -31.02569 -27.41244 -25.49354 -24.69305 -24.18283 -22.07949 -21.68438 -21.10296 -19.31984 -18.39424 -17.97598 -17.22289 -17.10578 -16.93080 -16.50361 -16.11345 -15.84230 -15.56644 -15.26305 -14.77139 -14.52716 -14.47033 -13.94977 -13.59736 -13.57500 -13.30377 -13.26110 -12.80878 -12.38946 -12.35457 -12.31335 -12.15464 -12.12782 -11.71807 -11.46280 -11.35056 -11.33816 -11.16829 -10.90814 -10.70568 -10.53365 -9.96936 -8.17106 -6.29139 0.83536 1.41685 1.43925 1.54916 1.58533 2.43184 2.88744 3.15761 3.29189 3.55868 3.63055 3.71305 3.89184 3.90304 4.01971 4.15888 4.20231 4.42654 4.44757 4.59950 4.63558 4.68698 4.69957 4.75726 4.82477 4.89062 4.97672 5.00245 5.09213 5.19877 5.35662 5.39684 5.58925 5.76897 5.80775 5.90638 6.18652 6.26568 6.31829 6.89967 7.27543 7.40499 8.95164 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.063250 B = 0.002268 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.582648 B =12342.271837 C =12562.228890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.016 3.984 10 C -0.094 4.094 11 C -0.099 4.099 12 C -0.111 4.111 13 C 0.520 3.480 14 O -0.581 6.581 15 N -0.585 5.585 16 O -0.172 6.172 17 C 0.056 3.944 18 C -0.178 4.178 19 C 0.063 3.937 20 O -0.404 6.404 21 C 0.068 3.932 22 C -0.149 4.149 23 H 0.262 0.738 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.427 0.573 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.347 -27.770 -0.465 31.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.021 4.021 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.150 4.150 13 C 0.310 3.690 14 O -0.459 6.459 15 N -0.290 5.290 16 O -0.177 6.177 17 C -0.002 4.002 18 C -0.216 4.216 19 C -0.013 4.013 20 O -0.323 6.323 21 C -0.009 4.009 22 C -0.188 4.188 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.271 0.729 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.096 -27.865 -0.358 30.792 hybrid contribution 0.005 1.079 -0.029 1.079 sum 13.101 -26.787 -0.387 29.822 Atomic orbital electron populations 1.70139 1.08107 1.27702 1.52007 1.26114 0.95783 1.03815 0.94910 0.85376 0.78685 0.78048 0.78486 1.19745 1.21144 1.18185 1.21764 0.93816 0.92133 1.50002 0.91353 1.19081 0.94793 0.93918 0.94317 1.21435 0.97765 0.92239 1.01724 1.21296 0.97577 0.93581 1.01285 1.21657 0.98767 0.86691 1.07902 1.21689 0.88270 0.84428 0.74646 1.90727 1.16830 1.87389 1.50921 1.47634 1.08141 0.95730 1.77447 1.90660 1.24123 1.05944 1.96956 1.22886 0.95491 0.84624 0.97231 1.22773 1.01818 1.00213 0.96781 1.22698 0.93228 0.85351 1.00036 1.87944 1.74335 1.43039 1.27002 1.22703 0.98512 0.96724 0.82953 1.22301 1.00107 0.93780 1.02628 0.92922 0.99754 0.99782 0.91665 0.91617 0.93746 0.93821 0.85134 0.85058 0.72888 0.87850 0.89132 0.92190 0.87447 0.90700 0.86821 0.90690 0.91687 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 13.29 21.45 0.28 -58.90 16 2 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.87 4.97 29.85 0.15 1.02 16 10 C -0.09 -3.69 5.15 30.59 0.16 -3.53 16 11 C -0.10 -3.46 4.50 30.59 0.14 -3.33 16 12 C -0.11 -2.47 5.70 29.85 0.17 -2.30 16 13 C 0.52 14.50 7.97 87.66 0.70 15.20 16 14 O -0.58 -23.59 16.39 14.37 0.24 -23.36 16 15 N -0.58 -11.62 6.38 -173.53 -1.11 -12.72 16 16 O -0.17 -4.09 10.76 -21.40 -0.23 -4.32 16 17 C 0.06 0.78 2.83 30.71 0.09 0.86 16 18 C -0.18 -2.23 5.79 30.68 0.18 -2.06 16 19 C 0.06 0.61 6.84 72.01 0.49 1.10 16 20 O -0.40 -5.70 10.77 -148.98 -1.60 -7.30 16 21 C 0.07 0.65 6.84 72.01 0.49 1.14 16 22 C -0.15 -1.98 5.79 30.68 0.18 -1.80 16 23 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 24 H -0.02 -0.96 8.14 -2.38 -0.02 -0.97 16 25 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 26 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 29 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 30 H 0.13 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.43 4.17 8.43 -92.71 -0.78 3.39 16 33 H 0.10 0.86 7.94 -2.39 -0.02 0.85 16 34 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -82.44 342.01 3.26 -79.18 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.22 Total: 5.30 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 3.44 Total: -24.45 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -0.82 Total: -71.63 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -1.60 Total: -34.98 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -82.44 3.26 -79.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805199619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.471 kcal (2) G-P(sol) polarization free energy of solvation -82.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds