Wall clock time and date at job start Mon Mar 30 2020 00:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46878 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00262 * 359.97438 * 13 12 11 15 15 N 1.34783 * 120.00007 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99907 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47059 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.52249 * 304.99572 * 17 16 15 19 19 C 1.53147 * 109.52664 * 184.86898 * 17 16 15 20 20 O 1.43082 * 109.14293 * 184.85614 * 19 17 16 21 21 C 1.43076 * 113.65476 * 57.84737 * 20 19 17 22 22 C 1.53140 * 109.14987 * 302.08361 * 21 20 19 23 23 O 1.43075 * 109.15080 * 55.31036 * 22 21 20 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 1.08998 * 109.46943 * 299.99126 * 12 11 10 32 32 H 1.09002 * 109.47396 * 60.00115 * 12 11 10 33 33 H 0.97000 * 119.99712 * 359.97438 * 15 13 12 34 34 H 1.09004 * 109.46963 * 299.99625 * 16 15 13 35 35 H 1.09000 * 109.47731 * 59.99358 * 16 15 13 36 36 H 1.09003 * 109.52050 * 304.68267 * 19 17 16 37 37 H 1.08993 * 109.52249 * 64.87875 * 19 17 16 38 38 H 1.09001 * 109.52743 * 182.18047 * 21 20 19 39 39 H 1.08995 * 109.52442 * 61.98249 * 21 20 19 40 40 H 1.08996 * 109.52458 * 295.40943 * 22 21 20 41 41 H 1.09003 * 109.52526 * 175.21465 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 6 1.7207 -7.4551 -0.0274 14 8 0.5079 -7.4551 -0.0275 15 7 2.3945 -8.6224 -0.0315 16 6 1.6620 -9.8910 -0.0378 17 6 2.6561 -11.0540 -0.0421 18 1 3.3414 -10.9442 -0.8826 19 6 1.8956 -12.3770 -0.1712 20 8 2.8209 -13.4627 -0.0605 21 6 3.5617 -13.4632 1.1635 22 6 4.3223 -12.1401 1.2909 23 8 3.3969 -11.0544 1.1819 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 0.8531 -5.0490 0.8724 30 1 0.8537 -5.0406 -0.9075 31 1 3.1015 -6.0883 -0.9108 32 1 3.1002 -6.0964 0.8692 33 1 3.3645 -8.6224 -0.0310 34 1 1.0342 -9.9525 0.8512 35 1 1.0363 -9.9450 -0.9287 36 1 1.1536 -12.4496 0.6239 37 1 1.3981 -12.4181 -1.1400 38 1 4.2700 -14.2917 1.1605 39 1 2.8764 -13.5717 2.0041 40 1 5.0637 -12.0681 0.4952 41 1 4.8207 -12.0982 2.2594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806538149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:55 Heat of formation + Delta-G solvation = -154.130572 kcal Electronic energy + Delta-G solvation = -20181.174700 eV Core-core repulsion = 16867.331366 eV Total energy + Delta-G solvation = -3313.843334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55882 -39.48572 -36.67139 -35.23860 -34.70497 -32.64915 -32.15806 -29.87553 -28.93271 -26.60333 -25.26420 -23.62689 -22.12818 -21.68813 -20.18834 -19.92243 -17.48717 -17.33908 -16.78423 -16.62140 -16.20011 -15.98654 -15.63255 -15.55935 -14.91668 -14.40408 -14.27771 -13.92623 -13.50842 -13.15427 -12.88462 -12.57968 -12.34461 -12.05946 -11.92679 -11.65244 -11.56401 -11.20829 -10.95861 -10.89312 -10.50582 -10.47889 -10.37513 -9.88787 -9.64037 -9.57840 -9.18839 -9.18039 -8.95173 -8.28065 -5.92881 -3.95219 2.75081 2.97481 3.08746 3.25110 3.35640 3.41566 3.44920 4.08147 4.29149 4.43176 4.48963 4.51161 4.56854 4.71059 4.93655 4.95542 5.03818 5.14656 5.23744 5.33840 5.37038 5.41876 5.43821 5.52899 5.90810 6.18120 6.27361 6.34860 6.42669 6.49842 6.58913 6.88063 7.06018 7.23533 7.44877 7.76981 7.93359 8.08878 8.28300 8.50680 9.12528 9.68174 11.18453 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.058853 B = 0.002295 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.646660 B =12199.990542 C =12528.107211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.513 3.487 14 O -0.537 6.537 15 N -0.734 5.734 16 C 0.129 3.871 17 C 0.043 3.957 18 H 0.077 0.923 19 C 0.033 3.967 20 O -0.378 6.378 21 C 0.022 3.978 22 C 0.024 3.976 23 O -0.371 6.371 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.403 0.597 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.218 -28.680 0.806 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.300 3.700 14 O -0.413 6.413 15 N -0.388 5.388 16 C 0.005 3.995 17 C -0.016 4.016 18 H 0.095 0.905 19 C -0.045 4.045 20 O -0.296 6.296 21 C -0.055 4.055 22 C -0.053 4.053 23 O -0.290 6.290 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.237 0.763 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.164 -28.561 0.813 29.716 hybrid contribution 1.000 0.839 0.054 1.306 sum 9.165 -27.722 0.868 29.210 Atomic orbital electron populations 1.69980 1.06039 1.26471 1.50986 1.25052 0.94854 0.99238 0.95513 0.86604 0.79815 0.83596 0.78021 1.20731 1.21276 1.19934 1.21290 0.92976 0.91208 1.50306 0.92763 1.19101 0.94081 0.91281 0.97319 1.21649 0.99069 0.94014 1.00062 1.21451 0.97024 0.92702 1.02950 1.21788 1.00088 0.91901 1.04014 1.21117 0.88427 0.85533 0.74900 1.90707 1.14239 1.87684 1.48635 1.45962 1.10417 1.05210 1.77171 1.21211 0.93423 0.81425 1.03427 1.23040 0.94555 0.95626 0.88332 0.90549 1.23178 0.91586 0.85608 1.04082 1.88112 1.55104 1.47639 1.38762 1.23292 0.96038 0.98591 0.87615 1.23272 0.91786 0.86614 1.03584 1.88172 1.54785 1.47927 1.38152 0.93067 0.96577 0.96589 0.93499 0.93469 0.91808 0.91809 0.89152 0.89091 0.76315 0.90534 0.89736 0.91511 0.87197 0.87630 0.91914 0.91969 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 13 C 0.51 7.28 7.83 -10.98 -0.09 7.20 16 14 O -0.54 -9.89 15.98 5.55 0.09 -9.80 16 15 N -0.73 -7.65 5.51 -60.29 -0.33 -7.98 16 16 C 0.13 1.19 5.35 -4.04 -0.02 1.17 16 17 C 0.04 0.31 2.87 -26.66 -0.08 0.24 16 18 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 19 C 0.03 0.22 6.34 37.23 0.24 0.46 16 20 O -0.38 -3.00 10.84 -48.81 -0.53 -3.53 16 21 C 0.02 0.12 7.05 37.23 0.26 0.38 16 22 C 0.02 0.14 7.05 37.23 0.26 0.40 16 23 O -0.37 -3.12 10.44 -48.81 -0.51 -3.63 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.40 3.28 8.47 -40.82 -0.35 2.93 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -35.31 341.16 -7.88 -43.19 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.07 Total: -3.22 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.39 Total: -10.20 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.40 Total: -35.01 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.95 Total: -16.96 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.31 -7.88 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806538149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.940 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds