Wall clock time and date at job start Mon Mar 30 2020 00:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00037 * 2 1 4 4 H 1.48497 * 109.46949 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47194 * 300.00375 * 3 2 1 6 6 H 1.48503 * 109.46657 * 60.00428 * 3 2 1 7 7 C 1.37874 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00421 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47733 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47347 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47404 * 180.02562 * 12 11 10 14 14 O 1.21291 * 119.99673 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00597 * 180.02562 * 13 12 11 16 16 O 1.41599 * 119.99837 * 179.97438 * 15 13 12 17 17 C 1.42905 * 113.99445 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.46786 * 180.02562 * 17 16 15 19 19 H 1.08995 * 110.56841 * 52.32054 * 18 17 16 20 20 C 1.54517 * 110.51048 * 175.00269 * 18 17 16 21 21 C 1.54481 * 104.06349 * 118.64512 * 20 18 17 22 22 O 1.44422 * 104.80535 * 23.97783 * 21 20 18 23 23 C 1.44433 * 105.27452 * 319.49061 * 22 21 20 24 24 H 0.97003 * 119.99402 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46821 * 59.99492 * 9 7 2 26 26 H 1.09003 * 109.46660 * 300.00308 * 9 7 2 27 27 H 1.09003 * 109.46828 * 59.99840 * 10 9 7 28 28 H 1.09001 * 109.46911 * 300.00567 * 10 9 7 29 29 H 1.08994 * 109.46840 * 60.00294 * 11 10 9 30 30 H 1.09000 * 109.47319 * 299.99930 * 11 10 9 31 31 H 1.09005 * 109.47655 * 60.00070 * 12 11 10 32 32 H 1.09003 * 109.47354 * 299.99950 * 12 11 10 33 33 H 0.96999 * 119.99560 * 359.97438 * 15 13 12 34 34 H 1.08993 * 109.47207 * 60.00373 * 17 16 15 35 35 H 1.09003 * 109.47018 * 300.00094 * 17 16 15 36 36 H 1.08996 * 110.50794 * 237.28913 * 20 18 17 37 37 H 1.08994 * 110.50968 * 359.97438 * 20 18 17 38 38 H 1.08995 * 110.37274 * 142.81171 * 21 20 18 39 39 H 1.09001 * 110.36427 * 265.14751 * 21 20 18 40 40 H 1.08997 * 110.37115 * 281.68143 * 23 22 21 41 41 H 1.08995 * 110.37312 * 159.34452 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0018 13 6 1.7210 -7.4551 -0.0018 14 8 0.5081 -7.4551 -0.0009 15 7 2.3949 -8.6223 -0.0018 16 8 1.6868 -9.8486 -0.0013 17 6 2.5268 -11.0047 -0.0019 18 6 1.6595 -12.2651 -0.0019 19 1 0.9282 -12.2268 -0.8092 20 6 2.5403 -13.5283 -0.1287 21 6 2.2612 -14.3126 1.1726 22 8 0.9599 -13.8593 1.6050 23 6 0.9526 -12.4357 1.3610 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8712 -3.6039 -0.8922 29 1 0.8526 -5.0447 -0.8905 30 1 0.8545 -5.0450 0.8895 31 1 3.1018 -6.0923 0.8877 32 1 3.1005 -6.0923 -0.8923 33 1 3.3648 -8.6223 -0.0022 34 1 3.1566 -10.9966 0.8875 35 1 3.1554 -10.9966 -0.8924 36 1 2.2444 -14.1144 -0.9987 37 1 3.5934 -13.2548 -0.1918 38 1 2.2428 -15.3841 0.9734 39 1 3.0140 -14.0786 1.9254 40 1 1.5046 -11.9139 2.1427 41 1 -0.0711 -12.0654 1.3065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805201600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:27 Heat of formation + Delta-G solvation = -104.488261 kcal Electronic energy + Delta-G solvation = -19858.868108 eV Core-core repulsion = 16547.177426 eV Total energy + Delta-G solvation = -3311.690682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.07190 -39.45972 -37.42906 -34.90488 -33.75421 -32.70686 -31.90058 -29.94188 -29.32161 -26.12176 -25.42819 -23.26551 -22.54295 -21.20913 -20.28073 -20.00328 -18.49303 -16.93336 -16.91069 -16.29922 -16.18015 -16.07428 -15.68131 -15.13596 -14.61867 -14.38628 -14.11280 -13.78488 -13.47442 -12.94329 -12.67801 -12.40587 -12.29584 -11.94028 -11.76311 -11.73806 -11.62413 -11.27974 -11.03623 -11.00105 -10.57205 -10.49070 -10.44127 -10.25903 -9.92233 -9.62952 -9.25493 -9.06180 -8.98666 -8.30795 -5.95283 -3.97850 1.66830 2.66847 3.33182 3.40394 3.44059 3.48071 3.86682 4.07686 4.27973 4.38987 4.48624 4.54667 4.66086 4.70257 4.76544 4.90312 5.01360 5.14837 5.21175 5.25640 5.27870 5.37608 5.40171 5.46343 5.58717 5.73804 6.09514 6.24554 6.30290 6.49927 6.61102 6.80880 6.99280 7.14492 7.20786 7.74294 7.89602 8.06073 8.24305 8.47481 9.10106 9.65875 11.16030 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.070827 B = 0.002124 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.234769 B =13182.422213 C =13373.840901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.105 4.105 12 C -0.124 4.124 13 C 0.522 3.478 14 O -0.514 6.514 15 N -0.606 5.606 16 O -0.148 6.148 17 C 0.041 3.959 18 C -0.116 4.116 19 H 0.098 0.902 20 C -0.147 4.147 21 C 0.043 3.957 22 O -0.375 6.375 23 C 0.051 3.949 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.405 0.595 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.072 -28.130 0.232 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.164 4.164 13 C 0.310 3.690 14 O -0.387 6.387 15 N -0.310 5.310 16 O -0.152 6.152 17 C -0.037 4.037 18 C -0.137 4.137 19 H 0.116 0.884 20 C -0.185 4.185 21 C -0.034 4.034 22 O -0.293 6.293 23 C -0.026 4.026 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.245 0.755 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.625 -28.142 0.326 29.436 hybrid contribution 1.361 0.800 -0.150 1.585 sum 9.986 -27.343 0.177 29.110 Atomic orbital electron populations 1.69987 1.06041 1.26407 1.50953 1.25052 0.94850 0.99262 0.95486 0.86552 0.80050 0.83930 0.77542 1.19795 1.21068 1.21060 1.21311 0.93012 0.91164 1.50336 0.92684 1.19108 0.94076 0.91235 0.97426 1.21652 0.99118 0.93782 1.00196 1.21509 0.97006 0.92356 1.03388 1.21783 1.00165 0.89947 1.04539 1.21423 0.89047 0.83022 0.75530 1.90747 1.14044 1.86328 1.47562 1.47913 1.07319 0.96228 1.79566 1.90597 1.22103 1.05168 1.97328 1.23030 0.94334 0.84769 1.01519 1.22494 0.98293 0.92321 1.00547 0.88354 1.22947 1.00409 0.95413 0.99690 1.23435 0.85869 0.99753 0.94340 1.89167 1.33209 1.21771 1.85190 1.23529 1.02469 0.82158 0.94430 0.93086 0.96512 0.96503 0.93348 0.93342 0.91487 0.91484 0.88592 0.88606 0.75536 0.91869 0.91675 0.89779 0.90034 0.88821 0.92111 0.91785 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.33 16 11 C -0.10 -1.81 4.50 -26.73 -0.12 -1.93 16 12 C -0.12 -1.53 5.70 -27.89 -0.16 -1.69 16 13 C 0.52 7.43 7.97 -10.99 -0.09 7.35 16 14 O -0.51 -10.00 16.39 -12.65 -0.21 -10.21 16 15 N -0.61 -6.48 6.39 31.22 0.20 -6.28 16 16 O -0.15 -1.73 11.02 -29.66 -0.33 -2.06 16 17 C 0.04 0.29 5.37 37.16 0.20 0.48 16 18 C -0.12 -0.81 3.39 -89.05 -0.30 -1.11 16 19 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 20 C -0.15 -0.70 6.74 -25.16 -0.17 -0.87 16 21 C 0.04 0.25 7.63 37.93 0.29 0.54 16 22 O -0.37 -3.53 11.65 -35.23 -0.41 -3.94 16 23 C 0.05 0.43 7.10 37.93 0.27 0.70 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.41 2.58 8.54 -40.82 -0.35 2.23 16 34 H 0.06 0.35 7.96 -51.93 -0.41 -0.06 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.26 7.73 -51.93 -0.40 -0.14 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.51 7.74 -51.93 -0.40 0.11 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -36.16 344.64 -7.62 -43.78 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -7.02 Total: -4.35 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.77 Total: -12.22 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.94 Total: -33.00 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.94 Total: -16.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.16 -7.62 -43.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805201600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.703 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds