Wall clock time and date at job start Mon Mar 30 2020 00:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00037 * 2 1 4 4 H 1.48497 * 109.46949 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47194 * 300.00375 * 3 2 1 6 6 H 1.48503 * 109.46657 * 60.00428 * 3 2 1 7 7 C 1.37874 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00421 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47733 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47347 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47404 * 180.02562 * 12 11 10 14 14 O 1.21291 * 119.99673 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00597 * 180.02562 * 13 12 11 16 16 O 1.41599 * 119.99837 * 179.97438 * 15 13 12 17 17 C 1.42905 * 113.99445 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.46786 * 180.02562 * 17 16 15 19 19 H 1.08995 * 110.56841 * 52.32054 * 18 17 16 20 20 C 1.54517 * 110.51048 * 175.00269 * 18 17 16 21 21 C 1.54481 * 104.06349 * 118.64512 * 20 18 17 22 22 O 1.44422 * 104.80535 * 23.97783 * 21 20 18 23 23 C 1.44433 * 105.27452 * 319.49061 * 22 21 20 24 24 H 0.97003 * 119.99402 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46821 * 59.99492 * 9 7 2 26 26 H 1.09003 * 109.46660 * 300.00308 * 9 7 2 27 27 H 1.09003 * 109.46828 * 59.99840 * 10 9 7 28 28 H 1.09001 * 109.46911 * 300.00567 * 10 9 7 29 29 H 1.08994 * 109.46840 * 60.00294 * 11 10 9 30 30 H 1.09000 * 109.47319 * 299.99930 * 11 10 9 31 31 H 1.09005 * 109.47655 * 60.00070 * 12 11 10 32 32 H 1.09003 * 109.47354 * 299.99950 * 12 11 10 33 33 H 0.96999 * 119.99560 * 359.97438 * 15 13 12 34 34 H 1.08993 * 109.47207 * 60.00373 * 17 16 15 35 35 H 1.09003 * 109.47018 * 300.00094 * 17 16 15 36 36 H 1.08996 * 110.50794 * 237.28913 * 20 18 17 37 37 H 1.08994 * 110.50968 * 359.97438 * 20 18 17 38 38 H 1.08995 * 110.37274 * 142.81171 * 21 20 18 39 39 H 1.09001 * 110.36427 * 265.14751 * 21 20 18 40 40 H 1.08997 * 110.37115 * 281.68143 * 23 22 21 41 41 H 1.08995 * 110.37312 * 159.34452 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0018 13 6 1.7210 -7.4551 -0.0018 14 8 0.5081 -7.4551 -0.0009 15 7 2.3949 -8.6223 -0.0018 16 8 1.6868 -9.8486 -0.0013 17 6 2.5268 -11.0047 -0.0019 18 6 1.6595 -12.2651 -0.0019 19 1 0.9282 -12.2268 -0.8092 20 6 2.5403 -13.5283 -0.1287 21 6 2.2612 -14.3126 1.1726 22 8 0.9599 -13.8593 1.6050 23 6 0.9526 -12.4357 1.3610 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8712 -3.6039 -0.8922 29 1 0.8526 -5.0447 -0.8905 30 1 0.8545 -5.0450 0.8895 31 1 3.1018 -6.0923 0.8877 32 1 3.1005 -6.0923 -0.8923 33 1 3.3648 -8.6223 -0.0022 34 1 3.1566 -10.9966 0.8875 35 1 3.1554 -10.9966 -0.8924 36 1 2.2444 -14.1144 -0.9987 37 1 3.5934 -13.2548 -0.1918 38 1 2.2428 -15.3841 0.9734 39 1 3.0140 -14.0786 1.9254 40 1 1.5046 -11.9139 2.1427 41 1 -0.0711 -12.0654 1.3065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805201600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:26 Heat of formation + Delta-G solvation = -129.548984 kcal Electronic energy + Delta-G solvation = -19859.954822 eV Core-core repulsion = 16547.177426 eV Total energy + Delta-G solvation = -3312.777397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78220 -40.40692 -38.28961 -36.58331 -34.64451 -34.43652 -32.91456 -31.19825 -30.21954 -27.45427 -26.50318 -24.26426 -23.73103 -22.08299 -21.64533 -21.10751 -19.29780 -18.39244 -17.92479 -17.50818 -17.07969 -16.77632 -16.57724 -16.48982 -15.90519 -15.52124 -15.30341 -14.73070 -14.52888 -14.08055 -13.79404 -13.63081 -13.51050 -13.31227 -12.88747 -12.83602 -12.54038 -12.30336 -12.25929 -12.13931 -12.12574 -11.86441 -11.57477 -11.34350 -11.34233 -11.15415 -10.88768 -10.83899 -10.53907 -9.96843 -8.17038 -6.28926 0.83933 1.41923 1.42769 1.56166 1.59938 2.43255 2.95042 3.15933 3.29555 3.50900 3.67575 3.81619 3.85769 4.03530 4.13361 4.17114 4.18495 4.31411 4.36154 4.51608 4.64943 4.71039 4.73887 4.79729 4.83850 4.85136 4.89976 5.00904 5.08653 5.20927 5.36350 5.40574 5.59576 5.74149 5.78491 5.81416 5.91182 6.27059 6.33747 6.90454 7.29410 7.40748 8.95387 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.070827 B = 0.002124 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.234769 B =13182.422213 C =13373.840901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.010 4.010 3 Si 0.970 3.030 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.016 3.984 10 C -0.095 4.095 11 C -0.099 4.099 12 C -0.111 4.111 13 C 0.521 3.479 14 O -0.580 6.580 15 N -0.585 5.585 16 O -0.181 6.181 17 C 0.039 3.961 18 C -0.115 4.115 19 H 0.085 0.915 20 C -0.137 4.137 21 C 0.034 3.966 22 O -0.404 6.404 23 C 0.047 3.953 24 H 0.262 0.738 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.429 0.571 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 -28.797 -0.022 31.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.087 0.913 9 C -0.022 4.022 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.150 4.150 13 C 0.310 3.690 14 O -0.458 6.458 15 N -0.289 5.289 16 O -0.186 6.186 17 C -0.038 4.038 18 C -0.135 4.135 19 H 0.103 0.897 20 C -0.175 4.175 21 C -0.042 4.042 22 O -0.323 6.323 23 C -0.030 4.030 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.273 0.727 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.509 -28.856 0.070 31.451 hybrid contribution 0.159 0.897 -0.057 0.913 sum 12.668 -27.959 0.013 30.695 Atomic orbital electron populations 1.70147 1.08093 1.27620 1.52078 1.26115 0.95789 1.03812 0.94938 0.85326 0.79268 0.78426 0.77561 1.17920 1.20626 1.20628 1.21799 0.93831 0.92143 1.49867 0.91348 1.19088 0.94806 0.93921 0.94342 1.21439 0.97770 0.92271 1.01725 1.21293 0.97586 0.93570 1.01298 1.21653 0.98759 0.86686 1.07916 1.21681 0.88269 0.84418 0.74648 1.90732 1.16806 1.87380 1.50890 1.47547 1.08285 0.95644 1.77469 1.90605 1.24303 1.06193 1.97476 1.23285 0.94124 0.82829 1.03561 1.22481 0.98534 0.93560 0.98971 0.89666 1.22935 1.01292 0.93915 0.99312 1.23693 0.84641 1.00665 0.95172 1.89133 1.35401 1.22101 1.85670 1.23523 1.01773 0.82049 0.95647 0.92934 0.99738 0.99745 0.91658 0.91634 0.93757 0.93777 0.85097 0.85083 0.72724 0.89894 0.89331 0.89123 0.87584 0.87596 0.90951 0.91531 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.12 13.29 21.45 0.28 -58.83 16 2 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 3 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 0.84 4.97 29.85 0.15 0.99 16 10 C -0.09 -3.69 5.15 30.59 0.16 -3.54 16 11 C -0.10 -3.44 4.50 30.59 0.14 -3.31 16 12 C -0.11 -2.43 5.70 29.85 0.17 -2.26 16 13 C 0.52 14.22 7.97 87.66 0.70 14.92 16 14 O -0.58 -23.22 16.39 14.33 0.23 -22.98 16 15 N -0.59 -11.13 6.39 -173.52 -1.11 -12.24 16 16 O -0.18 -4.00 11.02 -21.39 -0.24 -4.23 16 17 C 0.04 0.44 5.37 71.98 0.39 0.83 16 18 C -0.12 -1.46 3.39 -9.78 -0.03 -1.49 16 19 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 20 C -0.14 -0.97 6.74 31.61 0.21 -0.75 16 21 C 0.03 0.34 7.63 72.49 0.55 0.89 16 22 O -0.40 -7.53 11.65 -148.98 -1.74 -9.26 16 23 C 0.05 0.79 7.10 72.48 0.51 1.31 16 24 H 0.26 15.44 8.31 -92.71 -0.77 14.66 16 25 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 30 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 31 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.43 3.77 8.54 -92.71 -0.79 2.98 16 34 H 0.08 0.63 7.96 -2.39 -0.02 0.61 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 0.25 7.73 -2.39 -0.02 0.23 16 38 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 40 H 0.07 1.05 7.74 -2.39 -0.02 1.03 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -82.97 344.64 3.32 -79.65 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.21 Total: 4.43 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.64 Total: -23.14 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -0.82 Total: -71.07 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.74 Total: -36.48 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -82.97 3.32 -79.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805201600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.897 kcal (2) G-P(sol) polarization free energy of solvation -82.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds